Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1980c

Experiment: 7H9 with Dodecyl Sulfate 0.02 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Dodecyl Sulfate 0.02 vol%
2,222,397	+		Rv1979c	0.47	-0.5
2,222,399	+		Rv1979c	0.47	+0.5
2,222,399	+		Rv1979c	0.47	+0.2
2,222,399	+		Rv1979c	0.47	+0.7
2,222,399	+		Rv1979c	0.47	-0.5
2,222,399	+		Rv1979c	0.47	-0.3
2,222,399	+		Rv1979c	0.47	-0.2
2,222,399	+		Rv1979c	0.47	+0.0
2,222,400	-		Rv1979c	0.47	+0.1
2,222,400	-		Rv1979c	0.47	+1.0
2,222,400	-		Rv1979c	0.47	+0.1
2,222,476	+		Rv1979c	0.52	-0.3
2,222,477	-		Rv1979c	0.52	+0.1
2,222,552	-		Rv1979c	0.58	-0.6
2,222,567	-		Rv1979c	0.59	+0.0
2,222,587	+		Rv1979c	0.60	-1.1
2,222,588	-		Rv1979c	0.60	-0.8
2,222,588	-		Rv1979c	0.60	-0.5
2,222,887	+		Rv1979c	0.81	-1.3
2,222,887	+		Rv1979c	0.81	-2.6
2,222,929	+		Rv1979c	0.84	-0.1
2,222,929	+		Rv1979c	0.84	+1.7
2,222,953	+		Rv1979c	0.85	-0.4
2,222,954	-		Rv1979c	0.85	+0.2
2,222,954	-		Rv1979c	0.85	+0.2
2,223,006	+		Rv1979c	0.89	-0.6
2,223,013	+		Rv1979c	0.89	-1.5
2,223,013	+		Rv1979c	0.89	-0.3
2,223,063	+				+0.7
2,223,063	+				-0.4
2,223,064	-				+0.6
2,223,139	+				+3.3
2,223,180	+				-0.1
2,223,180	+				-0.6
2,223,181	-				+0.4
2,223,196	-				-0.2
2,223,205	+				+0.2
2,223,344	+				+0.0
2,223,382	+				-0.1
2,223,382	+				+0.1
2,223,383	-				-0.5
2,223,470	+		Rv1980c	0.18	-1.9
2,223,502	+		Rv1980c	0.23	-1.0
2,223,600	-		Rv1980c	0.37	-1.5
2,223,600	-		Rv1980c	0.37	-0.0
2,223,600	-		Rv1980c	0.37	-0.1
2,223,617	+		Rv1980c	0.40	-0.8
2,223,644	+		Rv1980c	0.44	+0.7
2,223,644	+		Rv1980c	0.44	+1.7
2,223,644	+		Rv1980c	0.44	-0.8
2,223,644	+		Rv1980c	0.44	+0.1
2,223,644	+		Rv1980c	0.44	-0.3
2,223,681	-		Rv1980c	0.49	-0.6
2,223,705	+		Rv1980c	0.53	-0.0
2,223,705	+		Rv1980c	0.53	-1.1
2,223,731	+		Rv1980c	0.56	+1.7
2,223,732	-		Rv1980c	0.57	-1.3
2,223,749	+		Rv1980c	0.59	-1.7
2,223,758	+		Rv1980c	0.60	+1.1
2,223,758	+		Rv1980c	0.60	-0.4
2,223,824	+		Rv1980c	0.70	-1.1
2,223,881	+		Rv1980c	0.78	-0.4
2,223,881	+		Rv1980c	0.78	+1.7
2,223,881	+		Rv1980c	0.78	-2.1
2,223,948	-		Rv1980c	0.88	-1.1
2,224,050	-				-0.2
2,224,096	+				-0.5
2,224,117	+				+0.1
2,224,117	+				-0.7
2,224,118	-				-0.5
2,224,118	-				-1.3
2,224,161	+				+1.0
2,224,162	-				-0.6
2,224,221	+				-0.3
2,224,265	+				-0.9
2,224,265	+				-1.2
2,224,265	+				-0.4
2,224,266	-				+0.0
2,224,269	+				-0.5
2,224,269	+				+0.7
2,224,269	+				-0.1
2,224,270	-				+0.5
2,224,270	-				-0.3
2,224,270	-				-0.1
2,224,413	+		Rv1981c	0.20	-0.5
2,224,413	+		Rv1981c	0.20	+0.6
2,224,413	+		Rv1981c	0.20	-0.2
2,224,413	+		Rv1981c	0.20	-0.2
2,224,414	-		Rv1981c	0.20	+0.0
2,224,422	+		Rv1981c	0.21	-0.5
2,224,422	+		Rv1981c	0.21	-0.9
2,224,422	+		Rv1981c	0.21	+0.1
2,224,423	-		Rv1981c	0.21	-1.0
2,224,458	+		Rv1981c	0.25	+0.1
2,224,518	+		Rv1981c	0.31	+0.7
2,224,518	+		Rv1981c	0.31	+0.1
2,224,519	-		Rv1981c	0.31	-0.3
2,224,578	+		Rv1981c	0.37	+1.7
2,224,587	+		Rv1981c	0.38	-0.5
2,224,587	+		Rv1981c	0.38	+0.1
2,224,587	+		Rv1981c	0.38	-1.2
2,224,588	-		Rv1981c	0.38	-0.7
2,224,588	-		Rv1981c	0.38	-0.7
2,224,590	+		Rv1981c	0.38	-0.2
2,224,591	-		Rv1981c	0.38	+2.7
2,224,591	-		Rv1981c	0.38	+1.5
2,224,651	+		Rv1981c	0.44	-1.0
2,224,652	-		Rv1981c	0.45	+2.4
2,224,668	+		Rv1981c	0.46	-0.5
2,224,668	+		Rv1981c	0.46	+0.2
2,224,668	+		Rv1981c	0.46	+0.2
2,224,669	-		Rv1981c	0.46	-0.5
2,224,680	+		Rv1981c	0.47	-0.6
2,224,681	-		Rv1981c	0.48	-0.4
2,224,756	-		Rv1981c	0.55	+0.5
2,224,758	+		Rv1981c	0.56	-0.4
2,224,759	-		Rv1981c	0.56	-0.0
2,224,792	-		Rv1981c	0.59	-0.1
2,224,792	-		Rv1981c	0.59	-0.4
2,224,792	-		Rv1981c	0.59	-0.4
2,224,867	-		Rv1981c	0.67	-1.0
2,224,867	-		Rv1981c	0.67	+0.5
2,224,867	-		Rv1981c	0.67	+2.2
2,224,867	-		Rv1981c	0.67	-0.2