Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS07645

Experiment: McCas-formate glass attached

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas-formate glass attached
1,398,563	-		MMJJ_RS07640	0.60	+0.1
1,398,612	-		MMJJ_RS07640	0.63	+0.4
1,398,612	-		MMJJ_RS07640	0.63	-0.6
1,398,613	+		MMJJ_RS07640	0.63	-5.6
1,398,623	+		MMJJ_RS07640	0.63	-0.2
1,398,641	+				-0.6
1,398,653	+		MMJJ_RS07640	0.65	-1.4
1,398,653	+		MMJJ_RS07640	0.65	+0.6
1,398,689	-		MMJJ_RS07640	0.67	+0.2
1,398,689	-		MMJJ_RS07640	0.67	-0.7
1,398,689	-		MMJJ_RS07640	0.67	-0.8
1,398,689	-		MMJJ_RS07640	0.67	+0.3
1,398,698	+		MMJJ_RS07640	0.67	-0.7
1,398,706	+		MMJJ_RS07640	0.68	-0.9
1,398,737	-		MMJJ_RS07640	0.69	-0.6
1,398,737	-		MMJJ_RS07640	0.69	+0.1
1,398,738	+		MMJJ_RS07640	0.69	-2.4
1,398,742	-		MMJJ_RS07640	0.70	-0.8
1,398,742	-		MMJJ_RS07640	0.70	-0.2
1,398,742	-		MMJJ_RS07640	0.70	-3.0
1,398,742	-		MMJJ_RS07640	0.70	-0.2
1,398,743	+		MMJJ_RS07640	0.70	+0.3
1,398,790	-		MMJJ_RS07640	0.72	-0.2
1,398,791	+		MMJJ_RS07640	0.72	+0.1
1,398,797	-		MMJJ_RS07640	0.72	-1.6
1,398,835	-		MMJJ_RS07640	0.74	+0.2
1,398,871	-		MMJJ_RS07640	0.76	-1.9
1,398,890	+		MMJJ_RS07640	0.77	-3.0
1,398,890	+		MMJJ_RS07640	0.77	-0.6
1,398,898	-		MMJJ_RS07640	0.78	-1.8
1,398,898	-		MMJJ_RS07640	0.78	-1.2
1,398,899	+		MMJJ_RS07640	0.78	+0.4
1,398,899	+		MMJJ_RS07640	0.78	-0.1
1,398,963	+		MMJJ_RS07640	0.81	-0.3
1,398,963	+		MMJJ_RS07640	0.81	-0.6
1,398,968	-		MMJJ_RS07640	0.81	-2.7
1,399,061	+		MMJJ_RS07640	0.86	+0.3
1,399,073	+		MMJJ_RS07640	0.87	-0.8
1,399,093	-		MMJJ_RS07640	0.88	+0.1
1,399,119	+		MMJJ_RS07640	0.89	-3.0
1,399,119	+		MMJJ_RS07640	0.89	-0.0
1,399,144	-				+0.8
1,399,158	-				-4.1
1,399,221	+				-1.1
1,399,283	-				-1.6
1,399,283	-				+1.3
1,399,323	-				+0.4
1,399,329	+				-0.7
1,399,333	-				+0.6
1,399,333	-				+0.8
1,399,337	+				+1.4
1,399,380	-				+0.8
1,399,381	+				+1.5
1,399,434	-				+0.8
1,399,446	-				-0.4
1,399,468	-				-1.1
1,399,469	+				-1.4
1,399,470	-				+0.1
1,399,470	-				-1.0
1,399,471	+				-0.8
1,399,471	+				-0.9
1,399,471	+				-0.2
1,399,471	+				-0.7
1,399,472	-				-0.9
1,399,472	-				-1.1
1,399,472	-				+0.6
1,399,473	+				+0.3
1,399,473	+				-0.2
1,399,473	+				+0.5
1,399,473	+				-0.7
1,399,474	-				+0.5
1,399,474	-				-0.2
1,399,475	+				-0.7
1,399,475	+				+0.5
1,399,493	+				+2.0
1,399,494	-				+0.2
1,399,494	-				-1.0
1,399,495	+				+0.8
1,399,517	-				+0.2
1,399,517	-				+0.3
1,399,517	-				+0.3
1,399,517	-				+0.6
1,399,517	-				-0.5
1,399,517	-				+0.8
1,399,517	-				-3.6
1,399,518	+				-0.7
1,399,518	+				-1.5
1,399,518	+				-0.2
1,399,518	+				-1.4
1,399,518	+				-0.4
1,399,519	-				+0.4
1,399,519	-				+1.5
1,399,519	-				-0.3
1,399,519	-				+0.3
1,399,519	-				+0.6
1,399,519	-				+2.4
1,399,519	-				+0.0
1,399,519	-				-0.5
1,399,520	+				+0.9
1,399,520	+				+0.7
1,399,520	+				+0.6
1,399,520	+				-3.0
1,399,520	+				+0.6
1,399,520	+				+1.5
1,399,520	+				+1.2
1,399,520	+				-3.2
1,399,520	+				+0.4
1,399,521	-				+0.4
1,399,521	-				-0.1
1,399,521	-				+0.1
1,399,521	-				+0.7
1,399,522	+				+0.4
1,399,522	+				-0.5
1,399,522	+				+0.4
1,399,522	+				+0.2
1,399,522	+				+0.3
1,399,558	+				+0.1
1,399,561	-		MMJJ_RS07645	0.11	-0.3
1,399,562	+		MMJJ_RS07645	0.11	-0.9
1,399,562	+		MMJJ_RS07645	0.11	+1.2
1,399,564	-		MMJJ_RS07645	0.12	-0.0
1,399,564	-		MMJJ_RS07645	0.12	-0.6
1,399,564	-		MMJJ_RS07645	0.12	-4.8
1,399,596	+		MMJJ_RS07645	0.25	+0.2
1,399,598	-		MMJJ_RS07645	0.26	+0.9
1,399,598	-		MMJJ_RS07645	0.26	-0.2
1,399,598	-		MMJJ_RS07645	0.26	-0.6
1,399,598	-		MMJJ_RS07645	0.26	+1.4
1,399,598	-		MMJJ_RS07645	0.26	+0.6
1,399,598	-		MMJJ_RS07645	0.26	+0.3
1,399,598	-		MMJJ_RS07645	0.26	+0.0
1,399,598	-		MMJJ_RS07645	0.26	+0.8
1,399,599	+		MMJJ_RS07645	0.26	-0.7
1,399,599	+		MMJJ_RS07645	0.26	-0.3
1,399,600	-		MMJJ_RS07645	0.26	+0.7
1,399,600	-		MMJJ_RS07645	0.26	+0.9
1,399,600	-		MMJJ_RS07645	0.26	-0.7
1,399,601	+		MMJJ_RS07645	0.27	-0.9
1,399,608	-		MMJJ_RS07645	0.30	+1.3
1,399,609	+		MMJJ_RS07645	0.30	+0.3
1,399,633	+		MMJJ_RS07645	0.40	+0.2
1,399,690	+		MMJJ_RS07645	0.63	-0.1
1,399,690	+		MMJJ_RS07645	0.63	+0.7
1,399,725	+		MMJJ_RS07645	0.77	+0.5
1,399,778	-				-3.6
1,399,809	-				+0.3
1,399,821	-				+1.2
1,399,909	+				+0.2
1,399,918	-				-0.2
1,399,918	-				+0.5
1,399,919	+				+2.1
1,399,929	-				+0.4
1,399,953	-				-0.2
1,399,953	-				-0.7
1,399,953	-				+0.2
1,399,953	-				+0.6
1,399,953	-				-0.5
1,399,953	-				+1.0
1,399,953	-				+0.6
1,399,954	+				-2.9
1,399,954	+				-0.4
1,399,954	+				-3.0
1,399,955	-				-0.0
1,399,955	-				+1.5
1,399,956	+				-1.1
1,399,958	-				-0.5
1,399,958	-				+0.5
1,399,958	-				+1.3
1,399,959	+				+0.1
1,399,959	+				-0.1
1,399,959	+				-0.2
1,399,960	-				-0.4
1,399,960	-				-1.9
1,399,960	-				-0.2
1,399,960	-				-4.7
1,399,960	-				+0.0
1,399,960	-				-0.1
1,399,960	-				-1.6
1,399,961	+				+0.5
1,399,961	+				-4.9
1,399,962	-				+0.9
1,399,962	-				+0.6
1,399,962	-				-1.4
1,399,962	-				-0.5
1,399,963	+				+0.1
1,399,963	+				+0.1
1,399,963	+				-1.5
1,399,965	-				+0.5
1,399,965	-				-1.1
1,399,965	-				-1.3
1,399,965	-				+0.7
1,399,965	-				-0.9
1,399,965	-				+1.7
1,399,966	+				+1.1
1,399,966	+				-2.2
1,399,969	-				-0.5
1,399,969	-				+1.1
1,399,969	-				-0.4
1,399,970	+				+1.0
1,399,970	+				+1.0
1,399,970	+				+0.2
1,399,970	+				-0.2
1,399,973	-				+0.7
1,399,973	-				+0.5
1,399,973	-				+0.9
1,399,974	+				-1.0
1,399,974	+				+0.9
1,399,974	+				-0.5
1,399,974	+				-0.1
1,399,974	+				-1.4
1,399,974	+				-1.4
1,399,984	+				-2.0
1,400,018	-				+0.6
1,400,021	-				-3.9
1,400,022	+				+0.1
1,400,022	+				-1.2
1,400,032	-				-1.1
1,400,032	-				-0.3
1,400,033	+				-0.3
1,400,080	-				+0.2
1,400,081	+				-0.1
1,400,081	+				-0.6
1,400,094	+				-0.0
1,400,136	-		MMJJ_RS07650	0.13	+0.5
1,400,136	-		MMJJ_RS07650	0.13	-1.4
1,400,137	+		MMJJ_RS07650	0.14	-0.1
1,400,137	+		MMJJ_RS07650	0.14	-0.2
1,400,137	+		MMJJ_RS07650	0.14	-1.0
1,400,170	-		MMJJ_RS07650	0.18	-0.8
1,400,170	-		MMJJ_RS07650	0.18	-0.3
1,400,170	-		MMJJ_RS07650	0.18	-0.3
1,400,171	+		MMJJ_RS07650	0.18	+0.4
1,400,210	-		MMJJ_RS07650	0.22	-1.8
1,400,230	-		MMJJ_RS07650	0.25	-3.2
1,400,279	-		MMJJ_RS07650	0.31	-3.6
1,400,288	-		MMJJ_RS07650	0.32	-1.2
1,400,288	-		MMJJ_RS07650	0.32	-2.1
1,400,288	-		MMJJ_RS07650	0.32	+0.0
1,400,289	+		MMJJ_RS07650	0.32	-1.5
1,400,299	-		MMJJ_RS07650	0.33	+0.4
1,400,331	-		MMJJ_RS07650	0.37	+0.1
1,400,332	+		MMJJ_RS07650	0.37	-0.4
1,400,332	+		MMJJ_RS07650	0.37	+0.4
1,400,341	-		MMJJ_RS07650	0.38	+0.2
1,400,341	-		MMJJ_RS07650	0.38	+1.5
1,400,342	+		MMJJ_RS07650	0.38	-2.6
1,400,342	+		MMJJ_RS07650	0.38	+1.0
1,400,342	+		MMJJ_RS07650	0.38	-0.2
1,400,344	-		MMJJ_RS07650	0.39	+1.1
1,400,351	+		MMJJ_RS07650	0.40	+0.2
1,400,358	-		MMJJ_RS07650	0.40	-1.4
1,400,359	+		MMJJ_RS07650	0.40	+1.8
1,400,359	+		MMJJ_RS07650	0.40	+0.1
1,400,359	+		MMJJ_RS07650	0.40	+0.3
1,400,359	+		MMJJ_RS07650	0.40	-0.3
1,400,359	+		MMJJ_RS07650	0.40	+0.9
1,400,359	+		MMJJ_RS07650	0.40	-0.5
1,400,365	+		MMJJ_RS07650	0.41	+0.2
1,400,365	+		MMJJ_RS07650	0.41	+0.1
1,400,392	-		MMJJ_RS07650	0.44	-0.8
1,400,394	-		MMJJ_RS07650	0.45	-0.5
1,400,395	+		MMJJ_RS07650	0.45	-0.1
1,400,395	+		MMJJ_RS07650	0.45	+0.1
1,400,459	+		MMJJ_RS07650	0.53	-0.8
1,400,511	-		MMJJ_RS07650	0.59	+0.6
1,400,512	+		MMJJ_RS07650	0.59	-5.1
1,400,512	+		MMJJ_RS07650	0.59	+0.5
1,400,558	-		MMJJ_RS07650	0.65	-0.7
1,400,558	-		MMJJ_RS07650	0.65	+1.2
1,400,567	-		MMJJ_RS07650	0.66	+1.1
1,400,575	-		MMJJ_RS07650	0.67	-3.8
1,400,576	+		MMJJ_RS07650	0.67	-0.5
1,400,580	+		MMJJ_RS07650	0.67	+0.2
1,400,593	-		MMJJ_RS07650	0.69	-2.0
1,400,593	-		MMJJ_RS07650	0.69	+0.4
1,400,593	-		MMJJ_RS07650	0.69	-3.0
1,400,593	-		MMJJ_RS07650	0.69	-3.1
1,400,594	+		MMJJ_RS07650	0.69	-0.2
1,400,594	+		MMJJ_RS07650	0.69	-1.0
1,400,594	+		MMJJ_RS07650	0.69	-0.1
1,400,697	-		MMJJ_RS07650	0.81	-0.5
1,400,697	-		MMJJ_RS07650	0.81	-0.1
1,400,697	-		MMJJ_RS07650	0.81	-2.0
1,400,698	+		MMJJ_RS07650	0.82	-0.7
1,400,698	+		MMJJ_RS07650	0.82	-2.0
1,400,698	+		MMJJ_RS07650	0.82	-0.1
1,400,698	+		MMJJ_RS07650	0.82	-1.3
1,400,703	+		MMJJ_RS07650	0.82	+0.3