Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS07445

Experiment: McCas-formate glass attached

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas-formate glass attached
1,367,245	+		MMJJ_RS07440	0.24	+0.2
1,367,288	-		MMJJ_RS07440	0.28	-1.6
1,367,289	+		MMJJ_RS07440	0.28	-0.8
1,367,289	+		MMJJ_RS07440	0.28	+0.1
1,367,375	-		MMJJ_RS07440	0.35	+0.1
1,367,376	+		MMJJ_RS07440	0.35	-3.1
1,367,447	-		MMJJ_RS07440	0.42	+0.0
1,367,477	+		MMJJ_RS07440	0.44	+0.2
1,367,512	+		MMJJ_RS07440	0.48	+0.5
1,367,544	+		MMJJ_RS07440	0.50	-0.6
1,367,545	-		MMJJ_RS07440	0.50	+0.8
1,367,546	+		MMJJ_RS07440	0.51	-1.5
1,367,546	+		MMJJ_RS07440	0.51	-1.9
1,367,546	+		MMJJ_RS07440	0.51	-0.0
1,367,546	+		MMJJ_RS07440	0.51	+0.7
1,367,546	+		MMJJ_RS07440	0.51	-2.4
1,367,550	+		MMJJ_RS07440	0.51	-0.3
1,367,622	-		MMJJ_RS07440	0.57	-0.7
1,367,622	-		MMJJ_RS07440	0.57	-0.0
1,367,680	-		MMJJ_RS07440	0.63	+0.6
1,367,711	+		MMJJ_RS07440	0.65	-1.0
1,367,711	+		MMJJ_RS07440	0.65	+0.3
1,367,772	-		MMJJ_RS07440	0.71	-0.8
1,367,776	+		MMJJ_RS07440	0.71	-0.0
1,367,916	-		MMJJ_RS07440	0.84	+0.9
1,367,949	-		MMJJ_RS07440	0.87	-0.2
1,367,950	+		MMJJ_RS07440	0.87	+0.5
1,367,950	+		MMJJ_RS07440	0.87	+0.3
1,367,982	-		MMJJ_RS07440	0.90	-0.3
1,368,099	+				-0.4
1,368,119	-				+0.1
1,368,120	+				-0.0
1,368,120	+				+0.7
1,368,138	+				+0.0
1,368,145	+				+0.6
1,368,148	-				+0.5
1,368,148	-				+0.2
1,368,149	+				+0.3
1,368,157	+				+0.3
1,368,159	+				+0.5
1,368,161	-				+0.1
1,368,161	-				+0.3
1,368,162	+				+0.3
1,368,162	+				+0.5
1,368,167	+				-0.4
1,368,182	+				+0.5
1,368,186	-				-0.8
1,368,283	+		MMJJ_RS07445	0.10	+0.9
1,368,317	-		MMJJ_RS07445	0.15	+1.1
1,368,318	+		MMJJ_RS07445	0.15	+0.7
1,368,336	-		MMJJ_RS07445	0.17	-0.2
1,368,336	-		MMJJ_RS07445	0.17	+0.2
1,368,339	+		MMJJ_RS07445	0.17	-2.9
1,368,339	+		MMJJ_RS07445	0.17	-1.8
1,368,339	+		MMJJ_RS07445	0.17	-0.3
1,368,375	+		MMJJ_RS07445	0.22	+0.6
1,368,424	-		MMJJ_RS07445	0.28	+0.9
1,368,424	-		MMJJ_RS07445	0.28	+0.4
1,368,425	+		MMJJ_RS07445	0.28	-3.8
1,368,425	+		MMJJ_RS07445	0.28	+0.5
1,368,530	-		MMJJ_RS07445	0.41	+0.9
1,368,531	+		MMJJ_RS07445	0.42	+0.2
1,368,531	+		MMJJ_RS07445	0.42	-3.3
1,368,561	-		MMJJ_RS07445	0.45	+0.1
1,368,584	-		MMJJ_RS07445	0.48	+0.4
1,368,585	+		MMJJ_RS07445	0.48	+0.8
1,368,596	-		MMJJ_RS07445	0.50	-0.1
1,368,597	+		MMJJ_RS07445	0.50	+0.2
1,368,603	+		MMJJ_RS07445	0.51	+0.5
1,368,613	-		MMJJ_RS07445	0.52	-0.6
1,368,613	-		MMJJ_RS07445	0.52	-1.5
1,368,613	-		MMJJ_RS07445	0.52	-0.3
1,368,622	-		MMJJ_RS07445	0.53	+0.3
1,368,682	-		MMJJ_RS07445	0.61	-0.7
1,368,682	-		MMJJ_RS07445	0.61	+0.4
1,368,686	+		MMJJ_RS07445	0.61	+0.5
1,368,689	+		MMJJ_RS07445	0.61	+1.0
1,368,702	-		MMJJ_RS07445	0.63	-0.3
1,368,703	+		MMJJ_RS07445	0.63	+0.5
1,368,703	+		MMJJ_RS07445	0.63	+0.6
1,368,703	+		MMJJ_RS07445	0.63	+1.1
1,368,706	+		MMJJ_RS07445	0.64	-0.1
1,368,706	+		MMJJ_RS07445	0.64	-0.7
1,368,706	+		MMJJ_RS07445	0.64	+0.5
1,368,769	-		MMJJ_RS07445	0.71	+0.7
1,368,835	-		MMJJ_RS07445	0.80	+0.9
1,368,840	+		MMJJ_RS07445	0.80	-0.2
1,368,859	-		MMJJ_RS07445	0.83	-0.4
1,368,971	-				-0.4
1,368,974	-				+0.6
1,368,975	+				+0.9
1,368,976	-				-0.4
1,368,976	-				+0.1
1,368,976	-				+0.2
1,368,997	+				-1.1
1,368,997	+				+0.8
1,369,002	-				-0.1
1,369,002	-				+0.3
1,369,002	-				-4.6
1,369,002	-				-0.3
1,369,003	+				-0.5
1,369,003	+				-0.1
1,369,005	+				-0.5
1,369,005	+				+0.1
1,369,015	+				+0.2
1,369,016	-				+1.0
1,369,020	+				+0.8
1,369,024	-				+1.7
1,369,025	+				+0.4
1,369,025	+				+0.1
1,369,025	+				-0.6
1,369,025	+				-0.0
1,369,035	+		MMJJ_RS07450	0.11	+0.6
1,369,040	-		MMJJ_RS07450	0.14	+0.8
1,369,041	+		MMJJ_RS07450	0.14	+0.5
1,369,067	+		MMJJ_RS07450	0.28	+1.5
1,369,067	+		MMJJ_RS07450	0.28	-0.0
1,369,110	+		MMJJ_RS07450	0.50	-1.1
1,369,110	+		MMJJ_RS07450	0.50	+0.4
1,369,158	+		MMJJ_RS07450	0.74	+0.5
1,369,158	+		MMJJ_RS07450	0.74	+0.1
1,369,160	+		MMJJ_RS07450	0.75	+0.9
1,369,160	+		MMJJ_RS07450	0.75	+0.2
1,369,162	-		MMJJ_RS07450	0.76	+0.1
1,369,197	-				+0.5
1,369,235	+				+0.6
1,369,235	+				+1.2
1,369,336	-				+0.1
1,369,336	-				+0.0
1,369,345	+				+0.1
1,369,458	-		MMJJ_RS07455	0.25	-3.1
1,369,488	-		MMJJ_RS07455	0.32	+2.1
1,369,489	+				+0.7
1,369,493	+		MMJJ_RS07455	0.33	-0.7
1,369,528	-		MMJJ_RS07455	0.40	-2.9
1,369,529	+		MMJJ_RS07455	0.40	+1.2
1,369,529	+		MMJJ_RS07455	0.40	-0.5
1,369,529	+		MMJJ_RS07455	0.40	-2.3
1,369,537	+		MMJJ_RS07455	0.42	-2.7
1,369,570	+		MMJJ_RS07455	0.49	+0.4
1,369,570	+		MMJJ_RS07455	0.49	-0.9
1,369,654	+		MMJJ_RS07455	0.66	-1.7
1,369,654	+		MMJJ_RS07455	0.66	+0.3
1,369,657	-		MMJJ_RS07455	0.67	-0.4
1,369,658	+		MMJJ_RS07455	0.67	-1.2
1,369,661	+		MMJJ_RS07455	0.67	-0.9
1,369,686	-		MMJJ_RS07455	0.73	-0.5
1,369,731	-		MMJJ_RS07455	0.82	-2.6
1,369,785	-				-1.2
1,369,786	+				+0.7
1,369,817	-				-2.4
1,369,818	+				-3.8
1,369,822	+				-3.2
1,369,847	-				+1.2
1,369,848	+				-1.8
1,369,851	-				+1.3
1,369,852	+				-3.5
1,369,859	-				-2.3
1,369,859	-				-0.5
1,369,859	-				-2.0
1,369,859	-				+1.6
1,369,859	-				-0.9
1,369,859	-				+0.4
1,369,859	-				-1.3
1,369,860	+				+0.2
1,369,860	+				+0.4
1,369,860	+				-2.6
1,369,860	+				+0.9
1,369,862	+				-2.5
1,369,862	+				-1.4
1,369,865	-				-3.5
1,369,866	+				-2.3
1,369,866	+				-1.6
1,369,873	-				-0.5
1,369,874	+				+0.4
1,369,874	+				-0.5
1,369,874	+				+4.4
1,369,883	+				-1.7
1,369,889	+				+2.3
1,369,889	+				-0.1
1,369,889	+				-1.6