Experiment: 7H9 with Malondialdehyde tetrabutylammonium salt 0.96 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv1511 and Rv1512 overlap by 4 nucleotides Rv1512 and Rv1513 overlap by 4 nucleotides Rv1513 and Rv1514c are separated by 17 nucleotides Rv1514c and Rv1515c are separated by 34 nucleotides
Rv1511: Rv1511 - GDP-D-mannose dehydratase GmdA (GDP-mannose 4,6 dehydratase) (GMD), at 1,703,074 to 1,704,096
Rv1511
Rv1512: Rv1512 - Probable nucleotide-sugar epimerase EpiA, at 1,704,093 to 1,705,061
Rv1512
Rv1513: Rv1513 - Conserved protein, at 1,705,058 to 1,705,789
Rv1513
Rv1514c: Rv1514c - Conserved hypothetical protein, at 1,705,807 to 1,706,595
Rv1514c
Rv1515c: Rv1515c - Conserved hypothetical protein, at 1,706,630 to 1,707,526
Rv1515c
Position (kb)
1705
1706 Strain fitness (log2 ratio)
-1
0
1 at 1704.453 kb on + strand, within Rv1512 at 1705.454 kb on + strand, within Rv1513 at 1705.525 kb on + strand, within Rv1513 at 1705.854 kb on - strand at 1705.859 kb on + strand at 1705.876 kb on + strand at 1706.054 kb on - strand, within Rv1514c at 1706.442 kb on - strand, within Rv1514c at 1706.442 kb on - strand, within Rv1514c at 1706.476 kb on + strand, within Rv1514c at 1706.607 kb on - strand at 1706.677 kb on - strand at 1706.772 kb on - strand, within Rv1515c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Malondialdehyde tetrabutylammonium salt 0.96 mM remove 1,704,453 + Rv1512 0.37 +1.0 1,705,454 + Rv1513 0.54 -1.5 1,705,525 + Rv1513 0.64 -0.5 1,705,854 - +0.1 1,705,859 + +0.3 1,705,876 + +0.1 1,706,054 - Rv1514c 0.31 +0.8 1,706,442 - Rv1514c 0.80 -0.0 1,706,442 - Rv1514c 0.80 +0.2 1,706,476 + Rv1514c 0.85 +0.1 1,706,607 - -0.2 1,706,677 - -1.4 1,706,772 - Rv1515c 0.16 +0.2
Or see this region's nucleotide sequence