Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08400

Experiment: McCas-formate glass attached

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas-formate glass attached
1,544,916	-				+0.3
1,544,921	-				+0.2
1,544,921	-				-1.5
1,544,922	+				+0.2
1,544,922	+				+0.0
1,544,922	+				+0.1
1,544,928	-				+0.7
1,544,932	-				+0.4
1,544,932	-				+0.3
1,545,003	-				+0.8
1,545,032	-		MMJJ_RS08395	0.12	+0.1
1,545,121	-		MMJJ_RS08395	0.22	+0.2
1,545,212	+		MMJJ_RS08395	0.32	+0.4
1,545,237	-		MMJJ_RS08395	0.35	+0.4
1,545,238	+		MMJJ_RS08395	0.35	-0.0
1,545,249	-		MMJJ_RS08395	0.36	+1.2
1,545,250	+		MMJJ_RS08395	0.36	+1.7
1,545,251	-		MMJJ_RS08395	0.37	-0.3
1,545,251	-		MMJJ_RS08395	0.37	-0.3
1,545,251	-		MMJJ_RS08395	0.37	+0.6
1,545,251	-		MMJJ_RS08395	0.37	-0.0
1,545,251	-		MMJJ_RS08395	0.37	+2.0
1,545,251	-		MMJJ_RS08395	0.37	-0.0
1,545,252	+		MMJJ_RS08395	0.37	-0.8
1,545,252	+		MMJJ_RS08395	0.37	-2.8
1,545,252	+		MMJJ_RS08395	0.37	-0.2
1,545,252	+		MMJJ_RS08395	0.37	+0.5
1,545,254	-		MMJJ_RS08395	0.37	-2.8
1,545,254	-		MMJJ_RS08395	0.37	-0.0
1,545,254	-		MMJJ_RS08395	0.37	+0.3
1,545,254	-		MMJJ_RS08395	0.37	-0.0
1,545,254	-		MMJJ_RS08395	0.37	-1.8
1,545,255	+		MMJJ_RS08395	0.37	-0.5
1,545,255	+		MMJJ_RS08395	0.37	+0.4
1,545,257	+		MMJJ_RS08395	0.37	+1.2
1,545,321	-		MMJJ_RS08395	0.44	+0.5
1,545,322	+		MMJJ_RS08395	0.44	-2.0
1,545,329	+		MMJJ_RS08395	0.45	-1.0
1,545,337	+		MMJJ_RS08395	0.46	+0.8
1,545,337	+		MMJJ_RS08395	0.46	+0.2
1,545,343	-		MMJJ_RS08395	0.47	+0.9
1,545,343	-		MMJJ_RS08395	0.47	-0.6
1,545,344	+		MMJJ_RS08395	0.47	-0.1
1,545,344	+		MMJJ_RS08395	0.47	+0.8
1,545,347	-		MMJJ_RS08395	0.47	+0.7
1,545,359	-		MMJJ_RS08395	0.48	-1.8
1,545,431	-		MMJJ_RS08395	0.56	-0.0
1,545,432	+		MMJJ_RS08395	0.57	-0.0
1,545,436	-		MMJJ_RS08395	0.57	+0.5
1,545,436	-		MMJJ_RS08395	0.57	+0.1
1,545,436	-		MMJJ_RS08395	0.57	-1.9
1,545,472	+		MMJJ_RS08395	0.61	-0.0
1,545,473	-		MMJJ_RS08395	0.61	-2.4
1,545,473	-		MMJJ_RS08395	0.61	+0.5
1,545,473	-		MMJJ_RS08395	0.61	-1.1
1,545,473	-		MMJJ_RS08395	0.61	+1.9
1,545,505	-		MMJJ_RS08395	0.65	-0.2
1,545,505	-		MMJJ_RS08395	0.65	+0.3
1,545,505	-		MMJJ_RS08395	0.65	-0.2
1,545,510	-		MMJJ_RS08395	0.65	-3.5
1,545,510	-		MMJJ_RS08395	0.65	-1.5
1,545,510	-		MMJJ_RS08395	0.65	+0.4
1,545,511	+		MMJJ_RS08395	0.65	+0.2
1,545,567	+		MMJJ_RS08395	0.71	+0.1
1,545,576	-		MMJJ_RS08395	0.72	+0.4
1,545,577	+		MMJJ_RS08395	0.73	+0.0
1,545,580	-		MMJJ_RS08395	0.73	-0.2
1,545,580	-		MMJJ_RS08395	0.73	+0.6
1,545,617	+		MMJJ_RS08395	0.77	-0.9
1,545,617	+		MMJJ_RS08395	0.77	-0.2
1,545,621	-		MMJJ_RS08395	0.77	+1.0
1,545,640	+		MMJJ_RS08395	0.79	-0.3
1,545,640	+		MMJJ_RS08395	0.79	-0.1
1,545,640	+		MMJJ_RS08395	0.79	-1.7
1,545,743	-				+0.2
1,545,772	+				+0.1
1,545,804	+				+0.8
1,545,828	-				-3.4
1,545,839	-				+0.0
1,545,862	-				+1.4
1,545,879	-				+0.7
1,545,915	-		MMJJ_RS08400	0.13	+0.1
1,546,054	-		MMJJ_RS08400	0.37	+0.5
1,546,055	+		MMJJ_RS08400	0.37	-0.4
1,546,091	-		MMJJ_RS08400	0.44	-0.0
1,546,132	+		MMJJ_RS08400	0.51	+0.9
1,546,392	-				+0.1
1,546,393	+				+0.3
1,546,402	+				-0.2
1,546,437	-				-0.6
1,546,437	-				+0.0
1,546,438	+				-0.2
1,546,438	+				+0.5
1,546,443	+				+0.1
1,546,464	-				+1.7
1,546,464	-				-0.7
1,546,465	+				+0.1
1,546,466	-				+0.2
1,546,466	-				-0.2
1,546,466	-				+0.2
1,546,466	-				+0.3
1,546,466	-				-1.0
1,546,466	-				+0.4
1,546,466	-				-0.4
1,546,466	-				+0.4
1,546,466	-				-2.9
1,546,466	-				-0.4
1,546,466	-				+0.4
1,546,467	+				-0.1
1,546,467	+				-0.6
1,546,467	+				-0.3
1,546,467	+				+0.1
1,546,467	+				-0.7
1,546,467	+				+1.4
1,546,467	+				-0.3
1,546,467	+				+0.7
1,546,467	+				-0.7
1,546,467	+				-0.1
1,546,468	-				-1.3
1,546,468	-				+0.0
1,546,468	-				+0.3
1,546,468	-				-0.1
1,546,468	-				+0.1
1,546,468	-				-0.2
1,546,469	+				+0.4
1,546,469	+				+0.9
1,546,469	+				-0.2
1,546,469	+				+0.0
1,546,469	+				-1.1
1,546,469	+				-1.0
1,546,469	+				+0.3
1,546,469	+				+1.7
1,546,469	+				-0.8
1,546,469	+				+0.7
1,546,485	-				+0.7
1,546,487	-				-2.4
1,546,488	+				-4.1
1,546,489	-				+0.5
1,546,489	-				-1.0
1,546,490	+				+0.1
1,546,490	+				-0.0
1,546,490	+				+1.8
1,546,490	+				+0.2
1,546,492	-				+0.4
1,546,493	+				+0.7
1,546,495	+				+0.6
1,546,495	+				-2.0
1,546,495	+				-4.2
1,546,502	-				+1.4
1,546,520	-				-0.0
1,546,520	-				-0.4
1,546,520	-				-0.5
1,546,521	+				-3.2
1,546,521	+				-0.1
1,546,528	+				-0.1
1,546,530	-				-3.2
1,546,531	+				-0.1
1,546,533	-				-3.7
1,546,533	-				-1.5
1,546,533	-				-1.6
1,546,533	-				-1.6
1,546,534	+				-3.1
1,546,535	-				+1.1
1,546,535	-				+0.1
1,546,535	-				-2.2
1,546,535	-				+0.6
1,546,535	-				+0.0
1,546,535	-				+1.5
1,546,535	-				-0.6
1,546,535	-				-2.5
1,546,536	+				+2.0
1,546,536	+				+1.2
1,546,536	+				-3.4
1,546,536	+				-0.4
1,546,536	+				+0.0
1,546,536	+				-2.7
1,546,536	+				+1.1
1,546,536	+				-0.8
1,546,536	+				+0.3
1,546,539	-				-3.3
1,546,539	-				-0.0
1,546,539	-				+0.7
1,546,539	-				-0.7
1,546,539	-				+0.3
1,546,539	-				-1.1
1,546,539	-				+0.5
1,546,539	-				+1.2
1,546,539	-				-1.1
1,546,549	-				-1.1
1,546,549	-				+2.2
1,546,549	-				-4.7
1,546,549	-				+1.6
1,546,550	+				+0.5
1,546,550	+				-0.1
1,546,550	+				+0.3
1,546,550	+				-0.6
1,546,556	-				-0.6
1,546,556	-				+1.3
1,546,566	+				-2.9
1,546,616	-				-0.4
1,546,617	+				-2.3
1,546,617	+				-1.7
1,546,647	-				-0.7
1,546,683	+				-3.3
1,546,716	+				+1.5
1,546,729	-				+0.8
1,546,730	+				+1.2
1,546,732	-				-4.3
1,546,732	-				-1.4
1,546,733	+				+0.8
1,546,748	-				+1.3
1,546,760	+		MMJJ_RS08405	0.10	-0.0
1,546,814	-		MMJJ_RS08405	0.15	-2.4
1,546,814	-		MMJJ_RS08405	0.15	+0.5
1,546,820	+		MMJJ_RS08405	0.16	-2.4
1,546,925	+		MMJJ_RS08405	0.25	-0.1
1,546,932	+		MMJJ_RS08405	0.26	-0.1
1,546,946	+		MMJJ_RS08405	0.27	-2.2
1,546,964	-		MMJJ_RS08405	0.28	-1.2
1,546,964	-		MMJJ_RS08405	0.28	-3.1
1,546,964	-		MMJJ_RS08405	0.28	-2.5
1,546,965	+		MMJJ_RS08405	0.28	+2.0
1,546,970	+		MMJJ_RS08405	0.29	+1.3
1,547,016	+		MMJJ_RS08405	0.33	-1.1
1,547,033	+		MMJJ_RS08405	0.34	+0.5
1,547,085	-		MMJJ_RS08405	0.39	+1.2
1,547,150	-		MMJJ_RS08405	0.45	-0.8
1,547,150	-		MMJJ_RS08405	0.45	-1.3
1,547,150	-		MMJJ_RS08405	0.45	-1.4
1,547,151	+		MMJJ_RS08405	0.45	+2.3
1,547,151	+		MMJJ_RS08405	0.45	-0.0
1,547,151	+		MMJJ_RS08405	0.45	-3.1
1,547,151	+		MMJJ_RS08405	0.45	+1.2
1,547,151	+		MMJJ_RS08405	0.45	-1.0
1,547,151	+		MMJJ_RS08405	0.45	-0.2
1,547,151	+		MMJJ_RS08405	0.45	-1.6
1,547,152	-		MMJJ_RS08405	0.45	-3.3
1,547,152	-		MMJJ_RS08405	0.45	-2.7
1,547,152	-				+3.2
1,547,152	-		MMJJ_RS08405	0.45	+0.3
1,547,152	-		MMJJ_RS08405	0.45	-1.3
1,547,152	-		MMJJ_RS08405	0.45	+0.7
1,547,153	+		MMJJ_RS08405	0.45	-4.2
1,547,153	+		MMJJ_RS08405	0.45	+0.5
1,547,153	+		MMJJ_RS08405	0.45	+0.8
1,547,153	+		MMJJ_RS08405	0.45	+2.2
1,547,153	+		MMJJ_RS08405	0.45	-1.1
1,547,153	+		MMJJ_RS08405	0.45	-0.4
1,547,173	+		MMJJ_RS08405	0.47	-3.8
1,547,237	+		MMJJ_RS08405	0.53	-0.0
1,547,252	+		MMJJ_RS08405	0.54	-4.1
1,547,258	-		MMJJ_RS08405	0.54	-2.6
1,547,294	-		MMJJ_RS08405	0.58	-3.1
1,547,294	-		MMJJ_RS08405	0.58	-3.2
1,547,306	-		MMJJ_RS08405	0.59	-0.8
1,547,353	+		MMJJ_RS08405	0.63	+0.7
1,547,362	+		MMJJ_RS08405	0.64	+0.6