Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS07030

Experiment: McCas-formate glass attached

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas-formate glass attached
1,289,433	-		MMJJ_RS07025	0.33	-0.2
1,289,541	-		MMJJ_RS07025	0.53	+0.8
1,289,549	+		MMJJ_RS07025	0.54	-0.4
1,289,549	+		MMJJ_RS07025	0.54	-4.1
1,289,555	-		MMJJ_RS07025	0.56	+0.3
1,289,555	-		MMJJ_RS07025	0.56	+0.9
1,289,555	-		MMJJ_RS07025	0.56	+0.3
1,289,556	+		MMJJ_RS07025	0.56	-0.3
1,289,556	+		MMJJ_RS07025	0.56	-0.4
1,289,556	+		MMJJ_RS07025	0.56	+0.2
1,289,558	-		MMJJ_RS07025	0.56	+0.8
1,289,561	-		MMJJ_RS07025	0.57	-0.2
1,289,570	+		MMJJ_RS07025	0.58	-0.3
1,289,687	+		MMJJ_RS07025	0.80	+1.0
1,289,693	-		MMJJ_RS07025	0.81	-0.8
1,289,724	+		MMJJ_RS07025	0.87	-1.4
1,289,794	-				-1.1
1,289,875	-				+0.5
1,289,876	+				+0.2
1,289,888	+				-0.7
1,289,918	-				+0.9
1,289,919	+				-0.1
1,289,919	+				+1.2
1,289,936	+				+0.7
1,289,936	+				-4.0
1,289,936	+				+0.5
1,289,942	-				-4.1
1,289,949	-				+0.9
1,289,963	+				-4.5
1,289,984	+				-4.1
1,290,048	+				-1.2
1,290,048	+				+1.2
1,290,049	-				-4.9
1,290,049	-				-1.6
1,290,049	-				-3.7
1,290,049	-				-0.5
1,290,049	-				-3.0
1,290,049	-				-0.4
1,290,049	-				-4.2
1,290,050	+				-3.6
1,290,050	+				-3.3
1,290,050	+				-1.2
1,290,051	-				-1.6
1,290,051	-				-0.5
1,290,052	+				+0.4
1,290,086	-				-3.1
1,290,089	+				-0.1
1,290,289	+		MMJJ_RS07030	0.15	+0.1
1,290,292	-		MMJJ_RS07030	0.15	-0.7
1,290,292	-		MMJJ_RS07030	0.15	-2.3
1,290,292	-		MMJJ_RS07030	0.15	-3.1
1,290,292	-		MMJJ_RS07030	0.15	-1.8
1,290,295	+		MMJJ_RS07030	0.15	-2.8
1,290,325	-		MMJJ_RS07030	0.16	-0.3
1,290,325	-		MMJJ_RS07030	0.16	-1.4
1,290,325	-		MMJJ_RS07030	0.16	-4.0
1,290,325	-		MMJJ_RS07030	0.16	-0.5
1,290,326	+		MMJJ_RS07030	0.16	-0.6
1,290,329	-		MMJJ_RS07030	0.16	-2.6
1,290,329	-		MMJJ_RS07030	0.16	+0.8
1,290,329	-		MMJJ_RS07030	0.16	-0.1
1,290,329	-		MMJJ_RS07030	0.16	-2.8
1,290,329	-				-1.1
1,290,330	+		MMJJ_RS07030	0.16	-1.3
1,290,330	+		MMJJ_RS07030	0.16	-3.8
1,290,330	+		MMJJ_RS07030	0.16	-1.0
1,290,330	+		MMJJ_RS07030	0.16	-1.7
1,290,330	+		MMJJ_RS07030	0.16	+0.6
1,290,330	+		MMJJ_RS07030	0.16	+0.5
1,290,330	+		MMJJ_RS07030	0.16	+0.1
1,290,330	+		MMJJ_RS07030	0.16	-1.8
1,290,330	+		MMJJ_RS07030	0.16	+0.1
1,290,331	-		MMJJ_RS07030	0.17	-4.8
1,290,331	-		MMJJ_RS07030	0.17	-3.0
1,290,334	-		MMJJ_RS07030	0.17	-2.8
1,290,334	-		MMJJ_RS07030	0.17	-1.0
1,290,334	-		MMJJ_RS07030	0.17	-0.3
1,290,335	+		MMJJ_RS07030	0.17	-0.6
1,290,335	+		MMJJ_RS07030	0.17	-3.8
1,290,339	-		MMJJ_RS07030	0.17	-1.8
1,290,339	-		MMJJ_RS07030	0.17	-0.9
1,290,339	-		MMJJ_RS07030	0.17	-2.6
1,290,339	-		MMJJ_RS07030	0.17	-1.7
1,290,340	+		MMJJ_RS07030	0.17	-4.4
1,290,340	+		MMJJ_RS07030	0.17	-1.2
1,290,340	+		MMJJ_RS07030	0.17	-4.2
1,290,381	+		MMJJ_RS07030	0.18	+0.1
1,290,384	+		MMJJ_RS07030	0.19	+0.3
1,290,465	-		MMJJ_RS07030	0.22	+0.7
1,290,482	-		MMJJ_RS07030	0.22	-3.1
1,290,483	+		MMJJ_RS07030	0.22	-1.4
1,290,490	-		MMJJ_RS07030	0.23	+0.9
1,290,491	+		MMJJ_RS07030	0.23	-0.6
1,290,533	+		MMJJ_RS07030	0.24	-4.4
1,290,563	-		MMJJ_RS07030	0.26	-0.8
1,290,568	+		MMJJ_RS07030	0.26	-3.7
1,290,571	-		MMJJ_RS07030	0.26	-1.6
1,290,572	+		MMJJ_RS07030	0.26	+0.0
1,290,574	-		MMJJ_RS07030	0.26	-2.6
1,290,610	-		MMJJ_RS07030	0.27	-4.7
1,290,619	-		MMJJ_RS07030	0.28	-1.8
1,290,629	+		MMJJ_RS07030	0.28	-2.3
1,290,633	-		MMJJ_RS07030	0.28	-3.1
1,290,639	-		MMJJ_RS07030	0.29	-2.7
1,290,667	+		MMJJ_RS07030	0.30	-0.1
1,290,680	-		MMJJ_RS07030	0.30	-2.0
1,290,681	+		MMJJ_RS07030	0.30	-4.9
1,290,681	+		MMJJ_RS07030	0.30	-0.2
1,290,697	+		MMJJ_RS07030	0.31	-1.5
1,290,697	+		MMJJ_RS07030	0.31	+1.2
1,290,830	-		MMJJ_RS07030	0.36	-4.5
1,290,830	-		MMJJ_RS07030	0.36	-2.8
1,290,831	+		MMJJ_RS07030	0.36	+0.8
1,290,936	-		MMJJ_RS07030	0.40	-0.3
1,290,979	+		MMJJ_RS07030	0.42	-3.1
1,290,979	+				-1.3
1,290,992	+		MMJJ_RS07030	0.42	-3.2
1,291,000	-		MMJJ_RS07030	0.43	-3.8
1,291,000	-		MMJJ_RS07030	0.43	+0.9
1,291,035	-		MMJJ_RS07030	0.44	+0.2
1,291,061	+		MMJJ_RS07030	0.45	-1.3
1,291,075	-		MMJJ_RS07030	0.46	-2.0
1,291,076	+		MMJJ_RS07030	0.46	+0.1
1,291,081	-		MMJJ_RS07030	0.46	-2.9
1,291,103	-		MMJJ_RS07030	0.47	-0.1
1,291,103	-		MMJJ_RS07030	0.47	-0.7
1,291,103	-		MMJJ_RS07030	0.47	-3.0
1,291,104	+		MMJJ_RS07030	0.47	-3.6
1,291,104	+		MMJJ_RS07030	0.47	-1.1
1,291,104	+		MMJJ_RS07030	0.47	-1.3
1,291,120	-		MMJJ_RS07030	0.47	+0.7
1,291,122	-		MMJJ_RS07030	0.47	-5.1
1,291,122	-		MMJJ_RS07030	0.47	-0.9
1,291,130	+		MMJJ_RS07030	0.48	-3.7
1,291,155	-		MMJJ_RS07030	0.49	+0.9
1,291,156	+		MMJJ_RS07030	0.49	-0.5
1,291,159	-		MMJJ_RS07030	0.49	-1.4
1,291,178	+		MMJJ_RS07030	0.50	+1.9
1,291,186	-		MMJJ_RS07030	0.50	-4.2
1,291,186	-		MMJJ_RS07030	0.50	-0.3
1,291,186	-		MMJJ_RS07030	0.50	-3.3
1,291,186	-		MMJJ_RS07030	0.50	-0.8
1,291,187	+		MMJJ_RS07030	0.50	-1.0
1,291,187	+		MMJJ_RS07030	0.50	-1.0
1,291,187	+		MMJJ_RS07030	0.50	-0.4
1,291,187	+		MMJJ_RS07030	0.50	-1.4
1,291,189	-		MMJJ_RS07030	0.50	-2.0
1,291,189	-		MMJJ_RS07030	0.50	-2.5
1,291,189	-		MMJJ_RS07030	0.50	-2.3
1,291,189	-		MMJJ_RS07030	0.50	+3.1
1,291,189	-		MMJJ_RS07030	0.50	-0.8
1,291,190	+		MMJJ_RS07030	0.50	+1.8
1,291,191	-		MMJJ_RS07030	0.50	-2.9
1,291,191	-		MMJJ_RS07030	0.50	-0.5
1,291,192	+		MMJJ_RS07030	0.50	-1.5
1,291,192	+		MMJJ_RS07030	0.50	-0.2
1,291,192	+		MMJJ_RS07030	0.50	+1.3
1,291,193	-		MMJJ_RS07030	0.50	-4.3
1,291,193	-		MMJJ_RS07030	0.50	+0.4
1,291,193	-		MMJJ_RS07030	0.50	-2.4
1,291,194	+		MMJJ_RS07030	0.50	-3.6
1,291,194	+		MMJJ_RS07030	0.50	-1.8
1,291,222	-				-0.9
1,291,223	+		MMJJ_RS07030	0.51	+0.4
1,291,258	-		MMJJ_RS07030	0.53	-1.0
1,291,259	+		MMJJ_RS07030	0.53	-3.7
1,291,327	+		MMJJ_RS07030	0.55	-3.0
1,291,357	+		MMJJ_RS07030	0.57	-2.1
1,291,357	+		MMJJ_RS07030	0.57	-0.7
1,291,357	+		MMJJ_RS07030	0.57	-0.6
1,291,402	-		MMJJ_RS07030	0.58	-2.8
1,291,405	-		MMJJ_RS07030	0.58	-1.2
1,291,406	+		MMJJ_RS07030	0.59	+0.1
1,291,406	+		MMJJ_RS07030	0.59	-4.2
1,291,459	-		MMJJ_RS07030	0.61	-1.5
1,291,459	-		MMJJ_RS07030	0.61	-1.7
1,291,459	-		MMJJ_RS07030	0.61	+0.4
1,291,460	+		MMJJ_RS07030	0.61	+0.5
1,291,460	+		MMJJ_RS07030	0.61	-1.6
1,291,541	+		MMJJ_RS07030	0.64	-4.5
1,291,564	-		MMJJ_RS07030	0.65	+0.2
1,291,589	+		MMJJ_RS07030	0.66	-1.9
1,291,589	+		MMJJ_RS07030	0.66	-3.6
1,291,647	-		MMJJ_RS07030	0.68	-1.6
1,291,648	+		MMJJ_RS07030	0.68	-0.9
1,291,678	-		MMJJ_RS07030	0.69	-0.4
1,291,683	+		MMJJ_RS07030	0.69	+0.6
1,291,693	-		MMJJ_RS07030	0.70	+0.3
1,291,694	+		MMJJ_RS07030	0.70	-0.5
1,291,694	+		MMJJ_RS07030	0.70	-3.4
1,291,694	+		MMJJ_RS07030	0.70	-5.6
1,291,699	-		MMJJ_RS07030	0.70	+1.3
1,291,723	+		MMJJ_RS07030	0.71	-3.7
1,291,762	-		MMJJ_RS07030	0.72	+0.2
1,291,762	-		MMJJ_RS07030	0.72	-0.6
1,291,763	+				-0.6
1,291,796	+		MMJJ_RS07030	0.74	+1.6
1,291,796	+		MMJJ_RS07030	0.74	-0.9
1,291,852	-		MMJJ_RS07030	0.76	-2.2
1,291,853	+		MMJJ_RS07030	0.76	-4.5
1,291,858	-		MMJJ_RS07030	0.76	-1.8
1,291,859	+		MMJJ_RS07030	0.76	+0.9
1,291,859	+		MMJJ_RS07030	0.76	-0.1
1,291,870	-		MMJJ_RS07030	0.77	-0.7
1,291,911	-		MMJJ_RS07030	0.78	-0.9
1,291,912	+		MMJJ_RS07030	0.78	-0.1
1,291,913	-		MMJJ_RS07030	0.78	-3.1
1,291,914	+		MMJJ_RS07030	0.78	-0.2
1,291,914	+		MMJJ_RS07030	0.78	+0.6
1,291,915	-		MMJJ_RS07030	0.78	-1.9
1,291,915	-		MMJJ_RS07030	0.78	-1.4
1,291,915	-		MMJJ_RS07030	0.78	-2.6
1,291,919	+		MMJJ_RS07030	0.79	-3.1
1,291,964	+		MMJJ_RS07030	0.80	-0.8
1,292,061	-		MMJJ_RS07030	0.84	-5.6
1,292,062	+		MMJJ_RS07030	0.84	-4.6
1,292,062	+		MMJJ_RS07030	0.84	-3.3
1,292,062	+		MMJJ_RS07030	0.84	+0.6
1,292,094	+		MMJJ_RS07030	0.85	-0.0
1,292,095	-		MMJJ_RS07030	0.85	+0.1
1,292,096	+		MMJJ_RS07030	0.86	-2.7
1,292,113	+		MMJJ_RS07030	0.86	-1.4
1,292,140	+		MMJJ_RS07030	0.87	-0.0
1,292,161	-		MMJJ_RS07030	0.88	-3.0
1,292,161	-		MMJJ_RS07030	0.88	-2.3
1,292,162	+		MMJJ_RS07030	0.88	-1.4
1,292,166	-		MMJJ_RS07030	0.88	-1.6
1,292,166	-		MMJJ_RS07030	0.88	-3.4
1,292,167	+		MMJJ_RS07030	0.88	-0.9
1,292,167	+		MMJJ_RS07030	0.88	-0.6
1,292,167	+		MMJJ_RS07030	0.88	-0.1
1,292,167	+		MMJJ_RS07030	0.88	-0.4
1,292,171	-		MMJJ_RS07030	0.88	-0.5
1,292,191	-		MMJJ_RS07030	0.89	-2.0
1,292,233	-				-0.2
1,292,233	-				-1.5
1,292,253	-				+0.6
1,292,254	+				-1.4
1,292,254	+				-3.0
1,292,259	+				-0.1
1,292,261	-				-0.6
1,292,261	-				-0.2
1,292,262	+				+0.0
1,292,286	+				-0.4
1,292,286	+				-4.3
1,292,286	+				-1.0
1,292,332	+				-3.5
1,292,395	-				-0.0
1,292,398	-				+0.7
1,292,398	-				-3.2
1,292,414	+				-4.4
1,292,507	-				-1.9
1,292,507	-				+0.3
1,292,507	-				-0.4
1,292,508	+				-1.4
1,292,508	+				-4.0
1,292,510	+				-0.5
1,292,510	+				-2.3
1,292,510	+				+0.1
1,292,511	-				-0.3
1,292,511	-				-1.7
1,292,512	+				-0.0
1,292,512	+				-0.1
1,292,513	-				-1.0
1,292,514	+				-3.5
1,292,517	-				-0.5
1,292,534	-				-0.4
1,292,535	+				+1.1
1,292,535	+				-0.2
1,292,535	+				-2.4
1,292,549	-				-3.0
1,292,550	+				+3.4
1,292,573	+				-1.5
1,292,651	+				-1.5
1,292,739	+		MMJJ_RS07035	0.20	-2.2
1,293,014	-		MMJJ_RS07035	0.50	-1.1
1,293,035	-		MMJJ_RS07035	0.52	-2.2
1,293,086	-		MMJJ_RS07035	0.58	-0.6
1,293,086	-		MMJJ_RS07035	0.58	-1.7
1,293,439	-				-2.0
1,293,439	-				+0.8
1,293,440	+				+1.0