Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08385

Experiment: McCas-formate glass attached

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas-formate glass attached
1,543,241	-		MMJJ_RS08370	0.38	+0.1
1,543,241	-		MMJJ_RS08370	0.38	+0.1
1,543,252	+		MMJJ_RS08370	0.43	+0.0
1,543,252	+		MMJJ_RS08370	0.43	+0.4
1,543,323	-		MMJJ_RS08370	0.81	+0.5
1,543,323	-		MMJJ_RS08370	0.81	+0.2
1,543,324	+		MMJJ_RS08370	0.81	+0.3
1,543,324	+		MMJJ_RS08370	0.81	+0.8
1,543,324	+		MMJJ_RS08370	0.81	-1.4
1,543,327	-		MMJJ_RS08370	0.83	-0.2
1,543,353	-				-0.7
1,543,353	-				+0.3
1,543,358	-				+0.1
1,543,358	-				+0.3
1,543,359	+				+0.6
1,543,359	+				+0.6
1,543,359	+				+1.2
1,543,378	-				-0.7
1,543,379	+				-3.2
1,543,385	-				+0.4
1,543,447	-		MMJJ_RS08375	0.14	+0.1
1,543,448	+		MMJJ_RS08375	0.14	-0.0
1,543,452	-		MMJJ_RS08375	0.15	-0.2
1,543,452	-		MMJJ_RS08375	0.15	-0.3
1,543,453	+		MMJJ_RS08375	0.15	+0.3
1,543,453	+		MMJJ_RS08375	0.15	-0.2
1,543,453	+		MMJJ_RS08375	0.15	-0.1
1,543,453	+		MMJJ_RS08375	0.15	-0.2
1,543,453	+		MMJJ_RS08375	0.15	+0.8
1,543,467	-		MMJJ_RS08375	0.17	+0.0
1,543,524	-		MMJJ_RS08375	0.28	-1.0
1,543,556	+		MMJJ_RS08375	0.35	-3.8
1,543,564	+		MMJJ_RS08375	0.36	-0.4
1,543,609	-		MMJJ_RS08375	0.45	+1.2
1,543,610	+		MMJJ_RS08375	0.45	-0.0
1,543,610	+		MMJJ_RS08375	0.45	+0.9
1,543,623	+		MMJJ_RS08375	0.48	+0.1
1,543,644	-		MMJJ_RS08375	0.52	+0.2
1,543,644	-		MMJJ_RS08375	0.52	+1.4
1,543,644	-		MMJJ_RS08375	0.52	+0.7
1,543,645	+		MMJJ_RS08375	0.52	-1.5
1,543,645	+		MMJJ_RS08375	0.52	+1.4
1,543,646	-		MMJJ_RS08375	0.52	+0.6
1,543,647	+		MMJJ_RS08375	0.52	+0.3
1,543,650	+		MMJJ_RS08375	0.53	-0.1
1,543,713	-		MMJJ_RS08375	0.65	+0.7
1,543,713	-		MMJJ_RS08375	0.65	+0.7
1,543,713	-		MMJJ_RS08375	0.65	+0.4
1,543,714	+		MMJJ_RS08375	0.65	+0.7
1,543,714	+		MMJJ_RS08375	0.65	+0.8
1,543,714	+		MMJJ_RS08375	0.65	-2.8
1,543,717	-		MMJJ_RS08375	0.66	+2.1
1,543,717	-		MMJJ_RS08375	0.66	+0.0
1,543,718	+		MMJJ_RS08375	0.66	+2.8
1,543,807	-		MMJJ_RS08375	0.83	+1.5
1,543,808	+		MMJJ_RS08375	0.84	+0.6
1,543,827	-		MMJJ_RS08375	0.87	-3.8
1,543,827	-		MMJJ_RS08375	0.87	-0.4
1,543,827	-		MMJJ_RS08375	0.87	+0.5
1,543,827	-		MMJJ_RS08375	0.87	-0.7
1,543,827	-		MMJJ_RS08375	0.87	-0.4
1,543,827	-		MMJJ_RS08375	0.87	+1.1
1,543,827	-		MMJJ_RS08375	0.87	-0.7
1,543,828	+		MMJJ_RS08375	0.87	-4.6
1,543,828	+		MMJJ_RS08375	0.87	+0.6
1,543,828	+		MMJJ_RS08375	0.87	-0.1
1,543,831	-		MMJJ_RS08375	0.88	-0.1
1,543,831	-		MMJJ_RS08375	0.88	-0.4
1,543,831	-		MMJJ_RS08375	0.88	+0.3
1,543,831	-		MMJJ_RS08375	0.88	+0.2
1,543,832	+		MMJJ_RS08375	0.88	-1.5
1,543,840	-		MMJJ_RS08375	0.90	-0.0
1,543,841	+				+1.3
1,543,866	-				+0.7
1,543,867	+				-0.0
1,543,878	-				+1.2
1,543,879	+				+0.1
1,543,879	+				+0.2
1,543,879	+				-0.0
1,543,879	+				+0.4
1,543,883	-				+1.3
1,543,892	-				-0.4
1,543,909	-				+1.8
1,543,909	-				-0.2
1,543,910	+				-0.0
1,543,920	-				-0.2
1,543,921	+				-0.5
1,543,921	+				+1.6
1,543,936	+				+0.9
1,543,990	-		MMJJ_RS08380	0.28	+0.1
1,544,018	+				-1.0
1,544,018	+		MMJJ_RS08380	0.39	+0.0
1,544,018	+		MMJJ_RS08380	0.39	+0.8
1,544,090	+		MMJJ_RS08380	0.66	-1.7
1,544,313	+		MMJJ_RS08385	0.31	-0.2
1,544,317	+		MMJJ_RS08385	0.32	+1.6
1,544,320	+		MMJJ_RS08385	0.33	+0.2
1,544,347	+		MMJJ_RS08385	0.41	+0.1
1,544,358	-		MMJJ_RS08385	0.44	+0.4
1,544,376	-		MMJJ_RS08385	0.49	+0.8
1,544,377	+		MMJJ_RS08385	0.49	+0.2
1,544,382	-		MMJJ_RS08385	0.50	-1.2
1,544,382	-		MMJJ_RS08385	0.50	-0.1
1,544,382	-		MMJJ_RS08385	0.50	+0.7
1,544,383	+		MMJJ_RS08385	0.51	+0.2
1,544,391	+		MMJJ_RS08385	0.53	-0.1
1,544,428	+		MMJJ_RS08385	0.63	+0.7
1,544,448	-		MMJJ_RS08385	0.69	+0.4
1,544,449	+		MMJJ_RS08385	0.69	-0.4
1,544,491	+		MMJJ_RS08385	0.81	+1.1
1,544,547	-				-1.1
1,544,559	-				+0.8
1,544,559	-				-0.3
1,544,560	+				+0.2
1,544,560	+				-0.2
1,544,587	-				-0.1
1,544,587	-				+0.1
1,544,588	+				-0.3
1,544,604	-		MMJJ_RS08390	0.10	-0.3
1,544,627	+		MMJJ_RS08390	0.17	+2.6
1,544,629	-		MMJJ_RS08390	0.18	+0.2
1,544,633	+		MMJJ_RS08390	0.19	+0.3
1,544,790	+		MMJJ_RS08390	0.69	-1.2
1,544,823	+		MMJJ_RS08390	0.80	+0.5
1,544,916	-				+0.3
1,544,921	-				+0.2
1,544,921	-				-1.5
1,544,922	+				+0.2
1,544,922	+				+0.0
1,544,922	+				+0.1
1,544,928	-				+0.7
1,544,932	-				+0.4
1,544,932	-				+0.3
1,545,003	-				+0.8
1,545,032	-		MMJJ_RS08395	0.12	+0.1
1,545,121	-		MMJJ_RS08395	0.22	+0.2
1,545,212	+		MMJJ_RS08395	0.32	+0.4
1,545,237	-		MMJJ_RS08395	0.35	+0.4
1,545,238	+		MMJJ_RS08395	0.35	-0.0
1,545,249	-		MMJJ_RS08395	0.36	+1.2
1,545,250	+		MMJJ_RS08395	0.36	+1.7
1,545,251	-		MMJJ_RS08395	0.37	-0.3
1,545,251	-		MMJJ_RS08395	0.37	-0.3
1,545,251	-		MMJJ_RS08395	0.37	+0.6
1,545,251	-		MMJJ_RS08395	0.37	-0.0
1,545,251	-		MMJJ_RS08395	0.37	+2.0
1,545,251	-		MMJJ_RS08395	0.37	-0.0
1,545,252	+		MMJJ_RS08395	0.37	-0.8
1,545,252	+		MMJJ_RS08395	0.37	-2.8
1,545,252	+		MMJJ_RS08395	0.37	-0.2
1,545,252	+		MMJJ_RS08395	0.37	+0.5
1,545,254	-		MMJJ_RS08395	0.37	-2.8
1,545,254	-		MMJJ_RS08395	0.37	-0.0
1,545,254	-		MMJJ_RS08395	0.37	+0.3
1,545,254	-		MMJJ_RS08395	0.37	-0.0
1,545,254	-		MMJJ_RS08395	0.37	-1.8
1,545,255	+		MMJJ_RS08395	0.37	-0.5
1,545,255	+		MMJJ_RS08395	0.37	+0.4
1,545,257	+		MMJJ_RS08395	0.37	+1.2
1,545,321	-		MMJJ_RS08395	0.44	+0.5
1,545,322	+		MMJJ_RS08395	0.44	-2.0
1,545,329	+		MMJJ_RS08395	0.45	-1.0
1,545,337	+		MMJJ_RS08395	0.46	+0.8
1,545,337	+		MMJJ_RS08395	0.46	+0.2
1,545,343	-		MMJJ_RS08395	0.47	+0.9
1,545,343	-		MMJJ_RS08395	0.47	-0.6
1,545,344	+		MMJJ_RS08395	0.47	-0.1
1,545,344	+		MMJJ_RS08395	0.47	+0.8
1,545,347	-		MMJJ_RS08395	0.47	+0.7
1,545,359	-		MMJJ_RS08395	0.48	-1.8
1,545,431	-		MMJJ_RS08395	0.56	-0.0
1,545,432	+		MMJJ_RS08395	0.57	-0.0
1,545,436	-		MMJJ_RS08395	0.57	+0.5
1,545,436	-		MMJJ_RS08395	0.57	+0.1
1,545,436	-		MMJJ_RS08395	0.57	-1.9
1,545,472	+		MMJJ_RS08395	0.61	-0.0
1,545,473	-		MMJJ_RS08395	0.61	-2.4
1,545,473	-		MMJJ_RS08395	0.61	+0.5
1,545,473	-		MMJJ_RS08395	0.61	-1.1
1,545,473	-		MMJJ_RS08395	0.61	+1.9
1,545,505	-		MMJJ_RS08395	0.65	-0.2
1,545,505	-		MMJJ_RS08395	0.65	+0.3
1,545,505	-		MMJJ_RS08395	0.65	-0.2
1,545,510	-		MMJJ_RS08395	0.65	-3.5
1,545,510	-		MMJJ_RS08395	0.65	-1.5
1,545,510	-		MMJJ_RS08395	0.65	+0.4
1,545,511	+		MMJJ_RS08395	0.65	+0.2