Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08775

Experiment: McCas-formate glass attached

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas-formate glass attached
1,615,847	+		MMJJ_RS08765	0.57	-1.9
1,615,912	+		MMJJ_RS08765	0.62	-1.6
1,615,964	+		MMJJ_RS08765	0.67	-0.6
1,615,975	-		MMJJ_RS08765	0.68	-4.7
1,615,976	+		MMJJ_RS08765	0.68	-0.3
1,615,976	+		MMJJ_RS08765	0.68	-4.0
1,615,995	-		MMJJ_RS08765	0.70	-4.0
1,615,995	-		MMJJ_RS08765	0.70	-0.0
1,615,996	+		MMJJ_RS08765	0.70	-0.8
1,616,001	-		MMJJ_RS08765	0.70	-0.7
1,616,002	+		MMJJ_RS08765	0.70	-5.1
1,616,006	+		MMJJ_RS08765	0.71	-4.6
1,616,114	+		MMJJ_RS08765	0.80	-2.6
1,616,123	+		MMJJ_RS08765	0.81	-0.9
1,616,128	+		MMJJ_RS08765	0.81	-0.1
1,616,128	+		MMJJ_RS08765	0.81	+0.4
1,616,128	+		MMJJ_RS08765	0.81	-4.2
1,616,160	+		MMJJ_RS08765	0.84	+1.0
1,616,172	-		MMJJ_RS08765	0.85	-4.4
1,616,183	+		MMJJ_RS08765	0.86	-1.9
1,616,218	+		MMJJ_RS08765	0.89	-0.1
1,616,218	+		MMJJ_RS08765	0.89	-1.1
1,616,221	+		MMJJ_RS08765	0.89	-0.9
1,616,221	+		MMJJ_RS08765	0.89	-1.9
1,616,227	-		MMJJ_RS08765	0.90	-0.6
1,616,228	+				-0.2
1,616,229	-				-2.3
1,616,230	+				-0.3
1,616,230	+				+0.3
1,616,232	-				-0.3
1,616,290	+				-2.7
1,616,292	-				-0.1
1,616,307	+				+0.4
1,616,344	+				-1.4
1,616,365	-				-1.5
1,616,385	+				-1.0
1,616,425	-		MMJJ_RS08770	0.15	-1.6
1,616,440	-		MMJJ_RS08770	0.18	-1.9
1,616,440	-		MMJJ_RS08770	0.18	-5.1
1,616,542	+		MMJJ_RS08770	0.38	-0.5
1,616,542	+		MMJJ_RS08770	0.38	-0.6
1,616,542	+		MMJJ_RS08770	0.38	-2.1
1,616,544	+		MMJJ_RS08770	0.39	-4.1
1,616,603	-		MMJJ_RS08770	0.50	+0.1
1,616,604	+		MMJJ_RS08770	0.50	+0.8
1,616,635	-		MMJJ_RS08770	0.57	-0.8
1,616,635	-		MMJJ_RS08770	0.57	-2.8
1,616,636	+		MMJJ_RS08770	0.57	-2.3
1,616,652	+		MMJJ_RS08770	0.60	-1.6
1,616,673	+		MMJJ_RS08770	0.64	-5.4
1,616,675	+		MMJJ_RS08770	0.64	+0.1
1,616,714	-		MMJJ_RS08770	0.72	-1.3
1,616,714	-		MMJJ_RS08770	0.72	-0.2
1,616,714	-		MMJJ_RS08770	0.72	-0.3
1,616,715	+		MMJJ_RS08770	0.72	+0.2
1,616,718	-		MMJJ_RS08770	0.73	-4.5
1,616,794	+		MMJJ_RS08770	0.88	-0.3
1,616,849	+				-3.9
1,616,859	+				-1.2
1,616,877	-				-0.8
1,616,877	-				-0.4
1,616,884	+				-1.1
1,616,949	-		MMJJ_RS08775	0.11	-4.4
1,616,949	-				-1.5
1,616,950	+		MMJJ_RS08775	0.11	-1.9
1,616,950	+		MMJJ_RS08775	0.11	-1.4
1,616,950	+		MMJJ_RS08775	0.11	-1.0
1,616,952	-		MMJJ_RS08775	0.11	+0.0
1,616,952	-		MMJJ_RS08775	0.11	-1.7
1,616,953	+		MMJJ_RS08775	0.12	-0.5
1,616,966	-		MMJJ_RS08775	0.13	-0.5
1,616,970	-		MMJJ_RS08775	0.13	-4.9
1,617,015	-		MMJJ_RS08775	0.18	-0.6
1,617,015	-		MMJJ_RS08775	0.18	-1.7
1,617,016	+		MMJJ_RS08775	0.18	-0.2
1,617,016	+		MMJJ_RS08775	0.18	-3.1
1,617,016	+		MMJJ_RS08775	0.18	+2.0
1,617,033	-		MMJJ_RS08775	0.20	-1.9
1,617,034	+		MMJJ_RS08775	0.20	-1.2
1,617,047	-		MMJJ_RS08775	0.22	-4.5
1,617,047	-		MMJJ_RS08775	0.22	-4.1
1,617,047	-		MMJJ_RS08775	0.22	-3.7
1,617,047	-		MMJJ_RS08775	0.22	-4.2
1,617,048	+		MMJJ_RS08775	0.22	+0.1
1,617,048	+		MMJJ_RS08775	0.22	+0.0
1,617,076	+		MMJJ_RS08775	0.25	+0.1
1,617,098	-		MMJJ_RS08775	0.27	-0.0
1,617,098	-		MMJJ_RS08775	0.27	-4.8
1,617,098	-		MMJJ_RS08775	0.27	-1.7
1,617,172	+		MMJJ_RS08775	0.35	-4.8
1,617,172	+		MMJJ_RS08775	0.35	-1.4
1,617,236	-		MMJJ_RS08775	0.42	-4.3
1,617,237	+		MMJJ_RS08775	0.42	+0.2
1,617,238	-		MMJJ_RS08775	0.42	-1.9
1,617,238	-				-0.4
1,617,238	-		MMJJ_RS08775	0.42	-3.5
1,617,238	-		MMJJ_RS08775	0.42	-4.6
1,617,238	-		MMJJ_RS08775	0.42	-1.9
1,617,238	-		MMJJ_RS08775	0.42	-0.4
1,617,238	-		MMJJ_RS08775	0.42	-2.1
1,617,238	-		MMJJ_RS08775	0.42	-0.3
1,617,239	+		MMJJ_RS08775	0.43	-1.4
1,617,239	+		MMJJ_RS08775	0.43	-3.9
1,617,239	+		MMJJ_RS08775	0.43	-2.4
1,617,239	+		MMJJ_RS08775	0.43	-2.4
1,617,239	+		MMJJ_RS08775	0.43	-0.7
1,617,239	+		MMJJ_RS08775	0.43	+0.3
1,617,239	+		MMJJ_RS08775	0.43	-3.3
1,617,242	-		MMJJ_RS08775	0.43	-2.9
1,617,242	-		MMJJ_RS08775	0.43	-1.4
1,617,242	-		MMJJ_RS08775	0.43	+1.4
1,617,242	-		MMJJ_RS08775	0.43	-0.8
1,617,242	-		MMJJ_RS08775	0.43	-2.7
1,617,243	+		MMJJ_RS08775	0.43	-3.1
1,617,243	+		MMJJ_RS08775	0.43	-1.8
1,617,243	+		MMJJ_RS08775	0.43	-0.5
1,617,279	+		MMJJ_RS08775	0.47	-2.8
1,617,296	-		MMJJ_RS08775	0.49	-1.2
1,617,337	-		MMJJ_RS08775	0.53	-1.4
1,617,370	+		MMJJ_RS08775	0.57	-0.5
1,617,390	-		MMJJ_RS08775	0.59	+2.3
1,617,404	-		MMJJ_RS08775	0.60	-4.8
1,617,405	+		MMJJ_RS08775	0.61	-1.0
1,617,405	+		MMJJ_RS08775	0.61	-4.9
1,617,405	+		MMJJ_RS08775	0.61	-2.3
1,617,511	+		MMJJ_RS08775	0.72	+0.4
1,617,520	-		MMJJ_RS08775	0.73	-1.4
1,617,521	+		MMJJ_RS08775	0.73	-4.8
1,617,525	-		MMJJ_RS08775	0.74	+0.6
1,617,525	-		MMJJ_RS08775	0.74	+1.2
1,617,526	+		MMJJ_RS08775	0.74	-0.8
1,617,526	+		MMJJ_RS08775	0.74	-0.9
1,617,528	+		MMJJ_RS08775	0.74	-4.8
1,617,576	-		MMJJ_RS08775	0.79	-4.9
1,617,591	+		MMJJ_RS08775	0.81	-1.6
1,617,705	-				-0.3
1,617,705	-				-4.6
1,617,724	-				-1.4
1,617,724	-				+1.6
1,617,728	-				-0.4
1,617,729	+				-0.7
1,617,729	+				-2.8
1,617,729	+				-4.4
1,617,729	+				-5.2
1,617,729	+				-1.3
1,617,731	+				-1.1
1,617,735	+				-2.0
1,617,735	+				-1.7
1,617,744	-				-2.0
1,617,745	+				-3.0
1,617,793	-				-1.2
1,617,820	-		MMJJ_RS08780	0.11	-0.3
1,617,820	-		MMJJ_RS08780	0.11	-4.6
1,617,821	+		MMJJ_RS08780	0.11	-0.2
1,617,821	+		MMJJ_RS08780	0.11	-0.1
1,617,824	+		MMJJ_RS08780	0.12	-0.1
1,617,830	+		MMJJ_RS08780	0.13	-0.6
1,617,851	-		MMJJ_RS08780	0.17	-0.8
1,617,852	+		MMJJ_RS08780	0.18	-1.0
1,617,857	+		MMJJ_RS08780	0.19	-0.2
1,617,891	-		MMJJ_RS08780	0.26	-1.1
1,617,891	-		MMJJ_RS08780	0.26	-4.1
1,617,892	+		MMJJ_RS08780	0.26	-2.1
1,617,893	-		MMJJ_RS08780	0.26	-2.6
1,617,894	+		MMJJ_RS08780	0.27	-3.8
1,617,908	+		MMJJ_RS08780	0.30	+0.7
1,617,928	-		MMJJ_RS08780	0.34	-4.1
1,617,936	-		MMJJ_RS08780	0.35	-3.5
1,617,937	+		MMJJ_RS08780	0.36	-1.1
1,617,937	+		MMJJ_RS08780	0.36	-1.4
1,618,075	-		MMJJ_RS08780	0.65	-4.4
1,618,078	+		MMJJ_RS08780	0.66	-0.8
1,618,285	-				-0.0
1,618,290	+				-1.2
1,618,336	+		MMJJ_RS08785	0.16	-1.4
1,618,336	+		MMJJ_RS08785	0.16	-0.1
1,618,344	-		MMJJ_RS08785	0.18	-2.8
1,618,344	-		MMJJ_RS08785	0.18	-0.9
1,618,346	-		MMJJ_RS08785	0.18	-2.1
1,618,359	+		MMJJ_RS08785	0.21	-2.4
1,618,435	+		MMJJ_RS08785	0.34	-1.9
1,618,476	-		MMJJ_RS08785	0.42	-1.2
1,618,476	-		MMJJ_RS08785	0.42	-0.5
1,618,476	-		MMJJ_RS08785	0.42	+0.5
1,618,555	+		MMJJ_RS08785	0.56	-4.9
1,618,677	-		MMJJ_RS08785	0.78	-1.3
1,618,707	-		MMJJ_RS08785	0.83	-5.0
1,618,707	-		MMJJ_RS08785	0.83	-0.7
1,618,713	-		MMJJ_RS08785	0.84	-0.3
1,618,714	+		MMJJ_RS08785	0.85	-4.4
1,618,714	+		MMJJ_RS08785	0.85	-1.4
1,618,715	-		MMJJ_RS08785	0.85	-1.2
1,618,715	-		MMJJ_RS08785	0.85	-1.6
1,618,715	-		MMJJ_RS08785	0.85	-3.7
1,618,715	-		MMJJ_RS08785	0.85	-3.5
1,618,716	+		MMJJ_RS08785	0.85	-4.4
1,618,716	+		MMJJ_RS08785	0.85	-0.5
1,618,719	-		MMJJ_RS08785	0.85	-1.5
1,618,719	-		MMJJ_RS08785	0.85	+0.2
1,618,731	-		MMJJ_RS08785	0.88	-4.5
1,618,731	-		MMJJ_RS08785	0.88	-0.4
1,618,736	-		MMJJ_RS08785	0.88	-0.0
1,618,736	-		MMJJ_RS08785	0.88	-1.8
1,618,737	+		MMJJ_RS08785	0.89	-1.1
1,618,737	+		MMJJ_RS08785	0.89	-0.5
1,618,752	-				-4.3
1,618,752	-				-1.4
1,618,754	-				-0.9
1,618,754	-				+2.9
1,618,755	+				-1.0
1,618,755	+				-1.6
1,618,755	+				-4.1