Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08730

Experiment: McCas-formate glass attached

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas-formate glass attached
1,607,361	+		MMJJ_RS08725	0.46	-1.7
1,607,361	+		MMJJ_RS08725	0.46	-2.8
1,607,361	+		MMJJ_RS08725	0.46	-0.1
1,607,364	-		MMJJ_RS08725	0.46	+0.1
1,607,364	-		MMJJ_RS08725	0.46	-0.3
1,607,365	+		MMJJ_RS08725	0.47	-1.8
1,607,365	+		MMJJ_RS08725	0.47	-1.7
1,607,382	-		MMJJ_RS08725	0.48	-0.1
1,607,382	-		MMJJ_RS08725	0.48	-1.9
1,607,383	+		MMJJ_RS08725	0.48	-1.7
1,607,406	+		MMJJ_RS08725	0.49	-3.9
1,607,429	-		MMJJ_RS08725	0.51	+2.0
1,607,454	+		MMJJ_RS08725	0.52	+0.5
1,607,471	+		MMJJ_RS08725	0.54	+0.8
1,607,472	-		MMJJ_RS08725	0.54	-2.3
1,607,473	+				-0.6
1,607,509	-		MMJJ_RS08725	0.56	-4.6
1,607,607	+				-0.8
1,607,612	-		MMJJ_RS08725	0.63	-3.6
1,607,640	-		MMJJ_RS08725	0.65	+0.3
1,607,656	-		MMJJ_RS08725	0.66	-0.6
1,607,657	+		MMJJ_RS08725	0.66	-1.6
1,607,657	+		MMJJ_RS08725	0.66	-4.8
1,607,670	-		MMJJ_RS08725	0.67	-2.4
1,607,698	-		MMJJ_RS08725	0.69	-4.1
1,607,718	-		MMJJ_RS08725	0.70	-2.5
1,607,718	-		MMJJ_RS08725	0.70	-2.9
1,607,761	+		MMJJ_RS08725	0.73	+0.4
1,607,761	+		MMJJ_RS08725	0.73	+0.7
1,607,761	+		MMJJ_RS08725	0.73	-0.8
1,607,763	-		MMJJ_RS08725	0.73	-3.4
1,607,765	-		MMJJ_RS08725	0.73	-0.5
1,607,766	+		MMJJ_RS08725	0.73	-3.8
1,607,801	-		MMJJ_RS08725	0.75	-3.1
1,607,802	+		MMJJ_RS08725	0.75	-3.2
1,607,804	-		MMJJ_RS08725	0.76	-2.3
1,607,821	-		MMJJ_RS08725	0.77	-4.6
1,607,844	-		MMJJ_RS08725	0.78	-4.1
1,607,850	-		MMJJ_RS08725	0.79	-3.0
1,607,855	-		MMJJ_RS08725	0.79	-3.7
1,607,855	-		MMJJ_RS08725	0.79	+0.5
1,607,955	-		MMJJ_RS08725	0.85	-1.9
1,607,957	-		MMJJ_RS08725	0.86	-3.1
1,607,958	+		MMJJ_RS08725	0.86	-3.7
1,608,002	-		MMJJ_RS08725	0.89	-1.4
1,608,099	+				-1.9
1,608,116	-				-1.0
1,608,116	-				-0.1
1,608,117	+				+0.0
1,608,117	+				-0.7
1,608,117	+				-1.4
1,608,132	+				+0.1
1,608,147	+				+1.9
1,608,172	-				+0.7
1,608,180	-				-0.4
1,608,185	+				-6.1
1,608,185	+				-1.9
1,608,187	+				-1.2
1,608,187	+				-2.8
1,608,205	-				-1.5
1,608,208	-				-0.4
1,608,208	-				-0.3
1,608,226	+				-0.2
1,608,260	+				+0.4
1,608,263	-				-2.5
1,608,271	-				-0.2
1,608,271	-				-5.5
1,608,272	+				-0.4
1,608,272	+				-1.5
1,608,272	+				-1.0
1,608,273	-				-0.1
1,608,294	-				-3.2
1,608,303	+				-0.2
1,608,306	-				-2.2
1,608,329	-				+0.1
1,608,330	+				-2.3
1,608,332	-				-2.2
1,608,335	-				-0.8
1,608,336	+				-2.8
1,608,336	+				-2.2
1,608,336	+				-1.4
1,608,336	+				-0.2
1,608,336	+				-0.3
1,608,355	-				+0.4
1,608,356	+				-1.1
1,608,390	-				+0.1
1,608,391	+				-0.1
1,608,411	+				-1.5
1,608,445	-		MMJJ_RS08730	0.12	+0.5
1,608,452	-		MMJJ_RS08730	0.13	-1.0
1,608,466	-		MMJJ_RS08730	0.14	-1.3
1,608,468	-		MMJJ_RS08730	0.14	-0.8
1,608,468	-		MMJJ_RS08730	0.14	+0.2
1,608,468	-		MMJJ_RS08730	0.14	-0.5
1,608,468	-		MMJJ_RS08730	0.14	-5.5
1,608,469	+		MMJJ_RS08730	0.14	-1.9
1,608,469	+		MMJJ_RS08730	0.14	-1.1
1,608,469	+		MMJJ_RS08730	0.14	-1.0
1,608,476	+		MMJJ_RS08730	0.15	-0.2
1,608,477	-		MMJJ_RS08730	0.15	-1.8
1,608,477	-		MMJJ_RS08730	0.15	-1.3
1,608,478	+		MMJJ_RS08730	0.15	-0.8
1,608,478	+		MMJJ_RS08730	0.15	-2.0
1,608,503	+		MMJJ_RS08730	0.17	+0.5
1,608,537	-		MMJJ_RS08730	0.21	-2.7
1,608,537	-		MMJJ_RS08730	0.21	-0.4
1,608,539	-		MMJJ_RS08730	0.21	-4.1
1,608,548	-		MMJJ_RS08730	0.22	-0.9
1,608,549	+		MMJJ_RS08730	0.22	-3.6
1,608,592	-		MMJJ_RS08730	0.26	+0.1
1,608,609	-		MMJJ_RS08730	0.27	-1.2
1,608,610	+		MMJJ_RS08730	0.28	-3.0
1,608,637	+		MMJJ_RS08730	0.30	-0.8
1,608,642	+		MMJJ_RS08730	0.31	-1.6
1,608,746	-		MMJJ_RS08730	0.40	-1.1
1,608,753	+		MMJJ_RS08730	0.41	-1.5
1,608,799	+		MMJJ_RS08730	0.45	-1.0
1,608,852	-		MMJJ_RS08730	0.50	-0.7
1,608,853	+		MMJJ_RS08730	0.50	-2.5
1,608,853	+		MMJJ_RS08730	0.50	-0.6
1,608,853	+		MMJJ_RS08730	0.50	-1.2
1,608,886	-		MMJJ_RS08730	0.53	-1.4
1,608,910	-		MMJJ_RS08730	0.56	-4.6
1,608,925	-		MMJJ_RS08730	0.57	-3.8
1,608,926	+		MMJJ_RS08730	0.57	-0.1
1,608,973	+		MMJJ_RS08730	0.62	-0.6
1,608,978	+		MMJJ_RS08730	0.62	-1.5
1,608,978	+		MMJJ_RS08730	0.62	-1.1
1,609,028	+		MMJJ_RS08730	0.67	-0.5
1,609,028	+		MMJJ_RS08730	0.67	+1.5
1,609,032	-		MMJJ_RS08730	0.67	-2.4
1,609,032	-		MMJJ_RS08730	0.67	-0.9
1,609,032	-		MMJJ_RS08730	0.67	-3.6
1,609,032	-		MMJJ_RS08730	0.67	-1.6
1,609,033	+		MMJJ_RS08730	0.67	-0.6
1,609,033	+		MMJJ_RS08730	0.67	+0.2
1,609,036	-		MMJJ_RS08730	0.68	-5.2
1,609,037	+		MMJJ_RS08730	0.68	+0.1
1,609,040	-		MMJJ_RS08730	0.68	+0.3
1,609,040	-		MMJJ_RS08730	0.68	-0.5
1,609,040	-		MMJJ_RS08730	0.68	-1.5
1,609,041	+		MMJJ_RS08730	0.68	-1.1
1,609,041	+		MMJJ_RS08730	0.68	-2.0
1,609,041	+		MMJJ_RS08730	0.68	-1.7
1,609,041	+		MMJJ_RS08730	0.68	+0.1
1,609,042	-		MMJJ_RS08730	0.68	-1.7
1,609,042	-		MMJJ_RS08730	0.68	-1.5
1,609,042	-		MMJJ_RS08730	0.68	-0.1
1,609,054	-		MMJJ_RS08730	0.69	-2.5
1,609,066	+		MMJJ_RS08730	0.70	-1.0
1,609,189	+		MMJJ_RS08730	0.82	-2.9
1,609,194	+		MMJJ_RS08730	0.82	-0.8
1,609,194	+		MMJJ_RS08730	0.82	-5.0
1,609,194	+		MMJJ_RS08730	0.82	+2.2
1,609,249	-		MMJJ_RS08730	0.88	-5.3
1,609,249	-		MMJJ_RS08730	0.88	-0.8
1,609,292	+				-3.4
1,609,299	-				-1.5
1,609,305	+				-1.6
1,609,334	-				-1.1
1,609,335	+				-1.5
1,609,336	-				-0.4
1,609,337	+				+1.0
1,609,351	-				+1.7
1,609,352	+				-2.8
1,609,400	+				+0.3
1,609,433	-				+0.3
1,609,433	-				-1.5
1,609,435	-				+0.3
1,609,435	-				+0.0
1,609,455	-		MMJJ_RS08735	0.11	-1.8
1,609,475	-		MMJJ_RS08735	0.13	+0.4
1,609,476	+		MMJJ_RS08735	0.14	-0.2
1,609,510	-		MMJJ_RS08735	0.18	-1.7
1,609,511	+		MMJJ_RS08735	0.18	+0.3
1,609,511	+		MMJJ_RS08735	0.18	-0.2
1,609,514	-		MMJJ_RS08735	0.19	+0.1
1,609,515	+		MMJJ_RS08735	0.19	+0.4
1,609,580	+		MMJJ_RS08735	0.27	+0.9
1,609,610	+		MMJJ_RS08735	0.31	+3.6
1,609,610	+		MMJJ_RS08735	0.31	-0.4
1,609,652	-		MMJJ_RS08735	0.37	+2.2
1,609,714	+		MMJJ_RS08735	0.45	-0.7
1,609,718	-		MMJJ_RS08735	0.46	+0.1
1,609,718	-		MMJJ_RS08735	0.46	+0.4
1,609,718	-		MMJJ_RS08735	0.46	+0.2
1,609,718	-		MMJJ_RS08735	0.46	-0.8
1,609,718	-		MMJJ_RS08735	0.46	-4.6
1,609,718	-		MMJJ_RS08735	0.46	+1.0
1,609,719	+		MMJJ_RS08735	0.46	-1.0
1,609,719	+		MMJJ_RS08735	0.46	-2.7
1,609,719	+		MMJJ_RS08735	0.46	-0.0
1,609,719	+		MMJJ_RS08735	0.46	-2.6
1,609,719	+		MMJJ_RS08735	0.46	-0.3
1,609,719	+		MMJJ_RS08735	0.46	+0.8
1,609,719	+		MMJJ_RS08735	0.46	-0.4
1,609,719	+		MMJJ_RS08735	0.46	+0.1
1,609,719	+		MMJJ_RS08735	0.46	-1.4
1,609,719	+		MMJJ_RS08735	0.46	+0.1
1,609,719	+		MMJJ_RS08735	0.46	+0.2
1,609,719	+		MMJJ_RS08735	0.46	-0.1
1,609,719	+		MMJJ_RS08735	0.46	-0.6
1,609,720	-		MMJJ_RS08735	0.46	+0.1
1,609,733	-		MMJJ_RS08735	0.48	+0.7
1,609,734	+		MMJJ_RS08735	0.48	+0.8
1,609,750	-		MMJJ_RS08735	0.50	-0.4
1,609,750	-		MMJJ_RS08735	0.50	+0.7
1,609,751	+		MMJJ_RS08735	0.50	+0.6
1,609,751	+		MMJJ_RS08735	0.50	-1.4
1,609,751	+		MMJJ_RS08735	0.50	+0.2
1,609,751	+		MMJJ_RS08735	0.50	+0.1
1,609,759	-		MMJJ_RS08735	0.51	-1.7
1,609,759	-		MMJJ_RS08735	0.51	+2.1
1,609,760	+		MMJJ_RS08735	0.51	+0.6
1,609,775	+		MMJJ_RS08735	0.53	+0.6
1,609,775	+		MMJJ_RS08735	0.53	+0.7
1,609,780	+		MMJJ_RS08735	0.54	-3.2
1,609,788	-		MMJJ_RS08735	0.55	+1.0
1,609,805	+		MMJJ_RS08735	0.57	+0.3
1,609,860	-		MMJJ_RS08735	0.65	-0.2
1,609,860	-		MMJJ_RS08735	0.65	+0.1
1,609,860	-		MMJJ_RS08735	0.65	-0.2
1,609,872	+		MMJJ_RS08735	0.66	-0.6
1,609,945	+		MMJJ_RS08735	0.76	-0.4
1,609,960	-		MMJJ_RS08735	0.78	+0.3
1,609,960	-		MMJJ_RS08735	0.78	+0.1
1,609,961	+		MMJJ_RS08735	0.78	-3.6
1,609,961	+		MMJJ_RS08735	0.78	-0.8
1,609,961	+		MMJJ_RS08735	0.78	+0.7
1,609,961	+		MMJJ_RS08735	0.78	+0.5
1,609,961	+		MMJJ_RS08735	0.78	+0.2
1,609,969	-		MMJJ_RS08735	0.79	+0.7
1,609,976	-		MMJJ_RS08735	0.80	-0.4
1,609,977	+		MMJJ_RS08735	0.80	-0.3
1,610,017	-		MMJJ_RS08735	0.86	-0.2
1,610,018	+		MMJJ_RS08735	0.86	-0.6
1,610,087	+				-2.3
1,610,112	+				-2.1
1,610,117	+				-0.1
1,610,119	-				-0.3
1,610,120	+				-0.5
1,610,128	-				+1.2
1,610,148	+				+0.4
1,610,159	-				-0.4
1,610,190	-				+0.1
1,610,223	-				-2.3
1,610,224	+				+0.3
1,610,224	+				-0.8
1,610,224	+				+0.2
1,610,224	+				-0.3
1,610,241	-		MMJJ_RS08740	0.10	-0.5
1,610,241	-		MMJJ_RS08740	0.10	+0.8
1,610,242	+		MMJJ_RS08740	0.11	+1.0
1,610,305	-		MMJJ_RS08740	0.20	-0.3
1,610,306	+		MMJJ_RS08740	0.20	-0.2
1,610,306	+		MMJJ_RS08740	0.20	-0.8
1,610,309	-		MMJJ_RS08740	0.20	-0.3
1,610,309	-		MMJJ_RS08740	0.20	+0.5
1,610,309	-		MMJJ_RS08740	0.20	+0.6
1,610,310	+		MMJJ_RS08740	0.21	+0.9
1,610,310	+		MMJJ_RS08740	0.21	-0.3
1,610,310	+		MMJJ_RS08740	0.21	-0.7
1,610,310	+		MMJJ_RS08740	0.21	+0.1
1,610,310	+		MMJJ_RS08740	0.21	-4.5
1,610,310	+		MMJJ_RS08740	0.21	-0.1
1,610,344	+		MMJJ_RS08740	0.26	+0.2
1,610,346	-		MMJJ_RS08740	0.26	+0.1
1,610,381	-		MMJJ_RS08740	0.31	+0.1