Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08930

Experiment: McCas-formate glass attached

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas-formate glass attached
1,646,297	+		MMJJ_RS08925	0.29	-1.5
1,646,330	+		MMJJ_RS08925	0.33	+0.0
1,646,335	+		MMJJ_RS08925	0.34	+0.9
1,646,339	-		MMJJ_RS08925	0.34	-3.2
1,646,339	-		MMJJ_RS08925	0.34	+1.5
1,646,391	-		MMJJ_RS08925	0.41	+0.1
1,646,415	-		MMJJ_RS08925	0.44	+0.4
1,646,415	-		MMJJ_RS08925	0.44	-4.9
1,646,415	-		MMJJ_RS08925	0.44	-4.4
1,646,416	+		MMJJ_RS08925	0.44	+1.0
1,646,416	+		MMJJ_RS08925	0.44	-1.1
1,646,434	-		MMJJ_RS08925	0.46	-2.9
1,646,434	-		MMJJ_RS08925	0.46	+0.8
1,646,434	-		MMJJ_RS08925	0.46	-1.2
1,646,470	-		MMJJ_RS08925	0.51	+0.4
1,646,471	+		MMJJ_RS08925	0.51	-3.3
1,646,510	-		MMJJ_RS08925	0.56	-0.5
1,646,510	-		MMJJ_RS08925	0.56	-0.1
1,646,510	-		MMJJ_RS08925	0.56	-0.8
1,646,511	+		MMJJ_RS08925	0.56	+0.7
1,646,511	+				-1.0
1,646,511	+		MMJJ_RS08925	0.56	+0.0
1,646,511	+		MMJJ_RS08925	0.56	+1.3
1,646,513	+		MMJJ_RS08925	0.56	-0.2
1,646,513	+		MMJJ_RS08925	0.56	-2.5
1,646,531	-		MMJJ_RS08925	0.58	-3.1
1,646,531	-		MMJJ_RS08925	0.58	-0.6
1,646,532	+		MMJJ_RS08925	0.58	-3.2
1,646,532	+		MMJJ_RS08925	0.58	-0.1
1,646,532	+		MMJJ_RS08925	0.58	-3.6
1,646,557	-		MMJJ_RS08925	0.62	-4.0
1,646,557	-		MMJJ_RS08925	0.62	-4.8
1,646,557	-		MMJJ_RS08925	0.62	+0.4
1,646,558	+		MMJJ_RS08925	0.62	-2.8
1,646,558	+				+0.6
1,646,558	+		MMJJ_RS08925	0.62	+1.6
1,646,558	+		MMJJ_RS08925	0.62	-4.1
1,646,558	+		MMJJ_RS08925	0.62	-4.0
1,646,558	+		MMJJ_RS08925	0.62	+0.0
1,646,560	+		MMJJ_RS08925	0.62	-0.9
1,646,615	+		MMJJ_RS08925	0.69	-1.2
1,646,684	+		MMJJ_RS08925	0.77	+0.2
1,646,684	+		MMJJ_RS08925	0.77	-3.9
1,646,764	-		MMJJ_RS08925	0.88	-0.1
1,646,774	+		MMJJ_RS08925	0.89	+0.3
1,646,796	-				+0.1
1,646,799	-				+0.4
1,646,799	-				+0.0
1,646,799	-				+0.1
1,646,799	-				+0.4
1,646,800	+				-2.4
1,646,847	-				+0.4
1,646,891	+				+0.4
1,646,903	-				+0.2
1,646,907	-				-2.9
1,646,908	+				-0.4
1,646,908	+				-0.1
1,646,920	-				+0.0
1,646,920	-				+0.1
1,646,920	-				-1.1
1,646,920	-				+1.1
1,646,920	-				-0.1
1,646,921	+				+1.0
1,646,921	+				+0.2
1,646,921	+				+0.6
1,646,922	-				-0.4
1,646,922	-				+0.4
1,646,922	-				+0.3
1,646,922	-				+1.8
1,646,922	-				+1.1
1,646,922	-				+0.9
1,646,922	-				+0.2
1,646,923	+				+0.3
1,646,923	+				+1.9
1,646,923	+				-3.6
1,646,923	+				+1.3
1,646,923	+				+0.0
1,646,923	+				-0.4
1,646,923	+				-4.5
1,646,923	+				+1.2
1,646,923	+				+0.2
1,646,924	-				+1.0
1,646,924	-				-0.1
1,646,924	-				+0.7
1,646,924	-				+0.6
1,646,926	-				-0.5
1,646,926	-				+0.4
1,646,927	+				-2.9
1,646,927	+				-2.7
1,646,927	+				+0.6
1,646,927	+				-0.1
1,646,927	+				+0.4
1,646,927	+				+0.4
1,646,927	+				-0.2
1,646,953	+				+0.1
1,646,995	+				+0.0
1,646,995	+				+1.0
1,646,999	-				+0.6
1,647,000	+				+0.9
1,647,006	-				+0.9
1,647,006	-				+1.2
1,647,006	-				+0.1
1,647,029	-				+0.1
1,647,029	-				-1.5
1,647,029	-				-4.3
1,647,030	+				+0.2
1,647,030	+				+1.6
1,647,031	-				-1.6
1,647,033	-				+0.6
1,647,033	-				-1.3
1,647,033	-				+0.2
1,647,033	-				+1.0
1,647,033	-				+0.2
1,647,034	+				+0.0
1,647,034	+				+0.6
1,647,055	-				-1.9
1,647,058	-				-0.5
1,647,059	+				-0.5
1,647,062	+				-1.6
1,647,063	-				+0.9
1,647,063	-				-0.9
1,647,064	+				+0.8
1,647,073	+				+2.4
1,647,094	-				-0.3
1,647,095	+				+0.2
1,647,099	-				+0.1
1,647,108	-				+0.5
1,647,121	-				+0.8
1,647,121	-				+0.5
1,647,121	-				-0.1
1,647,121	-				-0.1
1,647,122	+				-2.7
1,647,122	+				-0.0
1,647,126	-				-0.5
1,647,131	+				+0.0
1,647,137	-				-0.1
1,647,137	-				-0.0
1,647,137	-				-1.0
1,647,140	-				+0.8
1,647,140	-				+0.9
1,647,141	+				-0.0
1,647,141	+				-1.9
1,647,141	+				-0.3
1,647,141	+				+1.4
1,647,141	+				+0.3
1,647,149	-				-0.3
1,647,150	+				+0.3
1,647,150	+				+0.5
1,647,155	-				+0.2
1,647,156	+				-1.1
1,647,156	+				+0.5
1,647,173	-				-0.2
1,647,202	+				+1.0
1,647,218	-				-4.7
1,647,251	-				-2.2
1,647,270	+				+0.3
1,647,270	+				-0.0
1,647,270	+				-2.3
1,647,270	+				-0.8
1,647,341	-		MMJJ_RS08930	0.18	+0.9
1,647,360	-		MMJJ_RS08930	0.21	+0.5
1,647,360	-		MMJJ_RS08930	0.21	+0.1
1,647,401	+		MMJJ_RS08930	0.26	+0.4
1,647,407	-		MMJJ_RS08930	0.27	+0.1
1,647,438	+		MMJJ_RS08930	0.30	+0.4
1,647,444	+		MMJJ_RS08930	0.31	+0.2
1,647,472	-		MMJJ_RS08930	0.35	-0.1
1,647,472	-		MMJJ_RS08930	0.35	+0.6
1,647,476	-		MMJJ_RS08930	0.35	-0.6
1,647,477	+		MMJJ_RS08930	0.35	+0.1
1,647,519	-		MMJJ_RS08930	0.41	+0.4
1,647,723	+		MMJJ_RS08930	0.66	+0.6
1,647,751	+		MMJJ_RS08930	0.70	+0.1
1,647,783	-		MMJJ_RS08930	0.74	+0.4
1,647,787	-		MMJJ_RS08930	0.74	+1.1
1,647,788	+		MMJJ_RS08930	0.74	+1.3
1,647,788	+		MMJJ_RS08930	0.74	+1.1
1,647,884	-		MMJJ_RS08930	0.87	+0.4
1,647,885	+		MMJJ_RS08930	0.87	+0.5
1,647,885	+		MMJJ_RS08930	0.87	-0.3
1,647,886	-		MMJJ_RS08930	0.87	-0.6
1,647,886	-		MMJJ_RS08930	0.87	-1.0
1,647,887	+		MMJJ_RS08930	0.87	-0.1
1,647,927	-				+0.2
1,647,928	+				+0.6
1,647,939	-				+0.1
1,648,014	+				-0.4
1,648,023	+				-1.5
1,648,064	-				+2.3
1,648,367	+		MMJJ_RS08935	0.46	-2.3
1,648,515	-				+1.2
1,648,589	+		MMJJ_RS08935	0.81	+1.2
1,648,672	-				+0.8
1,648,672	-				+0.1
1,648,696	+				+0.1
1,648,733	-				-0.6
1,648,734	+				-0.9
1,648,734	+				+0.4
1,648,738	+				+0.9
1,648,742	-				+0.6
1,648,751	-				-0.0
1,648,752	+				-0.1
1,648,754	+				-0.2
1,648,877	+		MMJJ_RS08940	0.47	-2.0
1,648,924	-		MMJJ_RS08940	0.64	-1.5
1,648,925	+		MMJJ_RS08940	0.65	-0.4