Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS07795

Experiment: McCas-formate glass attached

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas-formate glass attached
1,426,620	+				+0.7
1,426,702	-		MMJJ_RS07785	0.88	-2.1
1,426,703	+		MMJJ_RS07785	0.88	+1.5
1,426,891	+				+0.2
1,426,926	-				-0.3
1,426,926	-				-0.3
1,426,927	+				-0.0
1,426,983	-		MMJJ_RS07790	0.17	-0.2
1,426,983	-		MMJJ_RS07790	0.17	+0.3
1,426,984	+		MMJJ_RS07790	0.17	+0.1
1,426,984	+		MMJJ_RS07790	0.17	-1.7
1,426,991	-		MMJJ_RS07790	0.19	+0.1
1,426,992	+		MMJJ_RS07790	0.19	-1.1
1,426,992	+		MMJJ_RS07790	0.19	-4.1
1,426,992	+		MMJJ_RS07790	0.19	-0.7
1,427,015	-		MMJJ_RS07790	0.24	-1.5
1,427,015	-		MMJJ_RS07790	0.24	-0.1
1,427,066	+		MMJJ_RS07790	0.35	-1.3
1,427,140	-		MMJJ_RS07790	0.52	+0.1
1,427,140	-		MMJJ_RS07790	0.52	+0.9
1,427,141	+		MMJJ_RS07790	0.52	-1.6
1,427,208	-		MMJJ_RS07790	0.67	+0.1
1,427,208	-		MMJJ_RS07790	0.67	+0.7
1,427,208	-		MMJJ_RS07790	0.67	-1.4
1,427,208	-		MMJJ_RS07790	0.67	+0.7
1,427,208	-		MMJJ_RS07790	0.67	-0.3
1,427,217	+		MMJJ_RS07790	0.69	+0.1
1,427,222	-		MMJJ_RS07790	0.70	-0.2
1,427,245	-		MMJJ_RS07790	0.75	+0.5
1,427,245	-		MMJJ_RS07790	0.75	-2.1
1,427,259	-		MMJJ_RS07790	0.79	+0.2
1,427,260	+		MMJJ_RS07790	0.79	+0.4
1,427,260	+		MMJJ_RS07790	0.79	+0.8
1,427,260	+		MMJJ_RS07790	0.79	-1.4
1,427,269	-		MMJJ_RS07790	0.81	-1.8
1,427,269	-		MMJJ_RS07790	0.81	+0.6
1,427,269	-		MMJJ_RS07790	0.81	-0.3
1,427,269	-		MMJJ_RS07790	0.81	+0.7
1,427,269	-		MMJJ_RS07790	0.81	-0.1
1,427,269	-		MMJJ_RS07790	0.81	+0.2
1,427,270	+		MMJJ_RS07790	0.81	+0.9
1,427,270	+		MMJJ_RS07790	0.81	-5.8
1,427,270	+		MMJJ_RS07790	0.81	-1.8
1,427,299	+		MMJJ_RS07790	0.87	+0.3
1,427,304	-		MMJJ_RS07790	0.89	-0.2
1,427,305	+		MMJJ_RS07790	0.89	+0.3
1,427,344	+				-3.0
1,427,350	-				-0.2
1,427,376	+				-0.2
1,427,380	-				+0.6
1,427,381	+				-0.2
1,427,381	+				+0.2
1,427,384	-				-0.7
1,427,385	+				+0.8
1,427,385	+				+0.4
1,427,385	+				+0.9
1,427,386	-				+2.0
1,427,386	-				+0.9
1,427,406	-				+1.2
1,427,406	-				+0.9
1,427,407	+				-2.3
1,427,411	-				+0.3
1,427,411	-				-0.2
1,427,411	-				+1.0
1,427,411	-				+0.8
1,427,420	+				+0.5
1,427,429	-				+0.5
1,427,455	-				-0.1
1,427,457	-				-0.4
1,427,458	+				+1.4
1,427,458	+				-1.9
1,427,468	-				+0.9
1,427,471	+				+0.8
1,427,471	+				+0.5
1,427,484	-				+0.0
1,427,485	+				+1.2
1,427,486	-				-0.3
1,427,486	-				+1.4
1,427,486	-				+1.6
1,427,487	+				-0.2
1,427,487	+				-0.5
1,427,487	+				-0.1
1,427,487	+				-0.2
1,427,488	-				-0.9
1,427,488	-				+1.0
1,427,488	-				+0.3
1,427,488	-				-1.4
1,427,488	-				-0.3
1,427,488	-				+0.6
1,427,488	-				+0.6
1,427,489	+				+0.3
1,427,489	+				+0.4
1,427,499	-				+0.2
1,427,499	-				+0.6
1,427,503	-				+0.2
1,427,503	-				-0.4
1,427,503	-				+0.0
1,427,503	-				+0.4
1,427,503	-				+0.8
1,427,504	+				-0.0
1,427,507	-				+0.1
1,427,508	+				+3.0
1,427,508	+				-0.2
1,427,522	-				-0.5
1,427,523	+				+0.2
1,427,523	+				-4.4
1,427,524	-				+0.2
1,427,536	-				+1.1
1,427,536	-				+0.3
1,427,536	-				-0.4
1,427,536	-				+0.3
1,427,536	-				+0.9
1,427,536	-				+0.3
1,427,537	+				+0.4
1,427,537	+				+1.0
1,427,537	+				+0.5
1,427,537	+				-0.5
1,427,537	+				+0.8
1,427,537	+				+0.5
1,427,537	+				-1.3
1,427,540	+				-0.2
1,427,540	+				-0.4
1,427,540	+				+0.6
1,427,540	+				-1.2
1,427,575	-				-0.0
1,427,582	-				-0.6
1,427,582	-				+0.2
1,427,582	-				-0.1
1,427,597	-				+0.9
1,427,602	-				+0.9
1,427,603	+				-0.0
1,427,616	+				-1.8
1,427,704	-		MMJJ_RS07795	0.16	+0.4
1,427,724	-		MMJJ_RS07795	0.19	-0.1
1,427,840	-		MMJJ_RS07795	0.40	+0.1
1,427,847	+		MMJJ_RS07795	0.42	+1.3
1,427,895	-		MMJJ_RS07795	0.50	+0.1
1,427,953	-		MMJJ_RS07795	0.61	+0.5
1,427,953	-		MMJJ_RS07795	0.61	+0.3
1,428,021	-		MMJJ_RS07795	0.73	+1.0
1,428,022	+		MMJJ_RS07795	0.73	-2.9
1,428,023	-		MMJJ_RS07795	0.73	+1.3
1,428,024	+		MMJJ_RS07795	0.74	+0.2
1,428,024	+		MMJJ_RS07795	0.74	+0.2
1,428,038	-		MMJJ_RS07795	0.76	+0.4
1,428,038	-		MMJJ_RS07795	0.76	-0.0
1,428,041	+		MMJJ_RS07795	0.77	-0.8
1,428,048	-		MMJJ_RS07795	0.78	-0.4
1,428,048	-		MMJJ_RS07795	0.78	-0.0
1,428,090	+		MMJJ_RS07795	0.85	-0.0
1,428,161	-				-0.3
1,428,161	-				+0.5
1,428,162	+				-0.6
1,428,164	+				-0.7
1,428,227	-				+0.6
1,428,227	-				+0.5
1,428,227	-				+0.7
1,428,227	-				-0.5
1,428,227	-				-0.4
1,428,228	+				-0.7
1,428,228	+				-4.5
1,428,228	+				+0.9
1,428,228	+				+0.2
1,428,234	-				+0.8
1,428,266	+				+0.1
1,428,293	-				+0.5
1,428,293	-				-0.0
1,428,293	-				+0.9
1,428,294	+				-1.2
1,428,312	-				-0.3
1,428,322	-				+1.3
1,428,374	-				+1.1
1,428,375	+				-0.9
1,428,375	+				+2.0
1,428,375	+				-0.5
1,428,421	+		MMJJ_RS07800	0.12	+0.8
1,428,431	+		MMJJ_RS07800	0.13	-0.7
1,428,483	-		MMJJ_RS07800	0.16	-0.1
1,428,489	+		MMJJ_RS07800	0.16	-0.4
1,428,582	-		MMJJ_RS07800	0.22	-0.1
1,428,582	-		MMJJ_RS07800	0.22	-0.3
1,428,582	-		MMJJ_RS07800	0.22	+0.7
1,428,582	-		MMJJ_RS07800	0.22	+0.1
1,428,582	-		MMJJ_RS07800	0.22	+0.0
1,428,582	-		MMJJ_RS07800	0.22	+0.6
1,428,582	-		MMJJ_RS07800	0.22	+0.3
1,428,583	+		MMJJ_RS07800	0.22	-0.5
1,428,633	+		MMJJ_RS07800	0.25	-2.2
1,428,664	-				-0.3
1,428,681	+		MMJJ_RS07800	0.28	-1.1
1,428,681	+		MMJJ_RS07800	0.28	-2.3
1,428,704	-		MMJJ_RS07800	0.29	+0.7
1,428,726	+		MMJJ_RS07800	0.30	+0.4
1,428,736	+		MMJJ_RS07800	0.31	+0.7
1,428,824	-		MMJJ_RS07800	0.36	+0.5
1,428,824	-		MMJJ_RS07800	0.36	+0.2
1,428,824	-		MMJJ_RS07800	0.36	+1.4
1,428,825	+		MMJJ_RS07800	0.36	+1.7
1,428,825	+		MMJJ_RS07800	0.36	-0.1
1,428,825	+		MMJJ_RS07800	0.36	+0.0
1,428,828	+		MMJJ_RS07800	0.36	+0.8
1,428,835	-		MMJJ_RS07800	0.37	-0.2
1,428,836	+		MMJJ_RS07800	0.37	-1.5
1,428,903	-		MMJJ_RS07800	0.41	+1.2
1,428,904	+		MMJJ_RS07800	0.41	-3.0
1,428,953	+		MMJJ_RS07800	0.44	+0.5
1,428,984	-		MMJJ_RS07800	0.46	-0.0
1,428,984	-		MMJJ_RS07800	0.46	+0.4
1,428,985	+		MMJJ_RS07800	0.46	+0.9
1,429,095	-		MMJJ_RS07800	0.52	+0.2
1,429,096	+		MMJJ_RS07800	0.53	+0.5
1,429,116	-		MMJJ_RS07800	0.54	-0.2
1,429,116	-		MMJJ_RS07800	0.54	-0.7
1,429,146	-		MMJJ_RS07800	0.55	+0.8
1,429,147	+		MMJJ_RS07800	0.56	+0.4
1,429,147	+		MMJJ_RS07800	0.56	+0.2