Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS07820

Experiment: McCas-formate glass attached

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS07815 and MMJJ_RS07820 are separated by 82 nucleotidesMMJJ_RS07820 and MMJJ_RS07825 are separated by 39 nucleotidesMMJJ_RS07825 and MMJJ_RS07830 are separated by 17 nucleotides MMJJ_RS07815: MMJJ_RS07815 - 2-oxoacid:acceptor oxidoreductase family protein, at 1,431,281 to 1,432,720 _RS07815 MMJJ_RS07820: MMJJ_RS07820 - bifunctional hexulose-6-phosphate synthase/ribonuclease regulator, at 1,432,803 to 1,434,119 _RS07820 MMJJ_RS07825: MMJJ_RS07825 - YciI family protein, at 1,434,159 to 1,434,449 _RS07825 MMJJ_RS07830: MMJJ_RS07830 - DUF1786 domain-containing protein, at 1,434,467 to 1,435,483 _RS07830 Position (kb) 1432 1433 1434 1435Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 1431.834 kb on - strand, within MMJJ_RS07815at 1431.835 kb on + strand, within MMJJ_RS07815at 1431.839 kb on + strand, within MMJJ_RS07815at 1431.873 kb on - strand, within MMJJ_RS07815at 1431.873 kb on - strand, within MMJJ_RS07815at 1431.873 kb on - strand, within MMJJ_RS07815at 1431.874 kb on + strand, within MMJJ_RS07815at 1431.874 kb on + strand, within MMJJ_RS07815at 1431.874 kb on + strand, within MMJJ_RS07815at 1431.874 kb on + strand, within MMJJ_RS07815at 1431.949 kb on + strandat 1431.973 kb on + strand, within MMJJ_RS07815at 1432.114 kb on - strand, within MMJJ_RS07815at 1432.114 kb on - strand, within MMJJ_RS07815at 1432.115 kb on + strand, within MMJJ_RS07815at 1432.117 kb on - strand, within MMJJ_RS07815at 1432.117 kb on - strand, within MMJJ_RS07815at 1432.117 kb on - strand, within MMJJ_RS07815at 1432.118 kb on + strand, within MMJJ_RS07815at 1432.119 kb on - strand, within MMJJ_RS07815at 1432.119 kb on - strand, within MMJJ_RS07815at 1432.120 kb on + strand, within MMJJ_RS07815at 1432.120 kb on + strand, within MMJJ_RS07815at 1432.120 kb on + strand, within MMJJ_RS07815at 1432.120 kb on + strand, within MMJJ_RS07815at 1432.120 kb on + strand, within MMJJ_RS07815at 1432.120 kb on + strand, within MMJJ_RS07815at 1432.120 kb on + strand, within MMJJ_RS07815at 1432.120 kb on + strand, within MMJJ_RS07815at 1432.120 kb on + strand, within MMJJ_RS07815at 1432.120 kb on + strand, within MMJJ_RS07815at 1432.128 kb on - strand, within MMJJ_RS07815at 1432.129 kb on + strand, within MMJJ_RS07815at 1432.185 kb on - strand, within MMJJ_RS07815at 1432.252 kb on - strand, within MMJJ_RS07815at 1432.253 kb on + strand, within MMJJ_RS07815at 1432.266 kb on + strand, within MMJJ_RS07815at 1432.365 kb on + strand, within MMJJ_RS07815at 1432.394 kb on + strand, within MMJJ_RS07815at 1432.623 kb on - strandat 1432.677 kb on - strandat 1432.723 kb on + strandat 1432.760 kb on - strandat 1432.765 kb on + strandat 1432.904 kb on - strandat 1432.968 kb on + strand, within MMJJ_RS07820at 1433.066 kb on - strand, within MMJJ_RS07820at 1433.067 kb on + strand, within MMJJ_RS07820at 1433.068 kb on - strand, within MMJJ_RS07820at 1433.068 kb on - strand, within MMJJ_RS07820at 1433.068 kb on - strand, within MMJJ_RS07820at 1433.069 kb on + strand, within MMJJ_RS07820at 1433.069 kb on + strand, within MMJJ_RS07820at 1433.101 kb on - strand, within MMJJ_RS07820at 1433.104 kb on - strand, within MMJJ_RS07820at 1433.104 kb on - strand, within MMJJ_RS07820at 1433.104 kb on - strand, within MMJJ_RS07820at 1433.105 kb on + strand, within MMJJ_RS07820at 1433.105 kb on + strand, within MMJJ_RS07820at 1433.105 kb on + strand, within MMJJ_RS07820at 1433.105 kb on + strand, within MMJJ_RS07820at 1433.113 kb on - strand, within MMJJ_RS07820at 1433.114 kb on + strand, within MMJJ_RS07820at 1433.140 kb on - strand, within MMJJ_RS07820at 1433.140 kb on - strand, within MMJJ_RS07820at 1433.209 kb on - strand, within MMJJ_RS07820at 1433.209 kb on - strand, within MMJJ_RS07820at 1433.210 kb on + strand, within MMJJ_RS07820at 1433.210 kb on + strand, within MMJJ_RS07820at 1433.210 kb on + strand, within MMJJ_RS07820at 1433.213 kb on - strand, within MMJJ_RS07820at 1433.218 kb on - strand, within MMJJ_RS07820at 1433.219 kb on + strand, within MMJJ_RS07820at 1433.219 kb on + strand, within MMJJ_RS07820at 1433.219 kb on + strand, within MMJJ_RS07820at 1433.223 kb on + strand, within MMJJ_RS07820at 1433.251 kb on - strand, within MMJJ_RS07820at 1433.276 kb on + strand, within MMJJ_RS07820at 1433.298 kb on + strand, within MMJJ_RS07820at 1433.375 kb on + strand, within MMJJ_RS07820at 1433.400 kb on + strand, within MMJJ_RS07820at 1433.400 kb on + strand, within MMJJ_RS07820at 1433.432 kb on - strand, within MMJJ_RS07820at 1433.437 kb on - strand, within MMJJ_RS07820at 1433.438 kb on + strand, within MMJJ_RS07820at 1433.525 kb on + strand, within MMJJ_RS07820at 1433.539 kb on - strand, within MMJJ_RS07820at 1433.556 kb on + strand, within MMJJ_RS07820at 1433.636 kb on - strand, within MMJJ_RS07820at 1433.643 kb on - strand, within MMJJ_RS07820at 1433.669 kb on + strand, within MMJJ_RS07820at 1433.669 kb on + strand, within MMJJ_RS07820at 1433.704 kb on - strand, within MMJJ_RS07820at 1433.704 kb on - strand, within MMJJ_RS07820at 1433.705 kb on + strand, within MMJJ_RS07820at 1433.705 kb on + strand, within MMJJ_RS07820at 1433.708 kb on + strand, within MMJJ_RS07820at 1433.708 kb on + strand, within MMJJ_RS07820at 1433.792 kb on + strand, within MMJJ_RS07820at 1433.792 kb on + strand, within MMJJ_RS07820at 1433.792 kb on + strand, within MMJJ_RS07820at 1433.794 kb on - strand, within MMJJ_RS07820at 1433.794 kb on - strand, within MMJJ_RS07820at 1433.795 kb on + strand, within MMJJ_RS07820at 1433.795 kb on + strand, within MMJJ_RS07820at 1433.858 kb on - strand, within MMJJ_RS07820at 1433.859 kb on + strand, within MMJJ_RS07820at 1433.859 kb on + strand, within MMJJ_RS07820at 1433.859 kb on + strand, within MMJJ_RS07820at 1433.859 kb on + strand, within MMJJ_RS07820at 1433.861 kb on + strand, within MMJJ_RS07820at 1433.899 kb on - strand, within MMJJ_RS07820at 1433.900 kb on + strand, within MMJJ_RS07820at 1433.972 kb on - strand, within MMJJ_RS07820at 1433.977 kb on - strand, within MMJJ_RS07820at 1434.041 kb on - strandat 1434.042 kb on + strandat 1434.130 kb on - strandat 1434.131 kb on + strandat 1434.229 kb on - strand, within MMJJ_RS07825at 1434.244 kb on - strand, within MMJJ_RS07825at 1434.262 kb on + strand, within MMJJ_RS07825at 1434.291 kb on + strand, within MMJJ_RS07825at 1434.342 kb on - strand, within MMJJ_RS07825at 1434.342 kb on - strand, within MMJJ_RS07825at 1434.362 kb on + strand, within MMJJ_RS07825at 1434.362 kb on + strand, within MMJJ_RS07825at 1434.383 kb on - strand, within MMJJ_RS07825at 1434.384 kb on + strand, within MMJJ_RS07825at 1434.441 kb on - strandat 1434.442 kb on + strandat 1434.442 kb on + strandat 1434.443 kb on - strandat 1434.443 kb on - strandat 1434.444 kb on + strandat 1434.444 kb on + strandat 1434.497 kb on - strandat 1434.498 kb on + strandat 1434.524 kb on - strandat 1434.547 kb on + strandat 1434.614 kb on + strand, within MMJJ_RS07830at 1434.647 kb on + strand, within MMJJ_RS07830at 1434.647 kb on + strand, within MMJJ_RS07830at 1434.648 kb on - strand, within MMJJ_RS07830at 1434.648 kb on - strand, within MMJJ_RS07830at 1434.648 kb on - strand, within MMJJ_RS07830at 1434.649 kb on + strand, within MMJJ_RS07830at 1434.649 kb on + strand, within MMJJ_RS07830at 1434.650 kb on - strand, within MMJJ_RS07830at 1434.650 kb on - strand, within MMJJ_RS07830at 1434.650 kb on - strand, within MMJJ_RS07830at 1434.651 kb on + strand, within MMJJ_RS07830at 1434.651 kb on + strand, within MMJJ_RS07830at 1434.651 kb on + strand, within MMJJ_RS07830at 1434.651 kb on + strand, within MMJJ_RS07830at 1434.651 kb on + strand, within MMJJ_RS07830at 1434.651 kb on + strand, within MMJJ_RS07830at 1434.651 kb on + strand, within MMJJ_RS07830at 1434.653 kb on + strand, within MMJJ_RS07830at 1434.701 kb on - strand, within MMJJ_RS07830at 1434.781 kb on - strand, within MMJJ_RS07830at 1434.781 kb on - strand, within MMJJ_RS07830at 1434.843 kb on + strand, within MMJJ_RS07830at 1434.892 kb on + strand, within MMJJ_RS07830at 1434.896 kb on + strand, within MMJJ_RS07830at 1434.914 kb on - strand, within MMJJ_RS07830at 1434.958 kb on - strand, within MMJJ_RS07830at 1434.958 kb on - strand, within MMJJ_RS07830at 1434.958 kb on - strand, within MMJJ_RS07830at 1435.019 kb on + strand, within MMJJ_RS07830at 1435.073 kb on - strand, within MMJJ_RS07830at 1435.073 kb on - strand, within MMJJ_RS07830at 1435.074 kb on + strand, within MMJJ_RS07830at 1435.074 kb on + strand, within MMJJ_RS07830

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas-formate glass attached
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1,431,834 - MMJJ_RS07815 0.38 +1.0
1,431,835 + MMJJ_RS07815 0.38 -0.6
1,431,839 + MMJJ_RS07815 0.39 +0.1
1,431,873 - MMJJ_RS07815 0.41 -0.9
1,431,873 - MMJJ_RS07815 0.41 -0.2
1,431,873 - MMJJ_RS07815 0.41 -0.1
1,431,874 + MMJJ_RS07815 0.41 +0.5
1,431,874 + MMJJ_RS07815 0.41 -0.9
1,431,874 + MMJJ_RS07815 0.41 -0.8
1,431,874 + MMJJ_RS07815 0.41 +0.7
1,431,949 + -0.4
1,431,973 + MMJJ_RS07815 0.48 +0.5
1,432,114 - MMJJ_RS07815 0.58 -1.5
1,432,114 - MMJJ_RS07815 0.58 -2.5
1,432,115 + MMJJ_RS07815 0.58 +0.4
1,432,117 - MMJJ_RS07815 0.58 +0.4
1,432,117 - MMJJ_RS07815 0.58 -1.0
1,432,117 - MMJJ_RS07815 0.58 -0.1
1,432,118 + MMJJ_RS07815 0.58 -0.2
1,432,119 - MMJJ_RS07815 0.58 -0.4
1,432,119 - MMJJ_RS07815 0.58 -0.1
1,432,120 + MMJJ_RS07815 0.58 -0.2
1,432,120 + MMJJ_RS07815 0.58 -1.9
1,432,120 + MMJJ_RS07815 0.58 +1.2
1,432,120 + MMJJ_RS07815 0.58 -0.5
1,432,120 + MMJJ_RS07815 0.58 -1.7
1,432,120 + MMJJ_RS07815 0.58 -0.1
1,432,120 + MMJJ_RS07815 0.58 +0.1
1,432,120 + MMJJ_RS07815 0.58 +0.2
1,432,120 + MMJJ_RS07815 0.58 +0.6
1,432,120 + MMJJ_RS07815 0.58 -0.9
1,432,128 - MMJJ_RS07815 0.59 +0.8
1,432,129 + MMJJ_RS07815 0.59 -1.3
1,432,185 - MMJJ_RS07815 0.63 +1.1
1,432,252 - MMJJ_RS07815 0.67 -2.4
1,432,253 + MMJJ_RS07815 0.68 +1.2
1,432,266 + MMJJ_RS07815 0.68 -0.5
1,432,365 + MMJJ_RS07815 0.75 -0.2
1,432,394 + MMJJ_RS07815 0.77 +0.2
1,432,623 - -0.6
1,432,677 - -1.8
1,432,723 + -0.5
1,432,760 - -0.6
1,432,765 + -1.7
1,432,904 - -0.3
1,432,968 + MMJJ_RS07820 0.13 +0.4
1,433,066 - MMJJ_RS07820 0.20 -1.5
1,433,067 + MMJJ_RS07820 0.20 -0.2
1,433,068 - MMJJ_RS07820 0.20 +1.0
1,433,068 - MMJJ_RS07820 0.20 +0.5
1,433,068 - MMJJ_RS07820 0.20 -0.7
1,433,069 + MMJJ_RS07820 0.20 -0.5
1,433,069 + MMJJ_RS07820 0.20 +0.1
1,433,101 - MMJJ_RS07820 0.23 +0.9
1,433,104 - MMJJ_RS07820 0.23 -2.4
1,433,104 - MMJJ_RS07820 0.23 +1.3
1,433,104 - MMJJ_RS07820 0.23 +1.2
1,433,105 + MMJJ_RS07820 0.23 +0.4
1,433,105 + MMJJ_RS07820 0.23 +0.4
1,433,105 + MMJJ_RS07820 0.23 +1.8
1,433,105 + MMJJ_RS07820 0.23 -0.6
1,433,113 - MMJJ_RS07820 0.24 +0.3
1,433,114 + MMJJ_RS07820 0.24 +1.0
1,433,140 - MMJJ_RS07820 0.26 +0.3
1,433,140 - MMJJ_RS07820 0.26 +0.9
1,433,209 - MMJJ_RS07820 0.31 -0.1
1,433,209 - MMJJ_RS07820 0.31 +0.5
1,433,210 + MMJJ_RS07820 0.31 +0.9
1,433,210 + MMJJ_RS07820 0.31 +0.7
1,433,210 + MMJJ_RS07820 0.31 +0.8
1,433,213 - MMJJ_RS07820 0.31 -0.8
1,433,218 - MMJJ_RS07820 0.32 -4.6
1,433,219 + MMJJ_RS07820 0.32 +0.3
1,433,219 + MMJJ_RS07820 0.32 +0.5
1,433,219 + MMJJ_RS07820 0.32 -0.3
1,433,223 + MMJJ_RS07820 0.32 +3.1
1,433,251 - MMJJ_RS07820 0.34 +0.1
1,433,276 + MMJJ_RS07820 0.36 +0.4
1,433,298 + MMJJ_RS07820 0.38 +0.4
1,433,375 + MMJJ_RS07820 0.43 +0.3
1,433,400 + MMJJ_RS07820 0.45 -0.2
1,433,400 + MMJJ_RS07820 0.45 +0.0
1,433,432 - MMJJ_RS07820 0.48 +0.1
1,433,437 - MMJJ_RS07820 0.48 +0.5
1,433,438 + MMJJ_RS07820 0.48 +0.9
1,433,525 + MMJJ_RS07820 0.55 +0.4
1,433,539 - MMJJ_RS07820 0.56 +0.7
1,433,556 + MMJJ_RS07820 0.57 +0.3
1,433,636 - MMJJ_RS07820 0.63 -0.1
1,433,643 - MMJJ_RS07820 0.64 -2.3
1,433,669 + MMJJ_RS07820 0.66 -0.8
1,433,669 + MMJJ_RS07820 0.66 -0.0
1,433,704 - MMJJ_RS07820 0.68 +0.0
1,433,704 - MMJJ_RS07820 0.68 +0.2
1,433,705 + MMJJ_RS07820 0.68 -0.5
1,433,705 + MMJJ_RS07820 0.68 +0.8
1,433,708 + MMJJ_RS07820 0.69 +0.5
1,433,708 + MMJJ_RS07820 0.69 +0.8
1,433,792 + MMJJ_RS07820 0.75 -1.0
1,433,792 + MMJJ_RS07820 0.75 +0.3
1,433,792 + MMJJ_RS07820 0.75 -3.1
1,433,794 - MMJJ_RS07820 0.75 -0.4
1,433,794 - MMJJ_RS07820 0.75 +1.8
1,433,795 + MMJJ_RS07820 0.75 +0.7
1,433,795 + MMJJ_RS07820 0.75 -0.9
1,433,858 - MMJJ_RS07820 0.80 +0.6
1,433,859 + MMJJ_RS07820 0.80 -0.9
1,433,859 + MMJJ_RS07820 0.80 +0.4
1,433,859 + MMJJ_RS07820 0.80 -1.4
1,433,859 + MMJJ_RS07820 0.80 +0.0
1,433,861 + MMJJ_RS07820 0.80 -0.1
1,433,899 - MMJJ_RS07820 0.83 -0.1
1,433,900 + MMJJ_RS07820 0.83 -3.4
1,433,972 - MMJJ_RS07820 0.89 -0.2
1,433,977 - MMJJ_RS07820 0.89 -2.5
1,434,041 - +1.1
1,434,042 + -0.8
1,434,130 - +1.1
1,434,131 + -0.1
1,434,229 - MMJJ_RS07825 0.24 -0.9
1,434,244 - MMJJ_RS07825 0.29 +3.0
1,434,262 + MMJJ_RS07825 0.35 +0.3
1,434,291 + MMJJ_RS07825 0.45 +1.6
1,434,342 - MMJJ_RS07825 0.63 +0.3
1,434,342 - MMJJ_RS07825 0.63 -0.7
1,434,362 + MMJJ_RS07825 0.70 -0.2
1,434,362 + MMJJ_RS07825 0.70 +0.5
1,434,383 - MMJJ_RS07825 0.77 +0.1
1,434,384 + MMJJ_RS07825 0.77 -0.6
1,434,441 - +0.5
1,434,442 + -0.5
1,434,442 + +0.7
1,434,443 - +0.7
1,434,443 - -2.2
1,434,444 + +0.2
1,434,444 + +0.0
1,434,497 - -1.1
1,434,498 + -0.2
1,434,524 - -0.5
1,434,547 + +0.4
1,434,614 + MMJJ_RS07830 0.14 -1.0
1,434,647 + MMJJ_RS07830 0.18 -0.2
1,434,647 + MMJJ_RS07830 0.18 +0.1
1,434,648 - MMJJ_RS07830 0.18 +3.2
1,434,648 - MMJJ_RS07830 0.18 +0.6
1,434,648 - MMJJ_RS07830 0.18 +1.2
1,434,649 + MMJJ_RS07830 0.18 +1.1
1,434,649 + MMJJ_RS07830 0.18 +0.4
1,434,650 - MMJJ_RS07830 0.18 +0.1
1,434,650 - MMJJ_RS07830 0.18 +0.3
1,434,650 - MMJJ_RS07830 0.18 +0.6
1,434,651 + MMJJ_RS07830 0.18 +0.5
1,434,651 + MMJJ_RS07830 0.18 +0.4
1,434,651 + MMJJ_RS07830 0.18 -4.8
1,434,651 + MMJJ_RS07830 0.18 -0.1
1,434,651 + MMJJ_RS07830 0.18 +0.6
1,434,651 + MMJJ_RS07830 0.18 -0.2
1,434,651 + MMJJ_RS07830 0.18 +0.1
1,434,653 + MMJJ_RS07830 0.18 +0.5
1,434,701 - MMJJ_RS07830 0.23 +0.5
1,434,781 - MMJJ_RS07830 0.31 +0.3
1,434,781 - MMJJ_RS07830 0.31 -0.4
1,434,843 + MMJJ_RS07830 0.37 +1.2
1,434,892 + MMJJ_RS07830 0.42 +0.3
1,434,896 + MMJJ_RS07830 0.42 +0.1
1,434,914 - MMJJ_RS07830 0.44 -1.6
1,434,958 - MMJJ_RS07830 0.48 -1.7
1,434,958 - MMJJ_RS07830 0.48 +0.4
1,434,958 - MMJJ_RS07830 0.48 -1.5
1,435,019 + MMJJ_RS07830 0.54 +1.1
1,435,073 - MMJJ_RS07830 0.60 -0.6
1,435,073 - MMJJ_RS07830 0.60 +0.3
1,435,074 + MMJJ_RS07830 0.60 +0.0
1,435,074 + MMJJ_RS07830 0.60 +0.5

Or see this region's nucleotide sequence