Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08410

Experiment: McCas-formate glass attached

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas-formate glass attached
1,546,925	+		MMJJ_RS08405	0.25	-0.1
1,546,932	+		MMJJ_RS08405	0.26	-0.1
1,546,946	+		MMJJ_RS08405	0.27	-2.2
1,546,964	-		MMJJ_RS08405	0.28	-1.2
1,546,964	-		MMJJ_RS08405	0.28	-3.1
1,546,964	-		MMJJ_RS08405	0.28	-2.5
1,546,965	+		MMJJ_RS08405	0.28	+2.0
1,546,970	+		MMJJ_RS08405	0.29	+1.3
1,547,016	+		MMJJ_RS08405	0.33	-1.1
1,547,033	+		MMJJ_RS08405	0.34	+0.5
1,547,085	-		MMJJ_RS08405	0.39	+1.2
1,547,150	-		MMJJ_RS08405	0.45	-0.8
1,547,150	-		MMJJ_RS08405	0.45	-1.3
1,547,150	-		MMJJ_RS08405	0.45	-1.4
1,547,151	+		MMJJ_RS08405	0.45	+2.3
1,547,151	+		MMJJ_RS08405	0.45	-0.0
1,547,151	+		MMJJ_RS08405	0.45	-3.1
1,547,151	+		MMJJ_RS08405	0.45	+1.2
1,547,151	+		MMJJ_RS08405	0.45	-1.0
1,547,151	+		MMJJ_RS08405	0.45	-0.2
1,547,151	+		MMJJ_RS08405	0.45	-1.6
1,547,152	-		MMJJ_RS08405	0.45	-3.3
1,547,152	-		MMJJ_RS08405	0.45	-2.7
1,547,152	-				+3.2
1,547,152	-		MMJJ_RS08405	0.45	+0.3
1,547,152	-		MMJJ_RS08405	0.45	-1.3
1,547,152	-		MMJJ_RS08405	0.45	+0.7
1,547,153	+		MMJJ_RS08405	0.45	-4.2
1,547,153	+		MMJJ_RS08405	0.45	+0.5
1,547,153	+		MMJJ_RS08405	0.45	+0.8
1,547,153	+		MMJJ_RS08405	0.45	+2.2
1,547,153	+		MMJJ_RS08405	0.45	-1.1
1,547,153	+		MMJJ_RS08405	0.45	-0.4
1,547,173	+		MMJJ_RS08405	0.47	-3.8
1,547,237	+		MMJJ_RS08405	0.53	-0.0
1,547,252	+		MMJJ_RS08405	0.54	-4.1
1,547,258	-		MMJJ_RS08405	0.54	-2.6
1,547,294	-		MMJJ_RS08405	0.58	-3.1
1,547,294	-		MMJJ_RS08405	0.58	-3.2
1,547,306	-		MMJJ_RS08405	0.59	-0.8
1,547,353	+		MMJJ_RS08405	0.63	+0.7
1,547,362	+		MMJJ_RS08405	0.64	+0.6
1,547,424	-		MMJJ_RS08405	0.69	-0.1
1,547,424	-		MMJJ_RS08405	0.69	+0.3
1,547,425	+		MMJJ_RS08405	0.69	-2.3
1,547,453	+		MMJJ_RS08405	0.72	-3.6
1,547,474	+		MMJJ_RS08405	0.74	-3.7
1,547,661	+				+1.6
1,547,665	-				-0.2
1,547,666	+				-2.3
1,547,680	-				-4.6
1,547,681	+				+1.7
1,547,681	+				-0.4
1,547,681	+				+0.7
1,547,695	-				+1.1
1,547,695	-				+0.2
1,547,698	-				+0.9
1,547,723	-				+1.9
1,547,724	+				-1.3
1,547,724	+				+1.6
1,547,724	+				+0.3
1,547,729	-				+1.4
1,547,729	-				-3.1
1,547,730	+				+0.7
1,547,735	-				-2.0
1,547,736	+				-4.2
1,547,736	+				+0.6
1,547,762	-				+0.7
1,547,763	+				-0.2
1,547,763	+				+1.0
1,547,769	-				+0.7
1,547,785	-				+1.3
1,547,785	-				-0.7
1,547,785	-				+0.1
1,547,786	+				-0.3
1,547,786	+				+0.2
1,547,786	+				+1.0
1,547,786	+				+0.3
1,547,786	+				-0.7
1,547,786	+				+0.9
1,547,790	+				-0.5
1,547,790	+				-1.3
1,547,790	+				+0.2
1,547,790	+				+0.6
1,547,790	+				-0.4
1,547,792	+				+0.4
1,547,792	+				-0.6
1,547,792	+				-1.3
1,547,792	+				-1.2
1,547,792	+				-0.5
1,547,792	+				+0.2
1,547,792	+				+0.4
1,547,793	-				-2.3
1,547,793	-				-0.1
1,547,793	-				+0.1
1,547,793	-				-0.5
1,547,793	-				+1.1
1,547,793	-				+0.7
1,547,794	+				-0.6
1,547,794	+				-0.7
1,547,794	+				+0.6
1,547,794	+				+0.6
1,547,794	+				+0.6
1,547,796	-				-1.5
1,547,797	+				+0.3
1,547,831	+				+0.9
1,547,838	-				-0.6
1,547,839	+				-1.2
1,547,839	+				-0.6
1,547,898	-		MMJJ_RS08410	0.18	+1.2
1,547,899	+		MMJJ_RS08410	0.19	-0.8
1,548,008	+		MMJJ_RS08410	0.49	+0.4
1,548,070	+		MMJJ_RS08410	0.66	+1.1
1,548,081	-		MMJJ_RS08410	0.69	+0.3
1,548,096	-		MMJJ_RS08410	0.73	+1.1
1,548,211	-				+0.1
1,548,212	+				+0.8
1,548,243	-				-0.6
1,548,247	-				-3.2
1,548,247	-				-1.4
1,548,247	-				-0.4
1,548,247	-				+1.5
1,548,248	+				+1.1
1,548,273	-				+0.8
1,548,276	+				+0.5
1,548,305	-				+0.2
1,548,326	+				+0.1
1,548,328	+				-1.7
1,548,328	+				-0.1
1,548,340	-				-0.0
1,548,340	-				+0.9
1,548,341	+				-4.2
1,548,455	-		MMJJ_RS08415	0.14	+0.6
1,548,469	-		MMJJ_RS08415	0.16	-0.3
1,548,497	+		MMJJ_RS08415	0.20	-3.6
1,548,517	-		MMJJ_RS08415	0.23	+0.6
1,548,517	-		MMJJ_RS08415	0.23	+0.9
1,548,517	-		MMJJ_RS08415	0.23	-0.0
1,548,517	-		MMJJ_RS08415	0.23	-1.5
1,548,517	-		MMJJ_RS08415	0.23	-0.3
1,548,517	-		MMJJ_RS08415	0.23	+0.1
1,548,518	+		MMJJ_RS08415	0.23	-1.2
1,548,518	+		MMJJ_RS08415	0.23	-2.3
1,548,518	+		MMJJ_RS08415	0.23	-0.1
1,548,518	+		MMJJ_RS08415	0.23	+0.1
1,548,518	+		MMJJ_RS08415	0.23	+0.3
1,548,543	-		MMJJ_RS08415	0.27	-0.3
1,548,559	-		MMJJ_RS08415	0.30	-0.0
1,548,560	+		MMJJ_RS08415	0.30	-0.1
1,548,582	-		MMJJ_RS08415	0.33	-0.3
1,548,682	-		MMJJ_RS08415	0.49	-0.3
1,548,682	-		MMJJ_RS08415	0.49	-0.5
1,548,683	+		MMJJ_RS08415	0.49	-1.2
1,548,683	+		MMJJ_RS08415	0.49	+0.4
1,548,729	-		MMJJ_RS08415	0.56	+0.4
1,548,729	-		MMJJ_RS08415	0.56	+0.5
1,548,730	+		MMJJ_RS08415	0.56	-2.2
1,548,730	+		MMJJ_RS08415	0.56	+0.3
1,548,730	+		MMJJ_RS08415	0.56	-2.8
1,548,787	+		MMJJ_RS08415	0.65	+1.1
1,548,887	-		MMJJ_RS08415	0.81	+0.1
1,548,913	-		MMJJ_RS08415	0.85	+0.6
1,548,935	+		MMJJ_RS08415	0.88	-0.1
1,548,949	-				+0.2
1,548,951	-				+0.7
1,548,951	-				-2.2
1,548,951	-				+0.6
1,548,952	+				-0.7
1,548,953	-				+0.0
1,548,953	-				-0.0
1,548,954	+				-0.1
1,548,954	+				-1.9
1,548,956	+				+0.7
1,548,956	+				-2.1
1,548,956	+				+2.2
1,549,029	-				+0.3
1,549,031	-				+2.0
1,549,041	-				-1.2
1,549,080	+				+0.8
1,549,103	-				+0.2
1,549,104	+				+0.7
1,549,104	+				+0.6
1,549,104	+				+1.1
1,549,104	+				+0.3
1,549,107	-				-0.1
1,549,127	-		MMJJ_RS08420	0.11	+0.7
1,549,127	-		MMJJ_RS08420	0.11	-0.8
1,549,128	+		MMJJ_RS08420	0.11	+0.3
1,549,135	+		MMJJ_RS08420	0.12	-2.1
1,549,158	+		MMJJ_RS08420	0.14	+0.7