Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3881c

Experiment: 7H9 with Dodecyl Sulfate 0.02 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Dodecyl Sulfate 0.02 vol%
4,359,600	+				-1.4
4,359,648	+				-0.2
4,359,649	-				-1.2
4,359,679	+				-0.2
4,359,680	-				-0.6
4,359,754	+				+0.4
4,359,754	+				+1.7
4,359,754	+				-1.6
4,359,755	-				-0.1
4,359,755	-				-0.1
4,359,755	-				-0.5
4,359,755	-				+0.9
4,359,755	-				+0.1
4,359,755	-				-0.1
4,359,755	-				-1.1
4,359,774	-				+0.3
4,359,776	+				-0.8
4,359,776	+				-0.1
4,359,777	-				-0.3
4,359,777	-				-0.5
4,359,777	-				+0.2
4,359,777	-				+0.6
4,360,006	+				-0.5
4,360,006	+				-0.5
4,360,007	-				-0.6
4,360,007	-				+1.7
4,360,007	-				-0.3
4,360,011	-				-0.2
4,360,029	+				-0.6
4,360,029	+				+1.7
4,360,039	+				+1.1
4,360,052	-				-0.4
4,360,067	+				+0.6
4,360,118	-				-0.8
4,360,201	-				-0.2
4,360,201	-				-0.2
4,360,275	+		Rv3880c	0.22	+0.0
4,360,275	+		Rv3880c	0.22	-0.3
4,360,276	-		Rv3880c	0.22	-0.1
4,360,475	+		Rv3880c	0.79	-0.5
4,360,557	+				-1.1
4,360,557	+				+0.1
4,360,557	+				+0.4
4,360,557	+				-0.1
4,360,558	-				+0.1
4,360,617	-				-1.0
4,360,744	+		Rv3881c	0.15	-1.3
4,360,744	+		Rv3881c	0.15	+2.7
4,361,135	+		Rv3881c	0.43	-0.7
4,361,135	+		Rv3881c	0.43	+1.7
4,361,135	+		Rv3881c	0.43	-1.8
4,361,177	+		Rv3881c	0.46	-0.3
4,361,177	+		Rv3881c	0.46	-0.3
4,361,219	+		Rv3881c	0.49	+0.0
4,361,239	+		Rv3881c	0.50	+0.2
4,361,239	+		Rv3881c	0.50	-0.4
4,361,239	+		Rv3881c	0.50	-0.5
4,361,239	+		Rv3881c	0.50	-0.6
4,361,240	-		Rv3881c	0.50	-0.5
4,361,249	+		Rv3881c	0.51	+1.4
4,361,249	+		Rv3881c	0.51	-0.3
4,361,249	+		Rv3881c	0.51	-0.4
4,361,249	+		Rv3881c	0.51	-2.0
4,361,249	+		Rv3881c	0.51	-0.6
4,361,249	+		Rv3881c	0.51	-0.1
4,361,250	-		Rv3881c	0.51	+0.5
4,361,250	-		Rv3881c	0.51	-0.2
4,361,294	+		Rv3881c	0.54	-0.6
4,361,294	+		Rv3881c	0.54	-0.2
4,361,294	+		Rv3881c	0.54	-0.6
4,361,294	+		Rv3881c	0.54	-0.3
4,361,295	-		Rv3881c	0.54	-0.5
4,361,295	-		Rv3881c	0.54	-1.7
4,361,295	-		Rv3881c	0.54	-0.3
4,361,341	+		Rv3881c	0.58	-0.8
4,361,341	+		Rv3881c	0.58	-0.3
4,361,571	+		Rv3881c	0.74	+1.7
4,361,578	+		Rv3881c	0.75	-0.6
4,361,684	+		Rv3881c	0.83	-0.5
4,361,685	-		Rv3881c	0.83	-0.6
4,361,685	-		Rv3881c	0.83	-0.8
4,361,751	-		Rv3881c	0.87	-0.2
4,361,926	-				+0.2
4,361,948	+				-1.2
4,361,948	+				-0.2
4,361,948	+				+1.7
4,361,948	+				-0.2
4,361,948	+				-0.2
4,361,949	-				-0.5
4,361,949	-				+0.1
4,361,957	+				-0.4
4,361,966	+				-0.8
4,361,987	+				+0.7
4,361,987	+				-0.4
4,362,148	+				+0.1
4,362,168	+				-0.3
4,362,168	+				-0.5
4,362,168	+				-0.0
4,362,169	-				+2.2
4,362,169	-				-2.2
4,362,197	+		Rv3882c	0.12	-0.0
4,362,198	-		Rv3882c	0.12	+0.3
4,362,357	+		Rv3882c	0.23	-1.1
4,362,357	+		Rv3882c	0.23	-0.1
4,362,357	+		Rv3882c	0.23	-0.5
4,362,358	-		Rv3882c	0.23	+0.1
4,362,358	-		Rv3882c	0.23	+0.3
4,362,358	-		Rv3882c	0.23	-0.1
4,362,393	-		Rv3882c	0.26	-0.3
4,362,477	-		Rv3882c	0.32	-0.8
4,362,602	+		Rv3882c	0.41	-0.1
4,362,602	+		Rv3882c	0.41	-0.2
4,362,602	+		Rv3882c	0.41	+1.7
4,362,602	+		Rv3882c	0.41	-0.6
4,362,602	+		Rv3882c	0.41	+0.2
4,362,602	+		Rv3882c	0.41	+0.2
4,362,602	+		Rv3882c	0.41	+0.7
4,362,602	+		Rv3882c	0.41	-0.3
4,362,602	+		Rv3882c	0.41	-0.1
4,362,602	+		Rv3882c	0.41	-0.3
4,362,603	-		Rv3882c	0.41	-0.1
4,362,603	-		Rv3882c	0.41	-0.6
4,362,603	-		Rv3882c	0.41	+1.8
4,362,603	-		Rv3882c	0.41	-0.2
4,362,603	-		Rv3882c	0.41	-0.5
4,362,603	-		Rv3882c	0.41	+0.7
4,362,603	-		Rv3882c	0.41	-0.6
4,362,627	+		Rv3882c	0.43	-0.3
4,362,628	-		Rv3882c	0.43	+1.0
4,362,639	+		Rv3882c	0.44	+0.2
4,362,639	+		Rv3882c	0.44	+0.3
4,362,639	+		Rv3882c	0.44	-0.3
4,362,705	+		Rv3882c	0.48	-2.3
4,362,705	+		Rv3882c	0.48	-1.6