Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS01440

Experiment: McCas-formate glass attached

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS01430 and MMJJ_RS01435 are separated by 5 nucleotidesMMJJ_RS01435 and MMJJ_RS01440 are separated by 69 nucleotidesMMJJ_RS01440 and MMJJ_RS01445 are separated by 94 nucleotides MMJJ_RS01430: MMJJ_RS01430 - hypothetical protein, at 279,231 to 279,776 _RS01430 MMJJ_RS01435: MMJJ_RS01435 - 4Fe-4S binding protein, at 279,782 to 280,483 _RS01435 MMJJ_RS01440: MMJJ_RS01440 - NCS2 family permease, at 280,553 to 281,854 _RS01440 MMJJ_RS01445: MMJJ_RS01445 - O-phosphoserine--tRNA ligase, at 281,949 to 283,562 _RS01445 Position (kb) 280 281 282Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 279.567 kb on + strand, within MMJJ_RS01430at 279.574 kb on - strand, within MMJJ_RS01430at 279.574 kb on - strand, within MMJJ_RS01430at 279.588 kb on + strand, within MMJJ_RS01430at 279.611 kb on + strand, within MMJJ_RS01430at 279.611 kb on + strand, within MMJJ_RS01430at 279.635 kb on + strand, within MMJJ_RS01430at 279.640 kb on + strand, within MMJJ_RS01430at 279.677 kb on + strand, within MMJJ_RS01430at 279.681 kb on + strand, within MMJJ_RS01430at 279.747 kb on + strandat 279.779 kb on - strandat 279.779 kb on - strandat 279.780 kb on + strandat 279.814 kb on + strandat 279.869 kb on + strand, within MMJJ_RS01435at 279.869 kb on + strand, within MMJJ_RS01435at 279.873 kb on - strand, within MMJJ_RS01435at 279.982 kb on - strand, within MMJJ_RS01435at 279.982 kb on - strand, within MMJJ_RS01435at 279.983 kb on + strand, within MMJJ_RS01435at 279.983 kb on + strand, within MMJJ_RS01435at 279.985 kb on + strand, within MMJJ_RS01435at 280.016 kb on - strand, within MMJJ_RS01435at 280.017 kb on + strand, within MMJJ_RS01435at 280.018 kb on - strand, within MMJJ_RS01435at 280.019 kb on + strand, within MMJJ_RS01435at 280.035 kb on - strand, within MMJJ_RS01435at 280.040 kb on + strand, within MMJJ_RS01435at 280.040 kb on + strand, within MMJJ_RS01435at 280.063 kb on + strand, within MMJJ_RS01435at 280.063 kb on + strand, within MMJJ_RS01435at 280.091 kb on - strand, within MMJJ_RS01435at 280.091 kb on - strand, within MMJJ_RS01435at 280.095 kb on - strand, within MMJJ_RS01435at 280.100 kb on - strand, within MMJJ_RS01435at 280.101 kb on + strandat 280.124 kb on - strand, within MMJJ_RS01435at 280.125 kb on + strand, within MMJJ_RS01435at 280.125 kb on + strand, within MMJJ_RS01435at 280.148 kb on - strand, within MMJJ_RS01435at 280.148 kb on - strandat 280.148 kb on - strand, within MMJJ_RS01435at 280.148 kb on - strand, within MMJJ_RS01435at 280.149 kb on + strand, within MMJJ_RS01435at 280.149 kb on + strand, within MMJJ_RS01435at 280.149 kb on + strand, within MMJJ_RS01435at 280.149 kb on + strand, within MMJJ_RS01435at 280.152 kb on - strand, within MMJJ_RS01435at 280.153 kb on + strand, within MMJJ_RS01435at 280.164 kb on - strand, within MMJJ_RS01435at 280.164 kb on - strand, within MMJJ_RS01435at 280.165 kb on + strand, within MMJJ_RS01435at 280.165 kb on + strand, within MMJJ_RS01435at 280.213 kb on - strand, within MMJJ_RS01435at 280.213 kb on - strand, within MMJJ_RS01435at 280.213 kb on - strand, within MMJJ_RS01435at 280.213 kb on - strand, within MMJJ_RS01435at 280.214 kb on + strand, within MMJJ_RS01435at 280.214 kb on + strand, within MMJJ_RS01435at 280.214 kb on + strand, within MMJJ_RS01435at 280.214 kb on + strand, within MMJJ_RS01435at 280.215 kb on - strand, within MMJJ_RS01435at 280.215 kb on - strand, within MMJJ_RS01435at 280.215 kb on - strand, within MMJJ_RS01435at 280.216 kb on + strand, within MMJJ_RS01435at 280.216 kb on + strand, within MMJJ_RS01435at 280.221 kb on - strand, within MMJJ_RS01435at 280.221 kb on - strand, within MMJJ_RS01435at 280.245 kb on + strand, within MMJJ_RS01435at 280.272 kb on + strand, within MMJJ_RS01435at 280.305 kb on - strand, within MMJJ_RS01435at 280.342 kb on - strand, within MMJJ_RS01435at 280.343 kb on + strand, within MMJJ_RS01435at 280.343 kb on + strand, within MMJJ_RS01435at 280.349 kb on + strand, within MMJJ_RS01435at 280.391 kb on + strand, within MMJJ_RS01435at 280.393 kb on - strand, within MMJJ_RS01435at 280.394 kb on + strand, within MMJJ_RS01435at 280.394 kb on + strand, within MMJJ_RS01435at 280.395 kb on - strand, within MMJJ_RS01435at 280.396 kb on + strand, within MMJJ_RS01435at 280.424 kb on + strandat 280.467 kb on - strandat 280.468 kb on + strandat 280.473 kb on + strandat 280.473 kb on + strandat 280.503 kb on + strandat 280.513 kb on - strandat 280.517 kb on - strandat 280.518 kb on + strandat 280.536 kb on + strandat 280.599 kb on - strandat 280.599 kb on - strandat 280.614 kb on + strandat 280.667 kb on - strandat 280.668 kb on + strandat 280.692 kb on - strand, within MMJJ_RS01440at 280.692 kb on - strand, within MMJJ_RS01440at 280.693 kb on + strand, within MMJJ_RS01440at 280.693 kb on + strand, within MMJJ_RS01440at 280.712 kb on - strand, within MMJJ_RS01440at 280.712 kb on - strand, within MMJJ_RS01440at 280.720 kb on - strand, within MMJJ_RS01440at 280.720 kb on - strand, within MMJJ_RS01440at 280.720 kb on - strand, within MMJJ_RS01440at 280.797 kb on + strand, within MMJJ_RS01440at 280.799 kb on - strand, within MMJJ_RS01440at 280.818 kb on - strand, within MMJJ_RS01440at 280.880 kb on - strand, within MMJJ_RS01440at 280.880 kb on - strand, within MMJJ_RS01440at 280.880 kb on - strand, within MMJJ_RS01440at 280.907 kb on + strand, within MMJJ_RS01440at 280.939 kb on + strand, within MMJJ_RS01440at 281.040 kb on - strand, within MMJJ_RS01440at 281.041 kb on + strand, within MMJJ_RS01440at 281.080 kb on - strand, within MMJJ_RS01440at 281.081 kb on + strand, within MMJJ_RS01440at 281.115 kb on + strand, within MMJJ_RS01440at 281.121 kb on + strand, within MMJJ_RS01440at 281.121 kb on + strand, within MMJJ_RS01440at 281.122 kb on - strand, within MMJJ_RS01440at 281.122 kb on - strand, within MMJJ_RS01440at 281.123 kb on + strand, within MMJJ_RS01440at 281.195 kb on - strand, within MMJJ_RS01440at 281.251 kb on - strand, within MMJJ_RS01440at 281.284 kb on - strand, within MMJJ_RS01440at 281.361 kb on + strand, within MMJJ_RS01440at 281.368 kb on - strand, within MMJJ_RS01440at 281.410 kb on - strand, within MMJJ_RS01440at 281.411 kb on + strand, within MMJJ_RS01440at 281.478 kb on + strand, within MMJJ_RS01440at 281.562 kb on + strand, within MMJJ_RS01440at 281.634 kb on - strand, within MMJJ_RS01440at 281.638 kb on - strand, within MMJJ_RS01440at 281.656 kb on - strand, within MMJJ_RS01440at 281.656 kb on - strand, within MMJJ_RS01440at 281.656 kb on - strand, within MMJJ_RS01440at 281.657 kb on + strand, within MMJJ_RS01440at 281.680 kb on - strand, within MMJJ_RS01440at 281.680 kb on - strand, within MMJJ_RS01440at 281.680 kb on - strand, within MMJJ_RS01440at 281.680 kb on - strand, within MMJJ_RS01440at 281.680 kb on - strand, within MMJJ_RS01440at 281.680 kb on - strand, within MMJJ_RS01440at 281.681 kb on + strand, within MMJJ_RS01440at 281.681 kb on + strand, within MMJJ_RS01440at 281.681 kb on + strand, within MMJJ_RS01440at 281.681 kb on + strand, within MMJJ_RS01440at 281.681 kb on + strand, within MMJJ_RS01440at 281.681 kb on + strand, within MMJJ_RS01440at 281.681 kb on + strand, within MMJJ_RS01440at 281.726 kb on - strandat 281.741 kb on - strandat 281.748 kb on + strandat 281.748 kb on + strandat 281.753 kb on + strandat 281.754 kb on - strandat 281.755 kb on + strandat 281.755 kb on + strandat 281.755 kb on + strandat 281.795 kb on - strandat 281.812 kb on - strandat 281.813 kb on + strandat 281.874 kb on + strandat 281.874 kb on + strandat 281.876 kb on - strandat 281.879 kb on + strandat 281.883 kb on - strandat 281.884 kb on + strandat 281.886 kb on + strandat 281.894 kb on + strandat 282.634 kb on + strandat 282.677 kb on - strand, within MMJJ_RS01445

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas-formate glass attached
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279,567 + MMJJ_RS01430 0.62 +0.2
279,574 - MMJJ_RS01430 0.63 -1.1
279,574 - MMJJ_RS01430 0.63 -2.5
279,588 + MMJJ_RS01430 0.65 -0.3
279,611 + MMJJ_RS01430 0.70 -0.6
279,611 + MMJJ_RS01430 0.70 +1.3
279,635 + MMJJ_RS01430 0.74 +0.4
279,640 + MMJJ_RS01430 0.75 -1.5
279,677 + MMJJ_RS01430 0.82 -3.6
279,681 + MMJJ_RS01430 0.82 +0.8
279,747 + +0.4
279,779 - +0.3
279,779 - +1.2
279,780 + -0.3
279,814 + +0.3
279,869 + MMJJ_RS01435 0.12 -0.0
279,869 + MMJJ_RS01435 0.12 -0.7
279,873 - MMJJ_RS01435 0.13 -0.2
279,982 - MMJJ_RS01435 0.28 -1.5
279,982 - MMJJ_RS01435 0.28 -0.5
279,983 + MMJJ_RS01435 0.29 -0.3
279,983 + MMJJ_RS01435 0.29 -0.3
279,985 + MMJJ_RS01435 0.29 +1.4
280,016 - MMJJ_RS01435 0.33 -0.3
280,017 + MMJJ_RS01435 0.33 +0.0
280,018 - MMJJ_RS01435 0.34 -0.2
280,019 + MMJJ_RS01435 0.34 -0.6
280,035 - MMJJ_RS01435 0.36 -0.2
280,040 + MMJJ_RS01435 0.37 -2.5
280,040 + MMJJ_RS01435 0.37 -1.2
280,063 + MMJJ_RS01435 0.40 -0.2
280,063 + MMJJ_RS01435 0.40 -1.3
280,091 - MMJJ_RS01435 0.44 +0.2
280,091 - MMJJ_RS01435 0.44 +0.4
280,095 - MMJJ_RS01435 0.45 -0.2
280,100 - MMJJ_RS01435 0.45 +1.0
280,101 + -1.5
280,124 - MMJJ_RS01435 0.49 +0.3
280,125 + MMJJ_RS01435 0.49 -0.1
280,125 + MMJJ_RS01435 0.49 +0.0
280,148 - MMJJ_RS01435 0.52 +1.0
280,148 - +2.1
280,148 - MMJJ_RS01435 0.52 -0.0
280,148 - MMJJ_RS01435 0.52 +1.2
280,149 + MMJJ_RS01435 0.52 -0.3
280,149 + MMJJ_RS01435 0.52 -0.5
280,149 + MMJJ_RS01435 0.52 +0.5
280,149 + MMJJ_RS01435 0.52 -0.8
280,152 - MMJJ_RS01435 0.53 -1.1
280,153 + MMJJ_RS01435 0.53 +0.8
280,164 - MMJJ_RS01435 0.54 +1.1
280,164 - MMJJ_RS01435 0.54 -0.1
280,165 + MMJJ_RS01435 0.55 +0.8
280,165 + MMJJ_RS01435 0.55 +0.7
280,213 - MMJJ_RS01435 0.61 +0.2
280,213 - MMJJ_RS01435 0.61 -0.6
280,213 - MMJJ_RS01435 0.61 -0.1
280,213 - MMJJ_RS01435 0.61 -0.8
280,214 + MMJJ_RS01435 0.62 -1.9
280,214 + MMJJ_RS01435 0.62 -0.1
280,214 + MMJJ_RS01435 0.62 -0.0
280,214 + MMJJ_RS01435 0.62 -2.0
280,215 - MMJJ_RS01435 0.62 -1.2
280,215 - MMJJ_RS01435 0.62 -0.1
280,215 - MMJJ_RS01435 0.62 +0.3
280,216 + MMJJ_RS01435 0.62 +2.0
280,216 + MMJJ_RS01435 0.62 -0.0
280,221 - MMJJ_RS01435 0.63 +0.3
280,221 - MMJJ_RS01435 0.63 +0.8
280,245 + MMJJ_RS01435 0.66 -0.1
280,272 + MMJJ_RS01435 0.70 -3.7
280,305 - MMJJ_RS01435 0.75 +0.8
280,342 - MMJJ_RS01435 0.80 +0.1
280,343 + MMJJ_RS01435 0.80 +0.7
280,343 + MMJJ_RS01435 0.80 +0.4
280,349 + MMJJ_RS01435 0.81 -0.3
280,391 + MMJJ_RS01435 0.87 +1.7
280,393 - MMJJ_RS01435 0.87 -0.3
280,394 + MMJJ_RS01435 0.87 -4.1
280,394 + MMJJ_RS01435 0.87 -2.0
280,395 - MMJJ_RS01435 0.87 -0.2
280,396 + MMJJ_RS01435 0.87 +0.5
280,424 + +1.1
280,467 - -1.9
280,468 + -1.2
280,473 + -1.2
280,473 + +0.8
280,503 + -0.5
280,513 - -0.1
280,517 - +0.6
280,518 + +0.1
280,536 + +0.6
280,599 - +0.7
280,599 - +0.2
280,614 + -3.0
280,667 - -0.1
280,668 + +0.7
280,692 - MMJJ_RS01440 0.11 -1.0
280,692 - MMJJ_RS01440 0.11 +0.4
280,693 + MMJJ_RS01440 0.11 +0.1
280,693 + MMJJ_RS01440 0.11 -1.3
280,712 - MMJJ_RS01440 0.12 -0.6
280,712 - MMJJ_RS01440 0.12 -0.1
280,720 - MMJJ_RS01440 0.13 +1.1
280,720 - MMJJ_RS01440 0.13 -1.3
280,720 - MMJJ_RS01440 0.13 -0.2
280,797 + MMJJ_RS01440 0.19 -0.1
280,799 - MMJJ_RS01440 0.19 -0.3
280,818 - MMJJ_RS01440 0.20 +0.3
280,880 - MMJJ_RS01440 0.25 +0.6
280,880 - MMJJ_RS01440 0.25 +0.3
280,880 - MMJJ_RS01440 0.25 +0.5
280,907 + MMJJ_RS01440 0.27 -0.1
280,939 + MMJJ_RS01440 0.30 -2.0
281,040 - MMJJ_RS01440 0.37 -2.1
281,041 + MMJJ_RS01440 0.37 -0.1
281,080 - MMJJ_RS01440 0.40 -0.5
281,081 + MMJJ_RS01440 0.41 -0.6
281,115 + MMJJ_RS01440 0.43 +0.5
281,121 + MMJJ_RS01440 0.44 +0.4
281,121 + MMJJ_RS01440 0.44 -0.2
281,122 - MMJJ_RS01440 0.44 -1.9
281,122 - MMJJ_RS01440 0.44 -2.3
281,123 + MMJJ_RS01440 0.44 +0.2
281,195 - MMJJ_RS01440 0.49 +0.0
281,251 - MMJJ_RS01440 0.54 +0.4
281,284 - MMJJ_RS01440 0.56 +0.1
281,361 + MMJJ_RS01440 0.62 -0.4
281,368 - MMJJ_RS01440 0.63 -0.4
281,410 - MMJJ_RS01440 0.66 -0.5
281,411 + MMJJ_RS01440 0.66 -1.4
281,478 + MMJJ_RS01440 0.71 +0.7
281,562 + MMJJ_RS01440 0.77 -0.8
281,634 - MMJJ_RS01440 0.83 +0.5
281,638 - MMJJ_RS01440 0.83 -1.7
281,656 - MMJJ_RS01440 0.85 -0.1
281,656 - MMJJ_RS01440 0.85 -3.6
281,656 - MMJJ_RS01440 0.85 -1.7
281,657 + MMJJ_RS01440 0.85 +0.2
281,680 - MMJJ_RS01440 0.87 -0.3
281,680 - MMJJ_RS01440 0.87 +0.0
281,680 - MMJJ_RS01440 0.87 +1.0
281,680 - MMJJ_RS01440 0.87 -2.0
281,680 - MMJJ_RS01440 0.87 +0.3
281,680 - MMJJ_RS01440 0.87 +0.1
281,681 + MMJJ_RS01440 0.87 -4.1
281,681 + MMJJ_RS01440 0.87 -0.7
281,681 + MMJJ_RS01440 0.87 -0.5
281,681 + MMJJ_RS01440 0.87 +0.5
281,681 + MMJJ_RS01440 0.87 -2.1
281,681 + MMJJ_RS01440 0.87 +1.0
281,681 + MMJJ_RS01440 0.87 -0.2
281,726 - +0.5
281,741 - +0.9
281,748 + +0.2
281,748 + +0.3
281,753 + -0.2
281,754 - -0.8
281,755 + +0.1
281,755 + +0.9
281,755 + -0.5
281,795 - +1.1
281,812 - -2.4
281,813 + +0.4
281,874 + +0.6
281,874 + +0.5
281,876 - -0.1
281,879 + +0.4
281,883 - -1.2
281,884 + -1.6
281,886 + -2.5
281,894 + -0.0
282,634 + +0.2
282,677 - MMJJ_RS01445 0.45 +0.6

Or see this region's nucleotide sequence