Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08750

Experiment: McCas-formate glass attached

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas-formate glass attached
1,610,935	+				-1.7
1,610,972	-		MMJJ_RS08745	0.10	-0.3
1,611,024	-		MMJJ_RS08745	0.15	-0.7
1,611,048	+		MMJJ_RS08745	0.17	+0.9
1,611,053	-		MMJJ_RS08745	0.18	+1.0
1,611,112	-		MMJJ_RS08745	0.24	-1.7
1,611,112	-		MMJJ_RS08745	0.24	-0.2
1,611,120	-		MMJJ_RS08745	0.24	-1.0
1,611,120	-		MMJJ_RS08745	0.24	-0.1
1,611,121	+		MMJJ_RS08745	0.24	+0.2
1,611,121	+		MMJJ_RS08745	0.24	-0.3
1,611,131	-		MMJJ_RS08745	0.25	-1.8
1,611,133	-		MMJJ_RS08745	0.25	-1.2
1,611,134	+		MMJJ_RS08745	0.26	+0.6
1,611,174	+		MMJJ_RS08745	0.29	+0.6
1,611,230	-		MMJJ_RS08745	0.35	-0.0
1,611,230	-		MMJJ_RS08745	0.35	+1.4
1,611,230	-		MMJJ_RS08745	0.35	-0.2
1,611,230	-		MMJJ_RS08745	0.35	-3.0
1,611,231	+		MMJJ_RS08745	0.35	+1.0
1,611,235	-		MMJJ_RS08745	0.35	+1.0
1,611,267	-		MMJJ_RS08745	0.38	-0.3
1,611,268	+		MMJJ_RS08745	0.38	+0.1
1,611,279	+		MMJJ_RS08745	0.39	-3.3
1,611,284	-		MMJJ_RS08745	0.40	+0.7
1,611,285	+		MMJJ_RS08745	0.40	+0.6
1,611,336	+		MMJJ_RS08745	0.45	-0.7
1,611,340	-		MMJJ_RS08745	0.45	-0.3
1,611,340	-		MMJJ_RS08745	0.45	+0.6
1,611,340	-		MMJJ_RS08745	0.45	+0.5
1,611,341	+		MMJJ_RS08745	0.45	-0.2
1,611,341	+		MMJJ_RS08745	0.45	-0.9
1,611,341	+		MMJJ_RS08745	0.45	+0.1
1,611,343	+		MMJJ_RS08745	0.45	-0.4
1,611,343	+		MMJJ_RS08745	0.45	-0.8
1,611,346	-		MMJJ_RS08745	0.46	+0.0
1,611,348	-		MMJJ_RS08745	0.46	+0.5
1,611,536	-		MMJJ_RS08745	0.64	-0.3
1,611,537	+		MMJJ_RS08745	0.64	+1.1
1,611,539	-		MMJJ_RS08745	0.64	-2.0
1,611,588	-		MMJJ_RS08745	0.68	-0.6
1,611,599	-		MMJJ_RS08745	0.69	+0.3
1,611,600	+		MMJJ_RS08745	0.70	+0.2
1,611,627	-		MMJJ_RS08745	0.72	-0.8
1,611,641	-		MMJJ_RS08745	0.73	-0.2
1,611,656	+		MMJJ_RS08745	0.75	-2.0
1,611,702	-		MMJJ_RS08745	0.79	+0.4
1,611,743	-		MMJJ_RS08745	0.83	-0.2
1,611,744	+		MMJJ_RS08745	0.83	+0.8
1,611,765	-		MMJJ_RS08745	0.85	+0.9
1,611,800	-		MMJJ_RS08745	0.88	-1.2
1,611,800	-		MMJJ_RS08745	0.88	+0.4
1,611,800	-				+1.8
1,611,800	-		MMJJ_RS08745	0.88	-0.6
1,611,800	-		MMJJ_RS08745	0.88	-3.2
1,611,800	-		MMJJ_RS08745	0.88	-0.6
1,611,801	+		MMJJ_RS08745	0.89	+0.6
1,611,801	+		MMJJ_RS08745	0.89	-0.9
1,611,808	+		MMJJ_RS08745	0.89	+0.4
1,611,825	-				-0.4
1,611,828	+				-3.2
1,611,912	+				+0.5
1,611,947	-				+0.1
1,611,985	+				-0.3
1,612,030	+				-1.6
1,612,030	+				-0.8
1,612,031	-				-1.0
1,612,031	-				-4.4
1,612,031	-				-5.2
1,612,032	+				-0.2
1,612,032	+				+0.1
1,612,032	+				-2.2
1,612,032	+				-1.7
1,612,032	+				-0.5
1,612,032	+				-0.3
1,612,033	-		MMJJ_RS08750	0.10	-0.1
1,612,033	-		MMJJ_RS08750	0.10	-0.3
1,612,033	-		MMJJ_RS08750	0.10	-0.9
1,612,033	-		MMJJ_RS08750	0.10	-1.4
1,612,033	-		MMJJ_RS08750	0.10	-0.6
1,612,034	+		MMJJ_RS08750	0.10	-1.0
1,612,034	+		MMJJ_RS08750	0.10	+0.2
1,612,034	+		MMJJ_RS08750	0.10	+0.1
1,612,034	+		MMJJ_RS08750	0.10	-0.1
1,612,034	+		MMJJ_RS08750	0.10	-1.3
1,612,106	-		MMJJ_RS08750	0.16	+0.8
1,612,107	+		MMJJ_RS08750	0.16	-2.0
1,612,118	+		MMJJ_RS08750	0.17	-4.6
1,612,185	+		MMJJ_RS08750	0.22	-2.9
1,612,191	-		MMJJ_RS08750	0.23	-2.0
1,612,192	+		MMJJ_RS08750	0.23	-2.1
1,612,220	-		MMJJ_RS08750	0.25	-4.9
1,612,221	+		MMJJ_RS08750	0.25	-0.5
1,612,322	+		MMJJ_RS08750	0.33	-1.6
1,612,326	-		MMJJ_RS08750	0.34	-0.5
1,612,327	+		MMJJ_RS08750	0.34	-3.8
1,612,327	+		MMJJ_RS08750	0.34	-0.2
1,612,347	-		MMJJ_RS08750	0.36	-3.7
1,612,348	+		MMJJ_RS08750	0.36	+0.1
1,612,348	+		MMJJ_RS08750	0.36	-2.5
1,612,348	+		MMJJ_RS08750	0.36	-0.8
1,612,353	-		MMJJ_RS08750	0.36	-3.5
1,612,354	+		MMJJ_RS08750	0.36	-0.1
1,612,361	-		MMJJ_RS08750	0.37	+0.8
1,612,362	+		MMJJ_RS08750	0.37	-0.6
1,612,363	-		MMJJ_RS08750	0.37	+0.3
1,612,445	+		MMJJ_RS08750	0.43	-0.8
1,612,445	+		MMJJ_RS08750	0.43	-0.9
1,612,454	-		MMJJ_RS08750	0.44	-0.8
1,612,454	-		MMJJ_RS08750	0.44	-0.1
1,612,454	-		MMJJ_RS08750	0.44	-0.9
1,612,454	-		MMJJ_RS08750	0.44	-2.0
1,612,454	-		MMJJ_RS08750	0.44	-0.9
1,612,454	-		MMJJ_RS08750	0.44	-0.8
1,612,455	+		MMJJ_RS08750	0.44	-3.5
1,612,455	+		MMJJ_RS08750	0.44	-2.0
1,612,455	+		MMJJ_RS08750	0.44	+0.2
1,612,455	+		MMJJ_RS08750	0.44	-2.1
1,612,455	+		MMJJ_RS08750	0.44	-0.4
1,612,456	-		MMJJ_RS08750	0.44	-0.1
1,612,456	-		MMJJ_RS08750	0.44	-1.3
1,612,457	+		MMJJ_RS08750	0.44	-0.7
1,612,457	+		MMJJ_RS08750	0.44	-1.0
1,612,465	-		MMJJ_RS08750	0.45	-1.1
1,612,465	-		MMJJ_RS08750	0.45	-1.5
1,612,471	+		MMJJ_RS08750	0.46	-0.9
1,612,487	+		MMJJ_RS08750	0.47	+1.4
1,612,497	-		MMJJ_RS08750	0.48	-2.9
1,612,498	+		MMJJ_RS08750	0.48	-0.5
1,612,518	-		MMJJ_RS08750	0.49	-3.5
1,612,519	+		MMJJ_RS08750	0.50	-2.6
1,612,563	-		MMJJ_RS08750	0.53	-1.4
1,612,567	+		MMJJ_RS08750	0.53	-3.3
1,612,624	+				-1.1
1,612,675	+		MMJJ_RS08750	0.62	-0.5
1,612,690	+		MMJJ_RS08750	0.63	+0.2
1,612,841	-		MMJJ_RS08750	0.76	-1.9
1,612,841	-		MMJJ_RS08750	0.76	-1.6
1,612,842	+		MMJJ_RS08750	0.76	-1.1
1,612,842	+		MMJJ_RS08750	0.76	-3.1
1,612,860	+		MMJJ_RS08750	0.77	+0.2
1,612,902	+		MMJJ_RS08750	0.81	-0.6
1,612,972	-		MMJJ_RS08750	0.86	-0.4
1,613,011	+		MMJJ_RS08750	0.90	-1.0
1,613,011	+		MMJJ_RS08750	0.90	-0.6
1,613,011	+		MMJJ_RS08750	0.90	-0.4
1,613,012	-		MMJJ_RS08750	0.90	-0.5
1,613,013	+		MMJJ_RS08750	0.90	-1.5
1,613,030	+				-1.2
1,613,059	+				-1.2
1,613,066	+				-1.1
1,613,075	+				-3.2
1,613,080	-				-0.2
1,613,081	+				-5.2
1,613,081	+				-0.6
1,613,081	+				+0.6
1,613,102	-				-0.2
1,613,149	-				-5.5
1,613,149	-				-3.0
1,613,149	-				+0.1
1,613,150	+				-0.1
1,613,150	+				-0.6
1,613,154	-				+0.8
1,613,154	-				-1.9
1,613,154	-				-0.4
1,613,154	-				-0.6
1,613,155	+				-4.6
1,613,155	+				-1.1
1,613,155	+				-1.3
1,613,155	+				-0.4
1,613,155	+				-2.1
1,613,155	+				-1.7
1,613,156	-				-1.9
1,613,157	+				-0.5
1,613,157	+				-1.5
1,613,157	+				-1.1
1,613,158	-				-1.8
1,613,158	-				+0.7
1,613,158	-				-1.8
1,613,159	+				-1.1
1,613,159	+				-1.4
1,613,159	+				-1.8
1,613,159	+				-0.4
1,613,172	-				+0.7
1,613,180	-				+0.2
1,613,181	+				-0.4
1,613,181	+				-0.9
1,613,181	+				-1.6
1,613,183	-				+0.0
1,613,183	-				-2.2
1,613,225	+				+0.8
1,613,229	-				+0.1
1,613,251	+		MMJJ_RS08755	0.11	-1.7
1,613,251	+		MMJJ_RS08755	0.11	+2.5
1,613,287	-		MMJJ_RS08755	0.15	+0.7
1,613,287	-		MMJJ_RS08755	0.15	+2.1
1,613,287	-		MMJJ_RS08755	0.15	-0.0
1,613,287	-		MMJJ_RS08755	0.15	-0.9
1,613,288	+		MMJJ_RS08755	0.15	-0.2
1,613,288	+		MMJJ_RS08755	0.15	-0.7
1,613,288	+		MMJJ_RS08755	0.15	-1.1
1,613,288	+		MMJJ_RS08755	0.15	-0.6
1,613,298	-		MMJJ_RS08755	0.16	-0.5
1,613,301	+		MMJJ_RS08755	0.17	-0.9
1,613,301	+		MMJJ_RS08755	0.17	+0.1
1,613,302	-		MMJJ_RS08755	0.17	-0.8
1,613,302	-		MMJJ_RS08755	0.17	+0.5
1,613,303	+		MMJJ_RS08755	0.17	+0.4
1,613,337	-		MMJJ_RS08755	0.21	-5.7
1,613,338	+		MMJJ_RS08755	0.21	-1.7
1,613,352	+		MMJJ_RS08755	0.22	-0.7
1,613,352	+		MMJJ_RS08755	0.22	-1.1
1,613,393	-		MMJJ_RS08755	0.27	-1.7
1,613,394	+		MMJJ_RS08755	0.27	-1.4
1,613,394	+		MMJJ_RS08755	0.27	-0.9
1,613,421	-		MMJJ_RS08755	0.30	-1.4
1,613,422	+		MMJJ_RS08755	0.30	-1.5
1,613,449	-		MMJJ_RS08755	0.33	+0.1
1,613,450	+		MMJJ_RS08755	0.33	-0.9
1,613,554	-		MMJJ_RS08755	0.44	-0.1
1,613,555	+		MMJJ_RS08755	0.44	-0.6
1,613,555	+		MMJJ_RS08755	0.44	-0.4
1,613,555	+		MMJJ_RS08755	0.44	-0.1
1,613,580	+		MMJJ_RS08755	0.47	-0.0
1,613,584	-		MMJJ_RS08755	0.47	-0.6
1,613,626	-		MMJJ_RS08755	0.52	+1.5
1,613,626	-		MMJJ_RS08755	0.52	-3.4
1,613,627	+		MMJJ_RS08755	0.52	-0.8
1,613,627	+		MMJJ_RS08755	0.52	+0.0
1,613,670	-		MMJJ_RS08755	0.57	-0.5
1,613,670	-		MMJJ_RS08755	0.57	+0.1
1,613,670	-		MMJJ_RS08755	0.57	-0.6
1,613,670	-		MMJJ_RS08755	0.57	+0.8
1,613,671	+		MMJJ_RS08755	0.57	-4.7
1,613,671	+		MMJJ_RS08755	0.57	+0.5
1,613,693	+		MMJJ_RS08755	0.59	+0.1
1,613,693	+		MMJJ_RS08755	0.59	-1.0
1,613,781	-		MMJJ_RS08755	0.69	-0.1
1,613,782	+		MMJJ_RS08755	0.69	+0.0
1,613,793	+		MMJJ_RS08755	0.70	-0.3
1,613,793	+		MMJJ_RS08755	0.70	+0.5
1,613,804	-		MMJJ_RS08755	0.71	-1.1
1,613,805	+		MMJJ_RS08755	0.71	+0.2
1,613,835	-		MMJJ_RS08755	0.75	-0.2
1,613,836	+		MMJJ_RS08755	0.75	+0.5
1,613,836	+		MMJJ_RS08755	0.75	-1.2
1,613,836	+		MMJJ_RS08755	0.75	-1.0
1,613,868	-		MMJJ_RS08755	0.78	-3.5
1,613,869	+		MMJJ_RS08755	0.78	-0.7
1,613,869	+		MMJJ_RS08755	0.78	-1.8
1,613,869	+		MMJJ_RS08755	0.78	+0.1
1,613,869	+		MMJJ_RS08755	0.78	+0.4
1,613,869	+		MMJJ_RS08755	0.78	-0.1
1,613,872	+		MMJJ_RS08755	0.79	-0.0
1,613,872	+		MMJJ_RS08755	0.79	-0.8
1,613,874	+		MMJJ_RS08755	0.79	+0.6
1,613,891	-		MMJJ_RS08755	0.81	-1.7
1,613,910	-		MMJJ_RS08755	0.83	-0.4
1,613,910	-		MMJJ_RS08755	0.83	-1.5
1,613,911	+		MMJJ_RS08755	0.83	-0.8
1,613,911	+		MMJJ_RS08755	0.83	-0.9
1,613,913	+		MMJJ_RS08755	0.83	-1.6
1,613,925	+		MMJJ_RS08755	0.84	+0.7
1,613,995	-				+0.7
1,614,033	-				+0.1
1,614,071	-				-0.1
1,614,084	+				+0.4
1,614,112	-				+0.2
1,614,113	+				-0.3
1,614,113	+				-2.5
1,614,139	-				-0.2