Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS07270

Experiment: McCas-formate glass attached

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMJJ_RS07260 and MMJJ_RS07265 are separated by 87 nucleotidesMMJJ_RS07265 and MMJJ_RS07270 overlap by 1 nucleotidesMMJJ_RS07270 and MMJJ_RS07275 are separated by 118 nucleotides MMJJ_RS07260: MMJJ_RS07260 - PspC domain-containing protein, at 1,330,485 to 1,330,727 _RS07260 MMJJ_RS07265: MMJJ_RS07265 - tRNA (adenine-N1)-methyltransferase, at 1,330,815 to 1,331,693 _RS07265 MMJJ_RS07270: MMJJ_RS07270 - ribonuclease HII, at 1,331,693 to 1,332,421 _RS07270 MMJJ_RS07275: MMJJ_RS07275 - formate--phosphoribosylaminoimidazolecarboxamide ligase, at 1,332,540 to 1,333,625 _RS07275 Position (kb) 1331 1332 1333Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1330.727 kb on - strandat 1330.744 kb on - strandat 1330.745 kb on + strandat 1330.751 kb on - strandat 1330.751 kb on - strandat 1330.752 kb on + strandat 1330.752 kb on + strandat 1330.765 kb on + strandat 1330.769 kb on - strandat 1330.769 kb on - strandat 1330.769 kb on - strandat 1330.770 kb on + strandat 1330.770 kb on + strandat 1330.770 kb on + strandat 1330.770 kb on + strandat 1330.783 kb on + strandat 1330.788 kb on - strandat 1330.864 kb on - strandat 1330.864 kb on - strandat 1330.865 kb on + strandat 1330.870 kb on + strandat 1330.901 kb on - strandat 1330.902 kb on + strandat 1330.929 kb on + strand, within MMJJ_RS07265at 1330.929 kb on + strand, within MMJJ_RS07265at 1330.929 kb on + strand, within MMJJ_RS07265at 1330.971 kb on - strand, within MMJJ_RS07265at 1330.971 kb on - strand, within MMJJ_RS07265at 1330.971 kb on - strand, within MMJJ_RS07265at 1330.971 kb on - strand, within MMJJ_RS07265at 1330.972 kb on + strand, within MMJJ_RS07265at 1330.977 kb on + strand, within MMJJ_RS07265at 1330.991 kb on - strand, within MMJJ_RS07265at 1330.991 kb on - strand, within MMJJ_RS07265at 1330.992 kb on + strand, within MMJJ_RS07265at 1330.998 kb on - strand, within MMJJ_RS07265at 1331.046 kb on - strand, within MMJJ_RS07265at 1331.046 kb on - strand, within MMJJ_RS07265at 1331.046 kb on - strand, within MMJJ_RS07265at 1331.046 kb on - strand, within MMJJ_RS07265at 1331.047 kb on + strand, within MMJJ_RS07265at 1331.050 kb on - strand, within MMJJ_RS07265at 1331.050 kb on - strand, within MMJJ_RS07265at 1331.055 kb on - strand, within MMJJ_RS07265at 1331.056 kb on + strand, within MMJJ_RS07265at 1331.056 kb on + strand, within MMJJ_RS07265at 1331.056 kb on + strand, within MMJJ_RS07265at 1331.059 kb on - strand, within MMJJ_RS07265at 1331.059 kb on - strand, within MMJJ_RS07265at 1331.059 kb on - strand, within MMJJ_RS07265at 1331.059 kb on - strand, within MMJJ_RS07265at 1331.059 kb on - strand, within MMJJ_RS07265at 1331.059 kb on - strand, within MMJJ_RS07265at 1331.059 kb on - strand, within MMJJ_RS07265at 1331.059 kb on - strand, within MMJJ_RS07265at 1331.059 kb on - strand, within MMJJ_RS07265at 1331.059 kb on - strand, within MMJJ_RS07265at 1331.059 kb on - strand, within MMJJ_RS07265at 1331.060 kb on + strand, within MMJJ_RS07265at 1331.060 kb on + strandat 1331.060 kb on + strand, within MMJJ_RS07265at 1331.061 kb on - strand, within MMJJ_RS07265at 1331.062 kb on + strand, within MMJJ_RS07265at 1331.062 kb on + strand, within MMJJ_RS07265at 1331.084 kb on - strand, within MMJJ_RS07265at 1331.153 kb on - strand, within MMJJ_RS07265at 1331.207 kb on + strand, within MMJJ_RS07265at 1331.350 kb on + strand, within MMJJ_RS07265at 1331.380 kb on + strand, within MMJJ_RS07265at 1331.408 kb on - strand, within MMJJ_RS07265at 1331.511 kb on + strand, within MMJJ_RS07265at 1331.559 kb on + strand, within MMJJ_RS07265at 1331.568 kb on - strand, within MMJJ_RS07265at 1331.596 kb on + strand, within MMJJ_RS07265at 1331.643 kb on - strandat 1331.644 kb on + strandat 1331.670 kb on - strandat 1331.671 kb on + strandat 1331.671 kb on + strandat 1331.671 kb on + strandat 1331.672 kb on - strandat 1331.672 kb on - strandat 1331.694 kb on - strandat 1331.711 kb on - strandat 1331.712 kb on + strandat 1331.890 kb on - strand, within MMJJ_RS07270at 1331.900 kb on - strand, within MMJJ_RS07270at 1331.986 kb on - strand, within MMJJ_RS07270at 1332.029 kb on + strand, within MMJJ_RS07270at 1332.053 kb on - strand, within MMJJ_RS07270at 1332.053 kb on - strand, within MMJJ_RS07270at 1332.055 kb on - strand, within MMJJ_RS07270at 1332.055 kb on - strand, within MMJJ_RS07270at 1332.055 kb on - strand, within MMJJ_RS07270at 1332.056 kb on + strand, within MMJJ_RS07270at 1332.056 kb on + strand, within MMJJ_RS07270at 1332.110 kb on - strand, within MMJJ_RS07270at 1332.119 kb on - strand, within MMJJ_RS07270at 1332.125 kb on - strand, within MMJJ_RS07270at 1332.127 kb on - strand, within MMJJ_RS07270at 1332.127 kb on - strand, within MMJJ_RS07270at 1332.185 kb on - strand, within MMJJ_RS07270at 1332.185 kb on - strand, within MMJJ_RS07270at 1332.203 kb on + strand, within MMJJ_RS07270at 1332.204 kb on - strand, within MMJJ_RS07270at 1332.205 kb on + strand, within MMJJ_RS07270at 1332.268 kb on - strand, within MMJJ_RS07270at 1332.268 kb on - strand, within MMJJ_RS07270at 1332.268 kb on - strand, within MMJJ_RS07270at 1332.268 kb on - strand, within MMJJ_RS07270at 1332.268 kb on - strand, within MMJJ_RS07270at 1332.269 kb on + strand, within MMJJ_RS07270at 1332.269 kb on + strand, within MMJJ_RS07270at 1332.269 kb on + strand, within MMJJ_RS07270at 1332.273 kb on + strand, within MMJJ_RS07270at 1332.273 kb on + strand, within MMJJ_RS07270at 1332.273 kb on + strand, within MMJJ_RS07270at 1332.353 kb on - strandat 1332.353 kb on - strandat 1332.396 kb on + strandat 1332.400 kb on - strandat 1332.400 kb on - strandat 1332.403 kb on - strandat 1332.422 kb on - strandat 1332.423 kb on + strandat 1332.423 kb on + strandat 1332.424 kb on - strandat 1332.424 kb on - strandat 1332.425 kb on + strandat 1332.436 kb on - strandat 1332.437 kb on + strandat 1332.440 kb on + strandat 1332.452 kb on - strandat 1332.452 kb on - strandat 1332.453 kb on + strandat 1332.453 kb on + strandat 1332.454 kb on - strandat 1332.475 kb on - strandat 1332.696 kb on + strand, within MMJJ_RS07275at 1332.735 kb on - strand, within MMJJ_RS07275at 1332.736 kb on + strand, within MMJJ_RS07275at 1333.205 kb on + strand, within MMJJ_RS07275at 1333.217 kb on - strand, within MMJJ_RS07275at 1333.324 kb on - strand, within MMJJ_RS07275

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction McCas-formate glass attached
remove
1,330,727 - +0.2
1,330,744 - -2.5
1,330,745 + -0.0
1,330,751 - +1.0
1,330,751 - -2.4
1,330,752 + +0.9
1,330,752 + +0.1
1,330,765 + +0.4
1,330,769 - -0.4
1,330,769 - -1.8
1,330,769 - -2.7
1,330,770 + -1.0
1,330,770 + +0.8
1,330,770 + +0.1
1,330,770 + +0.1
1,330,783 + +0.4
1,330,788 - +0.2
1,330,864 - -0.1
1,330,864 - +0.4
1,330,865 + -3.7
1,330,870 + -0.3
1,330,901 - +0.4
1,330,902 + +0.2
1,330,929 + MMJJ_RS07265 0.13 -0.6
1,330,929 + MMJJ_RS07265 0.13 +0.1
1,330,929 + MMJJ_RS07265 0.13 -1.2
1,330,971 - MMJJ_RS07265 0.18 -0.5
1,330,971 - MMJJ_RS07265 0.18 -3.5
1,330,971 - MMJJ_RS07265 0.18 +0.6
1,330,971 - MMJJ_RS07265 0.18 -0.8
1,330,972 + MMJJ_RS07265 0.18 +0.9
1,330,977 + MMJJ_RS07265 0.18 -3.2
1,330,991 - MMJJ_RS07265 0.20 -2.0
1,330,991 - MMJJ_RS07265 0.20 -1.3
1,330,992 + MMJJ_RS07265 0.20 +0.4
1,330,998 - MMJJ_RS07265 0.21 -2.7
1,331,046 - MMJJ_RS07265 0.26 -1.8
1,331,046 - MMJJ_RS07265 0.26 +0.3
1,331,046 - MMJJ_RS07265 0.26 +0.4
1,331,046 - MMJJ_RS07265 0.26 -2.1
1,331,047 + MMJJ_RS07265 0.26 -1.4
1,331,050 - MMJJ_RS07265 0.27 -3.8
1,331,050 - MMJJ_RS07265 0.27 -3.2
1,331,055 - MMJJ_RS07265 0.27 +0.8
1,331,056 + MMJJ_RS07265 0.27 +1.0
1,331,056 + MMJJ_RS07265 0.27 -0.1
1,331,056 + MMJJ_RS07265 0.27 -2.9
1,331,059 - MMJJ_RS07265 0.28 -1.8
1,331,059 - MMJJ_RS07265 0.28 -2.6
1,331,059 - MMJJ_RS07265 0.28 +1.0
1,331,059 - MMJJ_RS07265 0.28 -3.3
1,331,059 - MMJJ_RS07265 0.28 +0.7
1,331,059 - MMJJ_RS07265 0.28 -2.9
1,331,059 - MMJJ_RS07265 0.28 -0.4
1,331,059 - MMJJ_RS07265 0.28 +1.3
1,331,059 - MMJJ_RS07265 0.28 -0.8
1,331,059 - MMJJ_RS07265 0.28 +0.4
1,331,059 - MMJJ_RS07265 0.28 +3.2
1,331,060 + MMJJ_RS07265 0.28 +1.5
1,331,060 + -0.7
1,331,060 + MMJJ_RS07265 0.28 -1.5
1,331,061 - MMJJ_RS07265 0.28 -2.1
1,331,062 + MMJJ_RS07265 0.28 -2.2
1,331,062 + MMJJ_RS07265 0.28 -4.1
1,331,084 - MMJJ_RS07265 0.31 -1.5
1,331,153 - MMJJ_RS07265 0.38 -1.2
1,331,207 + MMJJ_RS07265 0.45 -1.1
1,331,350 + MMJJ_RS07265 0.61 +0.0
1,331,380 + MMJJ_RS07265 0.64 -1.4
1,331,408 - MMJJ_RS07265 0.67 -1.0
1,331,511 + MMJJ_RS07265 0.79 -0.1
1,331,559 + MMJJ_RS07265 0.85 -1.5
1,331,568 - MMJJ_RS07265 0.86 +1.2
1,331,596 + MMJJ_RS07265 0.89 -2.6
1,331,643 - -1.8
1,331,644 + +0.2
1,331,670 - -2.1
1,331,671 + -2.8
1,331,671 + +0.4
1,331,671 + -3.2
1,331,672 - -3.3
1,331,672 - -1.5
1,331,694 - +1.3
1,331,711 - +0.5
1,331,712 + +2.0
1,331,890 - MMJJ_RS07270 0.27 +0.3
1,331,900 - MMJJ_RS07270 0.28 -0.5
1,331,986 - MMJJ_RS07270 0.40 +0.1
1,332,029 + MMJJ_RS07270 0.46 +0.4
1,332,053 - MMJJ_RS07270 0.49 -0.4
1,332,053 - MMJJ_RS07270 0.49 -0.1
1,332,055 - MMJJ_RS07270 0.50 +0.0
1,332,055 - MMJJ_RS07270 0.50 +0.6
1,332,055 - MMJJ_RS07270 0.50 +0.8
1,332,056 + MMJJ_RS07270 0.50 +0.7
1,332,056 + MMJJ_RS07270 0.50 +0.6
1,332,110 - MMJJ_RS07270 0.57 -0.1
1,332,119 - MMJJ_RS07270 0.58 +1.2
1,332,125 - MMJJ_RS07270 0.59 -1.4
1,332,127 - MMJJ_RS07270 0.60 +0.3
1,332,127 - MMJJ_RS07270 0.60 +0.4
1,332,185 - MMJJ_RS07270 0.67 +1.2
1,332,185 - MMJJ_RS07270 0.67 -2.3
1,332,203 + MMJJ_RS07270 0.70 +0.5
1,332,204 - MMJJ_RS07270 0.70 +0.5
1,332,205 + MMJJ_RS07270 0.70 +0.2
1,332,268 - MMJJ_RS07270 0.79 -2.9
1,332,268 - MMJJ_RS07270 0.79 -0.0
1,332,268 - MMJJ_RS07270 0.79 +0.9
1,332,268 - MMJJ_RS07270 0.79 +0.6
1,332,268 - MMJJ_RS07270 0.79 -0.5
1,332,269 + MMJJ_RS07270 0.79 +1.4
1,332,269 + MMJJ_RS07270 0.79 +1.1
1,332,269 + MMJJ_RS07270 0.79 -0.1
1,332,273 + MMJJ_RS07270 0.80 -0.3
1,332,273 + MMJJ_RS07270 0.80 -0.5
1,332,273 + MMJJ_RS07270 0.80 +0.7
1,332,353 - -0.3
1,332,353 - -1.2
1,332,396 + -1.3
1,332,400 - +0.7
1,332,400 - -0.5
1,332,403 - -1.8
1,332,422 - +0.5
1,332,423 + +0.4
1,332,423 + +1.4
1,332,424 - +0.7
1,332,424 - -2.8
1,332,425 + -1.0
1,332,436 - -2.7
1,332,437 + +1.1
1,332,440 + +0.1
1,332,452 - +0.6
1,332,452 - +0.1
1,332,453 + +0.6
1,332,453 + +0.7
1,332,454 - -0.1
1,332,475 - -0.5
1,332,696 + MMJJ_RS07275 0.14 -0.5
1,332,735 - MMJJ_RS07275 0.18 -1.5
1,332,736 + MMJJ_RS07275 0.18 -1.6
1,333,205 + MMJJ_RS07275 0.61 -0.7
1,333,217 - MMJJ_RS07275 0.62 +1.3
1,333,324 - MMJJ_RS07275 0.72 +2.4

Or see this region's nucleotide sequence