Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS09300

Experiment: McCas-formate glass attached

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS03385 and MMJJ_RS03390 are separated by 0 nucleotidesMMJJ_RS03390 and MMJJ_RS09295 are separated by 7 nucleotidesMMJJ_RS09295 and MMJJ_RS03395 are separated by 24 nucleotidesMMJJ_RS03395 and MMJJ_RS09300 are separated by 12 nucleotidesMMJJ_RS09300 and MMJJ_RS03400 are separated by 11 nucleotidesMMJJ_RS03400 and MMJJ_RS03405 overlap by 8 nucleotides MMJJ_RS03385: MMJJ_RS03385 - hypothetical protein, at 639,460 to 639,825 _RS03385 MMJJ_RS03390: MMJJ_RS03390 - hypothetical protein, at 639,826 to 640,062 _RS03390 MMJJ_RS09295: MMJJ_RS09295 - hypothetical protein, at 640,070 to 640,225 _RS09295 MMJJ_RS03395: MMJJ_RS03395 - hypothetical protein, at 640,250 to 640,474 _RS03395 MMJJ_RS09300: MMJJ_RS09300 - hypothetical protein, at 640,487 to 640,660 _RS09300 MMJJ_RS03400: MMJJ_RS03400 - hypothetical protein, at 640,672 to 640,908 _RS03400 MMJJ_RS03405: MMJJ_RS03405 - hypothetical protein, at 640,901 to 642,241 _RS03405 Position (kb) 640 641Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 639.505 kb on + strand, within MMJJ_RS03385at 639.523 kb on + strandat 639.563 kb on - strand, within MMJJ_RS03385at 639.575 kb on + strand, within MMJJ_RS03385at 639.591 kb on - strand, within MMJJ_RS03385at 639.592 kb on + strand, within MMJJ_RS03385at 639.623 kb on + strand, within MMJJ_RS03385at 639.652 kb on + strand, within MMJJ_RS03385at 639.690 kb on + strand, within MMJJ_RS03385at 639.694 kb on - strand, within MMJJ_RS03385at 639.715 kb on - strand, within MMJJ_RS03385at 639.715 kb on - strand, within MMJJ_RS03385at 639.743 kb on - strand, within MMJJ_RS03385at 639.743 kb on - strand, within MMJJ_RS03385at 639.744 kb on + strand, within MMJJ_RS03385at 639.747 kb on - strand, within MMJJ_RS03385at 639.748 kb on + strand, within MMJJ_RS03385at 639.862 kb on + strand, within MMJJ_RS03390at 640.071 kb on - strandat 640.072 kb on + strandat 640.075 kb on - strandat 640.075 kb on - strandat 640.075 kb on - strandat 640.075 kb on - strandat 640.075 kb on - strandat 640.075 kb on - strandat 640.077 kb on - strandat 640.111 kb on - strand, within MMJJ_RS09295at 640.330 kb on - strand, within MMJJ_RS03395at 640.330 kb on - strand, within MMJJ_RS03395at 640.332 kb on - strand, within MMJJ_RS03395at 640.332 kb on - strand, within MMJJ_RS03395at 640.333 kb on + strand, within MMJJ_RS03395at 640.456 kb on - strandat 640.457 kb on + strandat 640.462 kb on - strandat 640.488 kb on - strandat 640.488 kb on - strandat 640.489 kb on + strandat 640.500 kb on + strandat 640.577 kb on - strand, within MMJJ_RS09300at 640.640 kb on - strand, within MMJJ_RS09300at 641.073 kb on - strand, within MMJJ_RS03405at 641.073 kb on - strand, within MMJJ_RS03405at 641.162 kb on + strand, within MMJJ_RS03405at 641.218 kb on + strand, within MMJJ_RS03405at 641.234 kb on - strand, within MMJJ_RS03405at 641.236 kb on - strand, within MMJJ_RS03405at 641.236 kb on - strand, within MMJJ_RS03405at 641.237 kb on + strand, within MMJJ_RS03405at 641.348 kb on + strand, within MMJJ_RS03405at 641.349 kb on - strand, within MMJJ_RS03405at 641.349 kb on - strand, within MMJJ_RS03405at 641.349 kb on - strand, within MMJJ_RS03405at 641.370 kb on + strand, within MMJJ_RS03405at 641.370 kb on + strand, within MMJJ_RS03405at 641.370 kb on + strand, within MMJJ_RS03405at 641.372 kb on - strand, within MMJJ_RS03405at 641.373 kb on + strand, within MMJJ_RS03405at 641.374 kb on - strand, within MMJJ_RS03405at 641.374 kb on - strand, within MMJJ_RS03405at 641.374 kb on - strand, within MMJJ_RS03405at 641.374 kb on - strand, within MMJJ_RS03405at 641.375 kb on + strand, within MMJJ_RS03405at 641.375 kb on + strand, within MMJJ_RS03405at 641.375 kb on + strand, within MMJJ_RS03405at 641.375 kb on + strand, within MMJJ_RS03405at 641.375 kb on + strand, within MMJJ_RS03405at 641.422 kb on - strand, within MMJJ_RS03405at 641.423 kb on + strand, within MMJJ_RS03405at 641.423 kb on + strand, within MMJJ_RS03405at 641.438 kb on + strand, within MMJJ_RS03405at 641.487 kb on + strand, within MMJJ_RS03405at 641.509 kb on - strand, within MMJJ_RS03405at 641.510 kb on + strand, within MMJJ_RS03405at 641.513 kb on + strand, within MMJJ_RS03405at 641.513 kb on + strand, within MMJJ_RS03405at 641.513 kb on + strand, within MMJJ_RS03405at 641.514 kb on - strand, within MMJJ_RS03405at 641.517 kb on - strand, within MMJJ_RS03405at 641.607 kb on + strand, within MMJJ_RS03405

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas-formate glass attached
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639,505 + MMJJ_RS03385 0.12 +0.7
639,523 + +2.8
639,563 - MMJJ_RS03385 0.28 -0.9
639,575 + MMJJ_RS03385 0.31 +0.9
639,591 - MMJJ_RS03385 0.36 +0.1
639,592 + MMJJ_RS03385 0.36 -0.8
639,623 + MMJJ_RS03385 0.45 +0.3
639,652 + MMJJ_RS03385 0.52 +1.2
639,690 + MMJJ_RS03385 0.63 +0.3
639,694 - MMJJ_RS03385 0.64 +1.1
639,715 - MMJJ_RS03385 0.70 -0.3
639,715 - MMJJ_RS03385 0.70 -0.1
639,743 - MMJJ_RS03385 0.77 -0.1
639,743 - MMJJ_RS03385 0.77 +0.4
639,744 + MMJJ_RS03385 0.78 -2.1
639,747 - MMJJ_RS03385 0.78 -0.0
639,748 + MMJJ_RS03385 0.79 -0.3
639,862 + MMJJ_RS03390 0.15 -0.7
640,071 - -2.2
640,072 + +1.4
640,075 - +0.2
640,075 - +0.6
640,075 - +0.3
640,075 - +0.8
640,075 - -2.1
640,075 - +0.4
640,077 - +0.3
640,111 - MMJJ_RS09295 0.26 -0.1
640,330 - MMJJ_RS03395 0.36 +0.4
640,330 - MMJJ_RS03395 0.36 -0.5
640,332 - MMJJ_RS03395 0.36 -1.1
640,332 - MMJJ_RS03395 0.36 +0.3
640,333 + MMJJ_RS03395 0.37 +0.6
640,456 - -3.3
640,457 + -0.9
640,462 - +0.4
640,488 - -0.2
640,488 - +0.9
640,489 + +0.2
640,500 + +0.7
640,577 - MMJJ_RS09300 0.52 -0.2
640,640 - MMJJ_RS09300 0.88 +0.7
641,073 - MMJJ_RS03405 0.13 -1.2
641,073 - MMJJ_RS03405 0.13 +1.0
641,162 + MMJJ_RS03405 0.19 -0.2
641,218 + MMJJ_RS03405 0.24 +0.2
641,234 - MMJJ_RS03405 0.25 -0.3
641,236 - MMJJ_RS03405 0.25 -0.6
641,236 - MMJJ_RS03405 0.25 -3.4
641,237 + MMJJ_RS03405 0.25 +0.9
641,348 + MMJJ_RS03405 0.33 +0.6
641,349 - MMJJ_RS03405 0.33 -0.3
641,349 - MMJJ_RS03405 0.33 +0.5
641,349 - MMJJ_RS03405 0.33 +0.2
641,370 + MMJJ_RS03405 0.35 -2.1
641,370 + MMJJ_RS03405 0.35 -0.1
641,370 + MMJJ_RS03405 0.35 -0.3
641,372 - MMJJ_RS03405 0.35 +1.2
641,373 + MMJJ_RS03405 0.35 +1.1
641,374 - MMJJ_RS03405 0.35 +0.5
641,374 - MMJJ_RS03405 0.35 +0.3
641,374 - MMJJ_RS03405 0.35 -0.2
641,374 - MMJJ_RS03405 0.35 -4.4
641,375 + MMJJ_RS03405 0.35 +0.7
641,375 + MMJJ_RS03405 0.35 +1.0
641,375 + MMJJ_RS03405 0.35 +0.2
641,375 + MMJJ_RS03405 0.35 -0.9
641,375 + MMJJ_RS03405 0.35 +0.6
641,422 - MMJJ_RS03405 0.39 -1.2
641,423 + MMJJ_RS03405 0.39 -0.2
641,423 + MMJJ_RS03405 0.39 +1.2
641,438 + MMJJ_RS03405 0.40 -0.3
641,487 + MMJJ_RS03405 0.44 +0.4
641,509 - MMJJ_RS03405 0.45 -2.5
641,510 + MMJJ_RS03405 0.45 -0.5
641,513 + MMJJ_RS03405 0.46 -0.3
641,513 + MMJJ_RS03405 0.46 -0.5
641,513 + MMJJ_RS03405 0.46 -0.0
641,514 - MMJJ_RS03405 0.46 +0.4
641,517 - MMJJ_RS03405 0.46 +0.1
641,607 + MMJJ_RS03405 0.53 +0.1

Or see this region's nucleotide sequence