Experiment: McCas-formate glass attached
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03150 and MMJJ_RS03155 are separated by 19 nucleotides MMJJ_RS03155 and MMJJ_RS03160 are separated by 304 nucleotides
MMJJ_RS03150: MMJJ_RS03150 - 2-phospho-L-lactate transferase, at 594,619 to 595,548
_RS03150
MMJJ_RS03155: MMJJ_RS03155 - hypothetical protein, at 595,568 to 596,653
_RS03155
MMJJ_RS03160: MMJJ_RS03160 - winged helix-turn-helix transcriptional regulator, at 596,958 to 598,319
_RS03160
Position (kb) 595
596
597 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 594.755 kb on + strand, within MMJJ_RS03150 at 594.763 kb on - strand, within MMJJ_RS03150 at 594.764 kb on + strand, within MMJJ_RS03150 at 594.776 kb on - strand, within MMJJ_RS03150 at 595.044 kb on - strand, within MMJJ_RS03150 at 595.389 kb on + strand, within MMJJ_RS03150 at 595.422 kb on - strand, within MMJJ_RS03150 at 595.432 kb on + strand, within MMJJ_RS03150 at 595.432 kb on + strand, within MMJJ_RS03150 at 595.433 kb on - strand, within MMJJ_RS03150 at 595.433 kb on - strand, within MMJJ_RS03150 at 595.433 kb on - strand, within MMJJ_RS03150 at 595.434 kb on + strand, within MMJJ_RS03150 at 595.434 kb on + strand, within MMJJ_RS03150 at 595.434 kb on + strand, within MMJJ_RS03150 at 595.434 kb on + strand, within MMJJ_RS03150 at 595.434 kb on + strand, within MMJJ_RS03150 at 595.437 kb on - strand, within MMJJ_RS03150 at 595.454 kb on + strand, within MMJJ_RS03150 at 595.563 kb on - strand at 595.563 kb on - strand at 595.595 kb on - strand at 595.596 kb on + strand at 595.596 kb on + strand at 595.596 kb on + strand at 595.600 kb on - strand at 595.601 kb on + strand at 595.618 kb on - strand at 595.624 kb on + strand at 595.656 kb on - strand at 595.711 kb on - strand, within MMJJ_RS03155 at 595.711 kb on - strand, within MMJJ_RS03155 at 595.712 kb on + strand, within MMJJ_RS03155 at 595.712 kb on + strand, within MMJJ_RS03155 at 595.717 kb on + strand, within MMJJ_RS03155 at 595.795 kb on - strand at 595.796 kb on + strand, within MMJJ_RS03155 at 595.799 kb on - strand, within MMJJ_RS03155 at 595.800 kb on + strand, within MMJJ_RS03155 at 595.800 kb on + strand, within MMJJ_RS03155 at 595.803 kb on + strand, within MMJJ_RS03155 at 595.832 kb on - strand, within MMJJ_RS03155 at 595.856 kb on - strand, within MMJJ_RS03155 at 595.859 kb on - strand, within MMJJ_RS03155 at 595.925 kb on + strand, within MMJJ_RS03155 at 595.931 kb on - strand, within MMJJ_RS03155 at 595.952 kb on - strand, within MMJJ_RS03155 at 595.953 kb on + strand, within MMJJ_RS03155 at 595.960 kb on + strand, within MMJJ_RS03155 at 595.960 kb on + strand, within MMJJ_RS03155 at 595.986 kb on + strand, within MMJJ_RS03155 at 596.024 kb on - strand, within MMJJ_RS03155 at 596.029 kb on - strand, within MMJJ_RS03155 at 596.052 kb on + strand, within MMJJ_RS03155 at 596.060 kb on - strand, within MMJJ_RS03155 at 596.065 kb on - strand, within MMJJ_RS03155 at 596.065 kb on - strand, within MMJJ_RS03155 at 596.066 kb on + strand, within MMJJ_RS03155 at 596.067 kb on - strand, within MMJJ_RS03155 at 596.068 kb on + strand, within MMJJ_RS03155 at 596.081 kb on + strand, within MMJJ_RS03155 at 596.153 kb on + strand, within MMJJ_RS03155 at 596.155 kb on + strand, within MMJJ_RS03155 at 596.167 kb on - strand, within MMJJ_RS03155 at 596.192 kb on - strand, within MMJJ_RS03155 at 596.193 kb on + strand, within MMJJ_RS03155 at 596.247 kb on + strand, within MMJJ_RS03155 at 596.247 kb on + strand, within MMJJ_RS03155 at 596.299 kb on - strand, within MMJJ_RS03155 at 596.377 kb on + strand, within MMJJ_RS03155 at 596.384 kb on - strand, within MMJJ_RS03155 at 596.385 kb on + strand, within MMJJ_RS03155 at 596.388 kb on + strand, within MMJJ_RS03155 at 596.439 kb on + strand, within MMJJ_RS03155 at 596.439 kb on + strand, within MMJJ_RS03155 at 596.441 kb on + strand, within MMJJ_RS03155 at 596.536 kb on - strand, within MMJJ_RS03155 at 596.636 kb on + strand at 596.636 kb on + strand at 596.636 kb on + strand at 596.636 kb on + strand at 596.642 kb on + strand at 596.656 kb on - strand at 596.683 kb on + strand at 596.685 kb on + strand at 596.689 kb on - strand at 596.724 kb on - strand at 596.725 kb on + strand at 596.778 kb on - strand at 596.778 kb on - strand at 596.787 kb on - strand at 596.787 kb on - strand at 596.788 kb on + strand at 596.803 kb on - strand at 596.803 kb on - strand at 596.804 kb on + strand at 596.822 kb on - strand at 596.829 kb on - strand at 596.829 kb on - strand at 596.829 kb on - strand at 596.829 kb on - strand at 596.830 kb on + strand at 596.831 kb on - strand at 596.831 kb on - strand at 596.831 kb on - strand at 596.831 kb on - strand at 596.832 kb on + strand at 596.832 kb on + strand at 596.832 kb on + strand at 596.834 kb on - strand at 596.834 kb on - strand at 596.834 kb on - strand at 596.834 kb on - strand at 596.834 kb on - strand at 596.835 kb on + strand at 596.835 kb on + strand at 596.835 kb on + strand at 596.835 kb on + strand at 596.835 kb on + strand at 596.835 kb on + strand at 596.835 kb on + strand at 596.837 kb on + strand at 596.837 kb on + strand at 596.840 kb on + strand at 596.842 kb on - strand at 596.842 kb on - strand at 596.843 kb on + strand at 596.843 kb on + strand at 596.884 kb on - strand at 596.884 kb on - strand at 596.890 kb on - strand at 596.890 kb on - strand at 596.891 kb on + strand at 596.899 kb on - strand at 596.899 kb on - strand at 596.901 kb on - strand at 596.901 kb on - strand at 596.901 kb on - strand at 596.901 kb on - strand at 596.902 kb on + strand at 596.902 kb on + strand at 596.902 kb on + strand at 596.902 kb on + strand at 596.902 kb on + strand at 596.902 kb on + strand at 596.902 kb on + strand at 596.902 kb on + strand at 596.906 kb on - strand at 596.909 kb on - strand at 596.910 kb on + strand at 596.914 kb on - strand at 596.915 kb on + strand at 596.915 kb on + strand at 596.922 kb on + strand at 596.944 kb on + strand at 596.950 kb on - strand at 596.950 kb on - strand at 596.973 kb on - strand at 596.974 kb on + strand at 596.974 kb on + strand at 596.974 kb on + strand at 597.000 kb on + strand at 597.077 kb on - strand at 597.087 kb on - strand at 597.088 kb on + strand at 597.141 kb on + strand, within MMJJ_RS03160 at 597.165 kb on - strand, within MMJJ_RS03160 at 597.166 kb on + strand, within MMJJ_RS03160 at 597.166 kb on + strand, within MMJJ_RS03160 at 597.167 kb on - strand, within MMJJ_RS03160 at 597.167 kb on - strand, within MMJJ_RS03160 at 597.168 kb on + strand, within MMJJ_RS03160 at 597.232 kb on - strand, within MMJJ_RS03160 at 597.277 kb on + strand, within MMJJ_RS03160 at 597.363 kb on + strand, within MMJJ_RS03160 at 597.383 kb on - strand, within MMJJ_RS03160 at 597.384 kb on + strand, within MMJJ_RS03160 at 597.393 kb on - strand, within MMJJ_RS03160 at 597.406 kb on + strand, within MMJJ_RS03160 at 597.420 kb on - strand, within MMJJ_RS03160 at 597.440 kb on - strand, within MMJJ_RS03160 at 597.451 kb on + strand, within MMJJ_RS03160 at 597.613 kb on + strand, within MMJJ_RS03160 at 597.614 kb on - strand, within MMJJ_RS03160 at 597.615 kb on + strand, within MMJJ_RS03160 at 597.646 kb on + strand, within MMJJ_RS03160
Per-strain Table
Position Strand Gene LocusTag Fraction McCas-formate glass attached remove 594,755 + MMJJ_RS03150 0.15 +1.9 594,763 - MMJJ_RS03150 0.15 +1.2 594,764 + MMJJ_RS03150 0.16 +1.9 594,776 - MMJJ_RS03150 0.17 -1.0 595,044 - MMJJ_RS03150 0.46 +0.5 595,389 + MMJJ_RS03150 0.83 -3.3 595,422 - MMJJ_RS03150 0.86 +2.9 595,432 + MMJJ_RS03150 0.87 -3.3 595,432 + MMJJ_RS03150 0.87 -2.4 595,433 - MMJJ_RS03150 0.88 +1.8 595,433 - MMJJ_RS03150 0.88 +2.6 595,433 - MMJJ_RS03150 0.88 +0.4 595,434 + MMJJ_RS03150 0.88 -4.0 595,434 + MMJJ_RS03150 0.88 +1.2 595,434 + MMJJ_RS03150 0.88 -1.6 595,434 + MMJJ_RS03150 0.88 +1.2 595,434 + MMJJ_RS03150 0.88 -2.8 595,437 - MMJJ_RS03150 0.88 -1.3 595,454 + MMJJ_RS03150 0.90 +2.6 595,563 - -0.3 595,563 - +0.9 595,595 - +0.1 595,596 + -0.9 595,596 + -0.1 595,596 + -0.5 595,600 - +0.6 595,601 + +0.1 595,618 - +0.6 595,624 + -0.9 595,656 - +0.5 595,711 - MMJJ_RS03155 0.13 -2.3 595,711 - MMJJ_RS03155 0.13 -2.8 595,712 + MMJJ_RS03155 0.13 -0.7 595,712 + MMJJ_RS03155 0.13 -2.1 595,717 + MMJJ_RS03155 0.14 +0.9 595,795 - -1.6 595,796 + MMJJ_RS03155 0.21 -3.5 595,799 - MMJJ_RS03155 0.21 -0.4 595,800 + MMJJ_RS03155 0.21 +3.2 595,800 + MMJJ_RS03155 0.21 +0.3 595,803 + MMJJ_RS03155 0.22 -0.8 595,832 - MMJJ_RS03155 0.24 +0.3 595,856 - MMJJ_RS03155 0.27 -3.4 595,859 - MMJJ_RS03155 0.27 -0.9 595,925 + MMJJ_RS03155 0.33 -2.4 595,931 - MMJJ_RS03155 0.33 -0.4 595,952 - MMJJ_RS03155 0.35 -2.9 595,953 + MMJJ_RS03155 0.35 -1.0 595,960 + MMJJ_RS03155 0.36 -3.9 595,960 + MMJJ_RS03155 0.36 -4.1 595,986 + MMJJ_RS03155 0.38 +0.7 596,024 - MMJJ_RS03155 0.42 +0.2 596,029 - MMJJ_RS03155 0.42 -0.4 596,052 + MMJJ_RS03155 0.45 +0.0 596,060 - MMJJ_RS03155 0.45 +0.4 596,065 - MMJJ_RS03155 0.46 -4.3 596,065 - MMJJ_RS03155 0.46 -2.1 596,066 + MMJJ_RS03155 0.46 -3.5 596,067 - MMJJ_RS03155 0.46 -1.7 596,068 + MMJJ_RS03155 0.46 -2.4 596,081 + MMJJ_RS03155 0.47 -0.7 596,153 + MMJJ_RS03155 0.54 +1.3 596,155 + MMJJ_RS03155 0.54 -2.8 596,167 - MMJJ_RS03155 0.55 -0.0 596,192 - MMJJ_RS03155 0.57 +1.4 596,193 + MMJJ_RS03155 0.58 -3.1 596,247 + MMJJ_RS03155 0.63 -2.6 596,247 + MMJJ_RS03155 0.63 -0.7 596,299 - MMJJ_RS03155 0.67 -1.5 596,377 + MMJJ_RS03155 0.74 -0.8 596,384 - MMJJ_RS03155 0.75 -3.0 596,385 + MMJJ_RS03155 0.75 -0.7 596,388 + MMJJ_RS03155 0.76 -3.9 596,439 + MMJJ_RS03155 0.80 -2.3 596,439 + MMJJ_RS03155 0.80 -3.2 596,441 + MMJJ_RS03155 0.80 -0.3 596,536 - MMJJ_RS03155 0.89 +0.4 596,636 + -1.5 596,636 + -1.9 596,636 + -1.2 596,636 + +0.4 596,642 + -3.9 596,656 - +1.1 596,683 + -3.6 596,685 + -3.3 596,689 - -2.3 596,724 - +0.0 596,725 + -4.2 596,778 - +0.6 596,778 - -1.3 596,787 - -0.5 596,787 - +0.4 596,788 + +1.5 596,803 - -2.3 596,803 - -1.9 596,804 + -0.4 596,822 - -4.9 596,829 - +0.1 596,829 - +0.1 596,829 - +0.4 596,829 - +0.9 596,830 + +3.0 596,831 - -2.7 596,831 - -4.9 596,831 - -1.2 596,831 - +1.0 596,832 + -2.0 596,832 + -2.3 596,832 + -2.2 596,834 - +1.1 596,834 - +0.2 596,834 - +0.2 596,834 - -0.7 596,834 - -1.8 596,835 + -2.2 596,835 + -1.5 596,835 + -2.6 596,835 + +0.8 596,835 + -0.5 596,835 + -3.9 596,835 + -0.9 596,837 + -0.7 596,837 + -0.1 596,840 + +0.7 596,842 - +0.2 596,842 - -0.5 596,843 + -3.3 596,843 + -2.8 596,884 - -0.2 596,884 - +0.3 596,890 - +0.7 596,890 - +2.8 596,891 + +0.2 596,899 - +0.1 596,899 - -0.5 596,901 - +0.1 596,901 - -2.3 596,901 - -3.5 596,901 - -4.0 596,902 + +0.3 596,902 + -0.2 596,902 + -0.3 596,902 + -0.4 596,902 + -1.2 596,902 + +0.2 596,902 + +0.7 596,902 + -2.4 596,906 - -1.3 596,909 - -0.1 596,910 + +0.1 596,914 - +0.6 596,915 + +1.0 596,915 + +0.5 596,922 + -2.5 596,944 + -0.7 596,950 - -2.0 596,950 - -1.3 596,973 - -4.8 596,974 + +2.3 596,974 + +0.7 596,974 + -1.0 597,000 + -4.1 597,077 - -3.5 597,087 - +0.5 597,088 + -3.0 597,141 + MMJJ_RS03160 0.13 -0.1 597,165 - MMJJ_RS03160 0.15 -0.3 597,166 + MMJJ_RS03160 0.15 +1.0 597,166 + MMJJ_RS03160 0.15 +0.6 597,167 - MMJJ_RS03160 0.15 -0.7 597,167 - MMJJ_RS03160 0.15 -0.3 597,168 + MMJJ_RS03160 0.15 -5.2 597,232 - MMJJ_RS03160 0.20 -1.4 597,277 + MMJJ_RS03160 0.23 +0.0 597,363 + MMJJ_RS03160 0.30 -2.7 597,383 - MMJJ_RS03160 0.31 +0.1 597,384 + MMJJ_RS03160 0.31 -0.2 597,393 - MMJJ_RS03160 0.32 +0.1 597,406 + MMJJ_RS03160 0.33 -1.5 597,420 - MMJJ_RS03160 0.34 -4.5 597,440 - MMJJ_RS03160 0.35 -0.3 597,451 + MMJJ_RS03160 0.36 -0.3 597,613 + MMJJ_RS03160 0.48 -0.1 597,614 - MMJJ_RS03160 0.48 -2.1 597,615 + MMJJ_RS03160 0.48 -0.1 597,646 + MMJJ_RS03160 0.51 +0.2
Or see this region's nucleotide sequence