Experiment: 7H9 with Malondialdehyde tetrabutylammonium salt 0.96 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0018c and Rv0019c are separated by 88 nucleotides Rv0019c and Rv0020c are separated by 123 nucleotides Rv0020c and GFF23 are separated by 199 nucleotides GFF23 and Rv0021c are separated by 186 nucleotides
Rv0018c: Rv0018c - Phosphoserine/threonine phosphatase PstP, at 21,637 to 23,181
Rv0018c
Rv0019c: Rv0019c - Conserved protein with FHA domain, FhaB, at 23,270 to 23,737
Rv0019c
Rv0020c: Rv0020c - Conserved protein with FHA domain, FhaA, at 23,861 to 25,444
Rv0020c
GFF23 - tRNA-Leu, at 25,644 to 25,726
GFF23
Rv0021c: Rv0021c - Conserved hypothetical protein, at 25,913 to 26,881
Rv0021c
Position (kb) 23
24
25
26 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 23.382 kb on - strand, within Rv0019c at 23.382 kb on - strand, within Rv0019c at 23.443 kb on - strand, within Rv0019c at 23.443 kb on - strand, within Rv0019c at 23.513 kb on - strand, within Rv0019c at 23.641 kb on - strand, within Rv0019c at 23.856 kb on + strand at 23.857 kb on - strand at 24.987 kb on - strand, within Rv0020c at 24.987 kb on - strand, within Rv0020c at 25.143 kb on + strand, within Rv0020c at 25.170 kb on + strand, within Rv0020c at 25.171 kb on - strand, within Rv0020c at 25.171 kb on - strand, within Rv0020c at 25.260 kb on + strand, within Rv0020c at 25.261 kb on - strand, within Rv0020c at 25.261 kb on - strand, within Rv0020c at 25.261 kb on - strand, within Rv0020c at 25.261 kb on - strand, within Rv0020c at 25.505 kb on + strand at 25.505 kb on + strand at 25.506 kb on - strand at 25.506 kb on - strand at 25.616 kb on + strand at 25.616 kb on + strand at 25.616 kb on + strand at 25.616 kb on + strand at 25.616 kb on + strand at 25.617 kb on - strand at 25.617 kb on - strand at 25.624 kb on + strand at 25.730 kb on + strand at 25.730 kb on + strand at 25.731 kb on - strand at 25.796 kb on + strand at 25.907 kb on - strand at 25.914 kb on + strand at 25.915 kb on - strand at 25.915 kb on - strand at 25.915 kb on - strand at 25.915 kb on - strand at 25.960 kb on + strand at 26.040 kb on + strand, within Rv0021c at 26.040 kb on + strand, within Rv0021c at 26.040 kb on + strand, within Rv0021c at 26.041 kb on - strand, within Rv0021c at 26.041 kb on - strand, within Rv0021c at 26.068 kb on - strand, within Rv0021c at 26.141 kb on + strand, within Rv0021c at 26.141 kb on + strand, within Rv0021c at 26.142 kb on - strand, within Rv0021c at 26.193 kb on + strand, within Rv0021c at 26.193 kb on + strand, within Rv0021c at 26.197 kb on + strand, within Rv0021c at 26.197 kb on + strand, within Rv0021c at 26.197 kb on + strand, within Rv0021c at 26.197 kb on + strand, within Rv0021c at 26.197 kb on + strand, within Rv0021c at 26.198 kb on - strand, within Rv0021c at 26.291 kb on - strand, within Rv0021c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Malondialdehyde tetrabutylammonium salt 0.96 mM remove 23,382 - Rv0019c 0.24 +0.9 23,382 - Rv0019c 0.24 -1.0 23,443 - Rv0019c 0.37 +0.9 23,443 - Rv0019c 0.37 -1.8 23,513 - Rv0019c 0.52 -2.1 23,641 - Rv0019c 0.79 -1.7 23,856 + -1.8 23,857 - +1.1 24,987 - Rv0020c 0.71 -3.1 24,987 - Rv0020c 0.71 -2.0 25,143 + Rv0020c 0.81 -1.7 25,170 + Rv0020c 0.83 -2.3 25,171 - Rv0020c 0.83 -1.8 25,171 - Rv0020c 0.83 -0.4 25,260 + Rv0020c 0.88 -1.1 25,261 - Rv0020c 0.88 -1.2 25,261 - Rv0020c 0.88 -0.9 25,261 - Rv0020c 0.88 -0.0 25,261 - Rv0020c 0.88 +0.9 25,505 + -1.7 25,505 + -1.7 25,506 - -0.2 25,506 - -0.3 25,616 + -0.8 25,616 + -1.1 25,616 + -0.3 25,616 + -1.5 25,616 + -0.4 25,617 - -0.9 25,617 - +0.8 25,624 + +0.3 25,730 + -1.0 25,730 + +0.4 25,731 - +1.0 25,796 + +1.2 25,907 - -1.1 25,914 + -0.4 25,915 - -0.6 25,915 - -0.7 25,915 - +1.9 25,915 - -0.0 25,960 + -1.0 26,040 + Rv0021c 0.13 -0.4 26,040 + Rv0021c 0.13 -0.2 26,040 + Rv0021c 0.13 +2.9 26,041 - Rv0021c 0.13 +0.0 26,041 - Rv0021c 0.13 -0.4 26,068 - Rv0021c 0.16 -0.6 26,141 + Rv0021c 0.24 +0.1 26,141 + Rv0021c 0.24 +0.2 26,142 - Rv0021c 0.24 +0.9 26,193 + Rv0021c 0.29 -1.4 26,193 + Rv0021c 0.29 -0.5 26,197 + Rv0021c 0.29 -1.4 26,197 + Rv0021c 0.29 +0.1 26,197 + Rv0021c 0.29 -0.1 26,197 + Rv0021c 0.29 -0.4 26,197 + Rv0021c 0.29 -1.0 26,198 - Rv0021c 0.29 -0.3 26,291 - Rv0021c 0.39 -0.2
Or see this region's nucleotide sequence