Experiment: 7H9 with Malondialdehyde tetrabutylammonium salt 0.96 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0237 and Rv0238 are separated by 75 nucleotides Rv0238 and Rv0239 are separated by 61 nucleotides Rv0239 and Rv0240 are separated by 7 nucleotides Rv0240 and Rv0241c are separated by 29 nucleotides Rv0241c and Rv0242c are separated by 10 nucleotides
Rv0237: Rv0237 - Probable conserved lipoprotein LpqI, at 287,186 to 288,352
Rv0237
Rv0238: Rv0238 - Possible transcriptional regulatory protein (probably TetR-family), at 288,428 to 289,042
Rv0238
Rv0239: Rv0239 - Possible antitoxin VapB24, at 289,104 to 289,337
Rv0239
Rv0240: Rv0240 - Possible toxin VapC24. Contains PIN domain., at 289,345 to 289,782
Rv0240
Rv0241c: Rv0241c - Probable 3-hydroxyacyl-thioester dehydratase HtdX, at 289,812 to 290,654
Rv0241c
Rv0242c: Rv0242c - Probable 3-oxoacyl-[acyl-carrier protein] reductase FabG4 (3-ketoacyl-acyl carrier protein reductase), at 290,665 to 292,029
Rv0242c
Position (kb) 289
290 Strain fitness (log2 ratio) -2
-1
0
1
2 at 288.385 kb on - strand at 288.390 kb on + strand at 288.394 kb on + strand at 288.394 kb on + strand at 289.075 kb on + strand at 289.227 kb on + strand, within Rv0239 at 289.365 kb on + strand at 289.376 kb on - strand at 289.473 kb on + strand, within Rv0240 at 289.474 kb on - strand, within Rv0240 at 289.484 kb on - strand, within Rv0240 at 289.503 kb on + strand, within Rv0240 at 289.504 kb on - strand, within Rv0240 at 289.636 kb on - strand, within Rv0240 at 289.656 kb on - strand, within Rv0240 at 289.814 kb on - strand at 289.860 kb on - strand at 289.904 kb on - strand, within Rv0241c at 289.904 kb on - strand, within Rv0241c at 289.985 kb on + strand, within Rv0241c at 290.389 kb on - strand, within Rv0241c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Malondialdehyde tetrabutylammonium salt 0.96 mM remove 288,385 - -0.1 288,390 + +2.3 288,394 + +0.0 288,394 + -0.5 289,075 + -0.6 289,227 + Rv0239 0.53 -0.3 289,365 + -0.2 289,376 - -0.1 289,473 + Rv0240 0.29 -1.3 289,474 - Rv0240 0.29 -0.3 289,484 - Rv0240 0.32 -0.1 289,503 + Rv0240 0.36 -2.0 289,504 - Rv0240 0.36 +0.8 289,636 - Rv0240 0.66 -0.8 289,656 - Rv0240 0.71 -0.8 289,814 - -0.9 289,860 - -0.6 289,904 - Rv0241c 0.11 -0.4 289,904 - Rv0241c 0.11 -2.7 289,985 + Rv0241c 0.21 +0.9 290,389 - Rv0241c 0.68 -0.8
Or see this region's nucleotide sequence