Experiment: 7H9 with Malondialdehyde tetrabutylammonium salt 0.96 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0693 and Rv0694 are separated by 2 nucleotides Rv0694 and Rv0695 are separated by 189 nucleotides Rv0695 and Rv0696 are separated by 48 nucleotides
Rv0693: Rv0693 - Probable coenzyme PQQ synthesis protein E PqqE (coenzyme PQQ synthesis protein III), at 792,157 to 793,332
Rv0693
Rv0694: Rv0694 - Possible L-lactate dehydrogenase (cytochrome) LldD1, at 793,335 to 794,525
Rv0694
Rv0695: Rv0695 - Conserved hypothetical protein, at 794,715 to 795,470
Rv0695
Rv0696: Rv0696 - Probable membrane sugar transferase, at 795,519 to 796,931
Rv0696
Position (kb) 793
794
795 Strain fitness (log2 ratio) -1
0
1 at 792.358 kb on + strand, within Rv0693 at 792.419 kb on - strand, within Rv0693 at 792.761 kb on + strand, within Rv0693 at 792.955 kb on + strand, within Rv0693 at 793.103 kb on - strand, within Rv0693 at 793.955 kb on - strand, within Rv0694 at 793.955 kb on - strand, within Rv0694 at 794.337 kb on + strand, within Rv0694 at 794.337 kb on + strand, within Rv0694 at 794.338 kb on - strand, within Rv0694 at 794.338 kb on - strand, within Rv0694 at 794.696 kb on - strand at 794.783 kb on - strand at 794.852 kb on - strand, within Rv0695 at 794.852 kb on - strand, within Rv0695 at 795.130 kb on + strand, within Rv0695
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Malondialdehyde tetrabutylammonium salt 0.96 mM remove 792,358 + Rv0693 0.17 -0.1 792,419 - Rv0693 0.22 +1.3 792,761 + Rv0693 0.51 -0.8 792,955 + Rv0693 0.68 +1.2 793,103 - Rv0693 0.80 +0.1 793,955 - Rv0694 0.52 -0.7 793,955 - Rv0694 0.52 -1.0 794,337 + Rv0694 0.84 -1.1 794,337 + Rv0694 0.84 +0.2 794,338 - Rv0694 0.84 -1.6 794,338 - Rv0694 0.84 -0.7 794,696 - +0.0 794,783 - -0.1 794,852 - Rv0695 0.18 -0.1 794,852 - Rv0695 0.18 -0.6 795,130 + Rv0695 0.55 -0.6
Or see this region's nucleotide sequence