Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08260

Experiment: McCas-formate glass attached

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas-formate glass attached
1,519,618	+		MMJJ_RS08250	0.41	-0.6
1,519,627	+		MMJJ_RS08250	0.42	+0.6
1,519,670	-		MMJJ_RS08250	0.50	-2.8
1,519,671	+		MMJJ_RS08250	0.51	-0.1
1,519,671	+		MMJJ_RS08250	0.51	-4.5
1,519,671	+		MMJJ_RS08250	0.51	-0.5
1,519,671	+		MMJJ_RS08250	0.51	-0.2
1,519,699	+		MMJJ_RS08250	0.56	-1.4
1,519,723	+		MMJJ_RS08250	0.60	-2.1
1,519,743	-		MMJJ_RS08250	0.64	-1.6
1,519,752	+		MMJJ_RS08250	0.66	-2.5
1,519,815	-		MMJJ_RS08250	0.77	-1.8
1,519,832	+		MMJJ_RS08250	0.80	-3.3
1,519,857	-		MMJJ_RS08250	0.85	-2.5
1,519,862	+		MMJJ_RS08250	0.86	-3.8
1,519,902	+				-0.8
1,519,905	+				-0.2
1,519,914	+				-0.4
1,519,917	+				-3.0
1,519,919	-				-1.3
1,519,920	+				-2.6
1,519,976	-				+1.4
1,519,976	-				+0.7
1,519,976	-				+0.4
1,519,976	-				+1.4
1,519,976	-				+1.0
1,519,977	+				-3.4
1,519,977	+				-1.9
1,519,978	-				-4.6
1,519,978	-				+0.5
1,519,978	-				+0.9
1,519,979	+				-0.1
1,519,979	+				+0.6
1,519,979	+				+0.9
1,519,979	+				-2.6
1,519,980	-				-2.0
1,519,980	-				+0.2
1,519,980	-				+1.2
1,519,980	-				+0.1
1,519,980	-				-0.8
1,519,980	-				-1.2
1,519,980	-				-0.6
1,519,980	-				+2.1
1,519,981	+				+1.0
1,519,981	+				+0.7
1,519,981	+				-3.4
1,519,981	+				-2.0
1,519,982	-				+0.1
1,519,982	-				+0.0
1,519,982	-				+0.1
1,519,982	-				+0.5
1,519,983	+				-1.1
1,519,983	+				-5.2
1,519,983	+				+0.3
1,519,983	+				-2.1
1,519,985	-				+0.5
1,519,986	+				-0.8
1,519,989	-				-0.1
1,520,002	-				-0.9
1,520,003	+				+0.8
1,520,003	+				-2.1
1,520,003	+				+0.0
1,520,005	-				+0.3
1,520,005	-				-0.2
1,520,005	-				+1.1
1,520,006	+				-1.0
1,520,006	+				+1.3
1,520,006	+				-0.1
1,520,007	-				+0.5
1,520,007	-				+0.5
1,520,007	-				-0.4
1,520,007	-				+0.1
1,520,007	-				+0.1
1,520,008	+				-0.2
1,520,008	+				-0.0
1,520,008	+				-0.3
1,520,008	+				+1.2
1,520,008	+				-0.4
1,520,008	+				+1.6
1,520,009	-				-0.1
1,520,009	-				+0.4
1,520,009	-				+0.4
1,520,009	-				-0.1
1,520,010	+				+0.4
1,520,010	+				+0.9
1,520,011	-				-1.7
1,520,012	+				+1.0
1,520,012	+				-0.6
1,520,105	-				-4.5
1,520,105	-				+0.3
1,520,106	+				+0.6
1,520,114	-		MMJJ_RS08255	0.11	-0.2
1,520,114	-		MMJJ_RS08255	0.11	+0.5
1,520,120	+		MMJJ_RS08255	0.12	+1.5
1,520,120	+		MMJJ_RS08255	0.12	-4.6
1,520,131	+		MMJJ_RS08255	0.14	+0.9
1,520,140	+		MMJJ_RS08255	0.16	+0.2
1,520,170	+		MMJJ_RS08255	0.22	+0.7
1,520,226	+		MMJJ_RS08255	0.32	+0.9
1,520,232	-		MMJJ_RS08255	0.33	+1.6
1,520,232	-		MMJJ_RS08255	0.33	-0.4
1,520,233	+		MMJJ_RS08255	0.34	+1.8
1,520,233	+		MMJJ_RS08255	0.34	+0.2
1,520,233	+		MMJJ_RS08255	0.34	-3.3
1,520,314	+		MMJJ_RS08255	0.49	-2.4
1,520,319	-		MMJJ_RS08255	0.50	-0.6
1,520,320	+		MMJJ_RS08255	0.50	+0.2
1,520,333	-		MMJJ_RS08255	0.52	+0.8
1,520,333	-		MMJJ_RS08255	0.52	-2.8
1,520,333	-		MMJJ_RS08255	0.52	-1.6
1,520,333	-		MMJJ_RS08255	0.52	-1.2
1,520,334	+		MMJJ_RS08255	0.53	+0.6
1,520,334	+		MMJJ_RS08255	0.53	+1.1
1,520,334	+		MMJJ_RS08255	0.53	-0.2
1,520,336	+		MMJJ_RS08255	0.53	+0.2
1,520,336	+		MMJJ_RS08255	0.53	+0.1
1,520,337	-		MMJJ_RS08255	0.53	+0.2
1,520,337	-		MMJJ_RS08255	0.53	-0.6
1,520,337	-		MMJJ_RS08255	0.53	-0.2
1,520,337	-		MMJJ_RS08255	0.53	-0.0
1,520,337	-		MMJJ_RS08255	0.53	-1.9
1,520,337	-		MMJJ_RS08255	0.53	-0.9
1,520,338	+		MMJJ_RS08255	0.53	-0.8
1,520,338	+		MMJJ_RS08255	0.53	-0.6
1,520,338	+		MMJJ_RS08255	0.53	-0.2
1,520,338	+		MMJJ_RS08255	0.53	-0.0
1,520,338	+		MMJJ_RS08255	0.53	+0.7
1,520,391	+		MMJJ_RS08255	0.63	+0.1
1,520,442	-		MMJJ_RS08255	0.73	+0.6
1,520,482	+		MMJJ_RS08255	0.81	+0.1
1,520,488	-		MMJJ_RS08255	0.82	+0.1
1,520,488	-		MMJJ_RS08255	0.82	+0.0
1,520,506	+		MMJJ_RS08255	0.85	-1.3
1,520,513	-		MMJJ_RS08255	0.87	-0.5
1,520,513	-		MMJJ_RS08255	0.87	+0.3
1,520,514	+		MMJJ_RS08255	0.87	-0.0
1,520,514	+		MMJJ_RS08255	0.87	+0.3
1,520,517	-		MMJJ_RS08255	0.87	+1.2
1,520,518	+		MMJJ_RS08255	0.88	+0.3
1,520,522	-		MMJJ_RS08255	0.88	+0.8
1,520,523	+		MMJJ_RS08255	0.88	+0.1
1,520,548	+				-0.4
1,520,576	+				-3.7
1,520,578	+				+0.2
1,520,578	+				+0.2
1,520,578	+				-0.1
1,520,605	-				+0.3
1,520,606	+				+0.1
1,520,606	+				+0.6
1,520,611	-				+0.2
1,520,611	-				-0.1
1,520,611	-				+0.7
1,520,632	-				-1.2
1,520,632	-				+0.3
1,520,636	-				-4.6
1,520,636	-				-0.1
1,520,636	-				-4.7
1,520,636	-				-0.3
1,520,636	-				-0.0
1,520,653	-				+0.8
1,520,653	-				-0.3
1,520,654	+				+0.7
1,520,745	-		MMJJ_RS08260	0.21	+0.3
1,520,746	+		MMJJ_RS08260	0.21	-4.3
1,520,758	-		MMJJ_RS08260	0.23	+0.1
1,520,784	-		MMJJ_RS08260	0.26	-2.9
1,520,788	+		MMJJ_RS08260	0.27	+0.4
1,520,813	+		MMJJ_RS08260	0.30	+0.1
1,520,815	-		MMJJ_RS08260	0.30	+0.7
1,520,816	+		MMJJ_RS08260	0.30	+0.2
1,520,853	-		MMJJ_RS08260	0.35	-0.7
1,520,910	-		MMJJ_RS08260	0.43	+0.1
1,520,911	+		MMJJ_RS08260	0.43	-0.7
1,520,938	-		MMJJ_RS08260	0.46	+0.1
1,520,939	+		MMJJ_RS08260	0.47	+1.6
1,520,939	+		MMJJ_RS08260	0.47	+0.1
1,520,946	-		MMJJ_RS08260	0.48	-0.5
1,520,946	-		MMJJ_RS08260	0.48	+1.2
1,521,001	+		MMJJ_RS08260	0.55	+0.7
1,521,034	-		MMJJ_RS08260	0.59	+1.0
1,521,034	-		MMJJ_RS08260	0.59	+1.3
1,521,034	-		MMJJ_RS08260	0.59	+0.7
1,521,034	-		MMJJ_RS08260	0.59	+0.3
1,521,034	-		MMJJ_RS08260	0.59	-0.0
1,521,035	+		MMJJ_RS08260	0.59	-4.8
1,521,035	+		MMJJ_RS08260	0.59	-2.4
1,521,035	+		MMJJ_RS08260	0.59	-1.6
1,521,035	+		MMJJ_RS08260	0.59	+0.9
1,521,035	+		MMJJ_RS08260	0.59	+0.1
1,521,035	+		MMJJ_RS08260	0.59	+0.5
1,521,036	-		MMJJ_RS08260	0.59	+0.1
1,521,037	+		MMJJ_RS08260	0.59	-1.2
1,521,037	+		MMJJ_RS08260	0.59	-4.5
1,521,037	+		MMJJ_RS08260	0.59	+1.8
1,521,070	-		MMJJ_RS08260	0.64	-2.2
1,521,078	-		MMJJ_RS08260	0.65	-0.2
1,521,081	+		MMJJ_RS08260	0.65	-1.0
1,521,108	+		MMJJ_RS08260	0.69	+0.5
1,521,169	-		MMJJ_RS08260	0.77	-2.6
1,521,191	+		MMJJ_RS08260	0.80	-0.4
1,521,193	-		MMJJ_RS08260	0.80	+0.3
1,521,198	-		MMJJ_RS08260	0.81	+0.9
1,521,211	-		MMJJ_RS08260	0.82	+1.6
1,521,212	+		MMJJ_RS08260	0.82	-1.6
1,521,238	-		MMJJ_RS08260	0.86	+0.9
1,521,304	+				+1.5
1,521,309	-				-0.7
1,521,340	-				-0.7
1,521,345	-				-0.3
1,521,370	-				+0.0
1,521,371	+				-0.9
1,521,471	+		MMJJ_RS08265	0.10	+0.6
1,521,481	+		MMJJ_RS08265	0.11	-0.9
1,521,481	+		MMJJ_RS08265	0.11	-1.0
1,521,553	+		MMJJ_RS08265	0.18	-0.3
1,521,553	+		MMJJ_RS08265	0.18	+0.3
1,521,570	-		MMJJ_RS08265	0.20	+0.1
1,521,618	-		MMJJ_RS08265	0.24	-1.3
1,521,619	+		MMJJ_RS08265	0.24	+0.1
1,521,619	+		MMJJ_RS08265	0.24	+1.9
1,521,652	+		MMJJ_RS08265	0.28	+0.0
1,521,652	+		MMJJ_RS08265	0.28	+0.2
1,521,713	+		MMJJ_RS08265	0.33	+0.8
1,521,729	-		MMJJ_RS08265	0.35	+0.2
1,521,729	-		MMJJ_RS08265	0.35	+1.9
1,521,729	-		MMJJ_RS08265	0.35	-0.8
1,521,729	-		MMJJ_RS08265	0.35	+0.4
1,521,729	-		MMJJ_RS08265	0.35	-0.3
1,521,730	+		MMJJ_RS08265	0.35	-0.8
1,521,730	+		MMJJ_RS08265	0.35	-1.7
1,521,730	+		MMJJ_RS08265	0.35	-1.1
1,521,730	+		MMJJ_RS08265	0.35	+0.4
1,521,730	+		MMJJ_RS08265	0.35	+0.2
1,521,731	-		MMJJ_RS08265	0.35	-0.3
1,521,731	-		MMJJ_RS08265	0.35	-2.4
1,521,736	-		MMJJ_RS08265	0.36	+0.6
1,521,741	+		MMJJ_RS08265	0.36	+0.4
1,521,756	-		MMJJ_RS08265	0.38	-0.3
1,521,757	+		MMJJ_RS08265	0.38	-0.2
1,521,759	-		MMJJ_RS08265	0.38	+0.0
1,521,831	-		MMJJ_RS08265	0.45	-1.5
1,521,831	-		MMJJ_RS08265	0.45	+0.3
1,521,831	-		MMJJ_RS08265	0.45	-1.7
1,521,839	-		MMJJ_RS08265	0.45	+0.3
1,521,840	+		MMJJ_RS08265	0.46	+0.4
1,521,858	-		MMJJ_RS08265	0.47	-1.3
1,521,858	-		MMJJ_RS08265	0.47	-1.3
1,521,866	-		MMJJ_RS08265	0.48	+0.9
1,521,878	-		MMJJ_RS08265	0.49	-0.3
1,521,891	-		MMJJ_RS08265	0.50	+0.9
1,521,936	-		MMJJ_RS08265	0.55	-0.1
1,521,937	+		MMJJ_RS08265	0.55	-1.1
1,521,981	-		MMJJ_RS08265	0.59	-1.6
1,522,066	+		MMJJ_RS08265	0.67	-0.5
1,522,112	-		MMJJ_RS08265	0.72	-2.7
1,522,112	-		MMJJ_RS08265	0.72	+0.1
1,522,112	-		MMJJ_RS08265	0.72	+1.4
1,522,112	-		MMJJ_RS08265	0.72	+0.2
1,522,112	-		MMJJ_RS08265	0.72	-1.2
1,522,113	+		MMJJ_RS08265	0.72	-0.2
1,522,113	+		MMJJ_RS08265	0.72	+0.8
1,522,115	+		MMJJ_RS08265	0.72	+0.8
1,522,137	-		MMJJ_RS08265	0.74	-3.2
1,522,226	-		MMJJ_RS08265	0.82	-0.1
1,522,226	-		MMJJ_RS08265	0.82	-1.4
1,522,227	+		MMJJ_RS08265	0.83	-1.4
1,522,257	-		MMJJ_RS08265	0.85	+0.2
1,522,258	+		MMJJ_RS08265	0.85	+0.8
1,522,269	-		MMJJ_RS08265	0.87	+1.5
1,522,316	+				+0.7
1,522,339	+				-1.0