Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08375

Experiment: McCas-formate glass attached

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas-formate glass attached
1,542,390	-		MMJJ_RS08360	0.69	-4.1
1,542,391	+		MMJJ_RS08360	0.69	-1.3
1,542,392	-		MMJJ_RS08360	0.70	+0.3
1,542,392	-		MMJJ_RS08360	0.70	+0.6
1,542,392	-		MMJJ_RS08360	0.70	-1.1
1,542,393	+		MMJJ_RS08360	0.70	+0.2
1,542,394	-		MMJJ_RS08360	0.70	-0.2
1,542,394	-		MMJJ_RS08360	0.70	+1.0
1,542,420	-		MMJJ_RS08360	0.72	+0.8
1,542,421	+		MMJJ_RS08360	0.72	+0.8
1,542,421	+		MMJJ_RS08360	0.72	+0.5
1,542,522	-		MMJJ_RS08360	0.81	+0.4
1,542,532	-		MMJJ_RS08360	0.82	+0.9
1,542,533	+		MMJJ_RS08360	0.82	+1.1
1,542,533	+		MMJJ_RS08360	0.82	+0.0
1,542,533	+		MMJJ_RS08360	0.82	+0.8
1,542,605	-		MMJJ_RS08360	0.88	-1.1
1,542,606	+		MMJJ_RS08360	0.88	-2.0
1,542,606	+		MMJJ_RS08360	0.88	+0.9
1,542,610	+		MMJJ_RS08360	0.88	+0.5
1,542,612	-		MMJJ_RS08360	0.88	-0.1
1,542,612	-		MMJJ_RS08360	0.88	+0.3
1,542,612	-		MMJJ_RS08360	0.88	+0.9
1,542,635	-				+0.6
1,542,636	+				+1.1
1,542,640	-				-0.1
1,542,674	+				+1.2
1,542,718	-				-4.1
1,542,733	+				-0.6
1,542,737	-				+0.0
1,542,751	-				-0.4
1,542,758	+				+0.2
1,542,780	-				-0.2
1,542,781	+				+0.2
1,542,781	+				-1.7
1,542,781	+				+0.4
1,542,785	-				+0.7
1,542,877	+		MMJJ_RS08365	0.26	+0.5
1,542,877	+		MMJJ_RS08365	0.26	-1.8
1,542,877	+		MMJJ_RS08365	0.26	-1.4
1,542,879	-		MMJJ_RS08365	0.27	-0.0
1,542,879	-		MMJJ_RS08365	0.27	-1.4
1,542,879	-		MMJJ_RS08365	0.27	-2.0
1,542,880	+		MMJJ_RS08365	0.27	+0.3
1,542,880	+		MMJJ_RS08365	0.27	-0.0
1,542,884	+		MMJJ_RS08365	0.28	+0.6
1,542,897	-				-0.8
1,542,900	-		MMJJ_RS08365	0.33	+0.7
1,543,022	+		MMJJ_RS08365	0.68	-3.2
1,543,073	+		MMJJ_RS08365	0.82	+0.9
1,543,085	-		MMJJ_RS08365	0.86	-0.5
1,543,102	+				-4.4
1,543,107	+				-1.7
1,543,110	-				+0.3
1,543,110	-				+3.3
1,543,110	-				+0.2
1,543,111	+				-1.9
1,543,111	+				-1.3
1,543,111	+				-0.1
1,543,159	-				-2.0
1,543,160	+				-1.2
1,543,171	-				+0.4
1,543,171	-				+0.3
1,543,173	-				-1.6
1,543,241	-		MMJJ_RS08370	0.38	+0.1
1,543,241	-		MMJJ_RS08370	0.38	+0.1
1,543,252	+		MMJJ_RS08370	0.43	+0.0
1,543,252	+		MMJJ_RS08370	0.43	+0.4
1,543,323	-		MMJJ_RS08370	0.81	+0.5
1,543,323	-		MMJJ_RS08370	0.81	+0.2
1,543,324	+		MMJJ_RS08370	0.81	+0.3
1,543,324	+		MMJJ_RS08370	0.81	+0.8
1,543,324	+		MMJJ_RS08370	0.81	-1.4
1,543,327	-		MMJJ_RS08370	0.83	-0.2
1,543,353	-				-0.7
1,543,353	-				+0.3
1,543,358	-				+0.1
1,543,358	-				+0.3
1,543,359	+				+0.6
1,543,359	+				+0.6
1,543,359	+				+1.2
1,543,378	-				-0.7
1,543,379	+				-3.2
1,543,385	-				+0.4
1,543,447	-		MMJJ_RS08375	0.14	+0.1
1,543,448	+		MMJJ_RS08375	0.14	-0.0
1,543,452	-		MMJJ_RS08375	0.15	-0.2
1,543,452	-		MMJJ_RS08375	0.15	-0.3
1,543,453	+		MMJJ_RS08375	0.15	+0.3
1,543,453	+		MMJJ_RS08375	0.15	-0.2
1,543,453	+		MMJJ_RS08375	0.15	-0.1
1,543,453	+		MMJJ_RS08375	0.15	-0.2
1,543,453	+		MMJJ_RS08375	0.15	+0.8
1,543,467	-		MMJJ_RS08375	0.17	+0.0
1,543,524	-		MMJJ_RS08375	0.28	-1.0
1,543,556	+		MMJJ_RS08375	0.35	-3.8
1,543,564	+		MMJJ_RS08375	0.36	-0.4
1,543,609	-		MMJJ_RS08375	0.45	+1.2
1,543,610	+		MMJJ_RS08375	0.45	-0.0
1,543,610	+		MMJJ_RS08375	0.45	+0.9
1,543,623	+		MMJJ_RS08375	0.48	+0.1
1,543,644	-		MMJJ_RS08375	0.52	+0.2
1,543,644	-		MMJJ_RS08375	0.52	+1.4
1,543,644	-		MMJJ_RS08375	0.52	+0.7
1,543,645	+		MMJJ_RS08375	0.52	-1.5
1,543,645	+		MMJJ_RS08375	0.52	+1.4
1,543,646	-		MMJJ_RS08375	0.52	+0.6
1,543,647	+		MMJJ_RS08375	0.52	+0.3
1,543,650	+		MMJJ_RS08375	0.53	-0.1
1,543,713	-		MMJJ_RS08375	0.65	+0.7
1,543,713	-		MMJJ_RS08375	0.65	+0.7
1,543,713	-		MMJJ_RS08375	0.65	+0.4
1,543,714	+		MMJJ_RS08375	0.65	+0.7
1,543,714	+		MMJJ_RS08375	0.65	+0.8
1,543,714	+		MMJJ_RS08375	0.65	-2.8
1,543,717	-		MMJJ_RS08375	0.66	+2.1
1,543,717	-		MMJJ_RS08375	0.66	+0.0
1,543,718	+		MMJJ_RS08375	0.66	+2.8
1,543,807	-		MMJJ_RS08375	0.83	+1.5
1,543,808	+		MMJJ_RS08375	0.84	+0.6
1,543,827	-		MMJJ_RS08375	0.87	-3.8
1,543,827	-		MMJJ_RS08375	0.87	-0.4
1,543,827	-		MMJJ_RS08375	0.87	+0.5
1,543,827	-		MMJJ_RS08375	0.87	-0.7
1,543,827	-		MMJJ_RS08375	0.87	-0.4
1,543,827	-		MMJJ_RS08375	0.87	+1.1
1,543,827	-		MMJJ_RS08375	0.87	-0.7
1,543,828	+		MMJJ_RS08375	0.87	-4.6
1,543,828	+		MMJJ_RS08375	0.87	+0.6
1,543,828	+		MMJJ_RS08375	0.87	-0.1
1,543,831	-		MMJJ_RS08375	0.88	-0.1
1,543,831	-		MMJJ_RS08375	0.88	-0.4
1,543,831	-		MMJJ_RS08375	0.88	+0.3
1,543,831	-		MMJJ_RS08375	0.88	+0.2
1,543,832	+		MMJJ_RS08375	0.88	-1.5
1,543,840	-		MMJJ_RS08375	0.90	-0.0
1,543,841	+				+1.3
1,543,866	-				+0.7
1,543,867	+				-0.0
1,543,878	-				+1.2
1,543,879	+				+0.1
1,543,879	+				+0.2
1,543,879	+				-0.0
1,543,879	+				+0.4
1,543,883	-				+1.3
1,543,892	-				-0.4
1,543,909	-				+1.8
1,543,909	-				-0.2
1,543,910	+				-0.0
1,543,920	-				-0.2
1,543,921	+				-0.5
1,543,921	+				+1.6
1,543,936	+				+0.9
1,543,990	-		MMJJ_RS08380	0.28	+0.1
1,544,018	+				-1.0
1,544,018	+		MMJJ_RS08380	0.39	+0.0
1,544,018	+		MMJJ_RS08380	0.39	+0.8
1,544,090	+		MMJJ_RS08380	0.66	-1.7
1,544,313	+		MMJJ_RS08385	0.31	-0.2
1,544,317	+		MMJJ_RS08385	0.32	+1.6
1,544,320	+		MMJJ_RS08385	0.33	+0.2
1,544,347	+		MMJJ_RS08385	0.41	+0.1
1,544,358	-		MMJJ_RS08385	0.44	+0.4
1,544,376	-		MMJJ_RS08385	0.49	+0.8
1,544,377	+		MMJJ_RS08385	0.49	+0.2
1,544,382	-		MMJJ_RS08385	0.50	-1.2
1,544,382	-		MMJJ_RS08385	0.50	-0.1
1,544,382	-		MMJJ_RS08385	0.50	+0.7
1,544,383	+		MMJJ_RS08385	0.51	+0.2
1,544,391	+		MMJJ_RS08385	0.53	-0.1
1,544,428	+		MMJJ_RS08385	0.63	+0.7
1,544,448	-		MMJJ_RS08385	0.69	+0.4
1,544,449	+		MMJJ_RS08385	0.69	-0.4
1,544,491	+		MMJJ_RS08385	0.81	+1.1
1,544,547	-				-1.1
1,544,559	-				+0.8
1,544,559	-				-0.3
1,544,560	+				+0.2
1,544,560	+				-0.2
1,544,587	-				-0.1
1,544,587	-				+0.1
1,544,588	+				-0.3
1,544,604	-		MMJJ_RS08390	0.10	-0.3
1,544,627	+		MMJJ_RS08390	0.17	+2.6
1,544,629	-		MMJJ_RS08390	0.18	+0.2
1,544,633	+		MMJJ_RS08390	0.19	+0.3
1,544,790	+		MMJJ_RS08390	0.69	-1.2
1,544,823	+		MMJJ_RS08390	0.80	+0.5