Experiment: 7H9 with Linezolid 0.3 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0447c and Rv0448c overlap by 4 nucleotides Rv0448c and Rv0449c are separated by 59 nucleotides
Rv0447c: Rv0447c - Probable cyclopropane-fatty-acyl-phospholipid synthase UfaA1 (cyclopropane fatty acid synthase) (CFA synthase), at 535,224 to 536,507
Rv0447c
Rv0448c: Rv0448c - Conserved hypothetical protein, at 536,504 to 537,169
Rv0448c
Rv0449c: Rv0449c - Conserved hypothetical protein, at 537,229 to 538,548
Rv0449c
Position (kb) 536
537
538 Strain fitness (log2 ratio) -1
0
1 at 535.513 kb on + strand, within Rv0447c at 535.514 kb on - strand, within Rv0447c at 535.514 kb on - strand, within Rv0447c at 535.618 kb on - strand, within Rv0447c at 535.681 kb on - strand, within Rv0447c at 535.681 kb on - strand, within Rv0447c at 535.690 kb on + strand, within Rv0447c at 535.691 kb on - strand, within Rv0447c at 535.999 kb on + strand, within Rv0447c at 536.050 kb on + strand, within Rv0447c at 536.061 kb on + strand, within Rv0447c at 536.061 kb on + strand, within Rv0447c at 536.062 kb on - strand, within Rv0447c at 536.062 kb on - strand, within Rv0447c at 536.062 kb on - strand, within Rv0447c at 536.062 kb on - strand, within Rv0447c at 536.062 kb on - strand, within Rv0447c at 536.062 kb on - strand, within Rv0447c at 536.062 kb on - strand, within Rv0447c at 536.064 kb on - strand, within Rv0447c at 536.064 kb on - strand, within Rv0447c at 536.227 kb on + strand, within Rv0447c at 536.228 kb on - strand, within Rv0447c at 536.228 kb on - strand, within Rv0447c at 536.739 kb on - strand, within Rv0448c at 536.745 kb on + strand, within Rv0448c at 536.746 kb on - strand, within Rv0448c at 536.746 kb on - strand, within Rv0448c at 536.746 kb on - strand, within Rv0448c at 536.779 kb on - strand, within Rv0448c at 536.779 kb on - strand, within Rv0448c at 536.820 kb on - strand, within Rv0448c at 536.826 kb on + strand, within Rv0448c at 536.826 kb on + strand, within Rv0448c at 536.928 kb on + strand, within Rv0448c at 537.029 kb on - strand, within Rv0448c at 537.132 kb on + strand at 537.133 kb on - strand at 537.142 kb on - strand at 537.142 kb on - strand at 537.142 kb on - strand at 537.205 kb on - strand at 537.536 kb on + strand, within Rv0449c at 537.575 kb on + strand, within Rv0449c at 537.575 kb on + strand, within Rv0449c at 537.866 kb on + strand, within Rv0449c at 537.866 kb on + strand, within Rv0449c at 537.866 kb on + strand, within Rv0449c at 537.866 kb on + strand, within Rv0449c at 537.866 kb on + strand, within Rv0449c at 537.867 kb on - strand, within Rv0449c at 537.953 kb on + strand, within Rv0449c at 537.954 kb on - strand, within Rv0449c at 538.037 kb on + strand, within Rv0449c at 538.038 kb on - strand, within Rv0449c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Linezolid 0.3 ug/mL remove 535,513 + Rv0447c 0.23 -0.6 535,514 - Rv0447c 0.23 -0.5 535,514 - Rv0447c 0.23 -1.3 535,618 - Rv0447c 0.31 -1.1 535,681 - Rv0447c 0.36 -0.5 535,681 - Rv0447c 0.36 +0.1 535,690 + Rv0447c 0.36 -0.2 535,691 - Rv0447c 0.36 -1.5 535,999 + Rv0447c 0.60 -0.9 536,050 + Rv0447c 0.64 -0.2 536,061 + Rv0447c 0.65 -0.6 536,061 + Rv0447c 0.65 +0.1 536,062 - Rv0447c 0.65 +0.1 536,062 - Rv0447c 0.65 +0.5 536,062 - Rv0447c 0.65 -1.5 536,062 - Rv0447c 0.65 +0.3 536,062 - Rv0447c 0.65 -0.1 536,062 - Rv0447c 0.65 +0.1 536,062 - Rv0447c 0.65 -1.5 536,064 - Rv0447c 0.65 -0.3 536,064 - Rv0447c 0.65 -1.5 536,227 + Rv0447c 0.78 -0.4 536,228 - Rv0447c 0.78 -1.0 536,228 - Rv0447c 0.78 +0.3 536,739 - Rv0448c 0.35 +0.0 536,745 + Rv0448c 0.36 -0.6 536,746 - Rv0448c 0.36 +0.0 536,746 - Rv0448c 0.36 -0.5 536,746 - Rv0448c 0.36 -0.1 536,779 - Rv0448c 0.41 -0.3 536,779 - Rv0448c 0.41 +1.1 536,820 - Rv0448c 0.47 -0.6 536,826 + Rv0448c 0.48 -0.2 536,826 + Rv0448c 0.48 -0.2 536,928 + Rv0448c 0.64 -1.0 537,029 - Rv0448c 0.79 +1.3 537,132 + -1.0 537,133 - -0.1 537,142 - -0.5 537,142 - -0.1 537,142 - -0.5 537,205 - +0.3 537,536 + Rv0449c 0.23 -0.1 537,575 + Rv0449c 0.26 +0.3 537,575 + Rv0449c 0.26 +1.1 537,866 + Rv0449c 0.48 -0.8 537,866 + Rv0449c 0.48 +0.4 537,866 + Rv0449c 0.48 -0.1 537,866 + Rv0449c 0.48 -0.8 537,866 + Rv0449c 0.48 -1.6 537,867 - Rv0449c 0.48 -0.5 537,953 + Rv0449c 0.55 -0.0 537,954 - Rv0449c 0.55 -1.5 538,037 + Rv0449c 0.61 +0.1 538,038 - Rv0449c 0.61 +0.0
Or see this region's nucleotide sequence