Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS07240

Experiment: McCas-formate glass attached

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas-formate glass attached
1,324,828	-		MMJJ_RS07235	0.37	-1.1
1,324,879	-		MMJJ_RS07235	0.42	+0.7
1,324,880	+		MMJJ_RS07235	0.42	-0.6
1,324,880	+		MMJJ_RS07235	0.42	-0.0
1,324,882	-		MMJJ_RS07235	0.42	-0.9
1,324,882	-		MMJJ_RS07235	0.42	+0.8
1,324,882	-		MMJJ_RS07235	0.42	-0.6
1,324,896	-		MMJJ_RS07235	0.43	+0.1
1,324,896	-		MMJJ_RS07235	0.43	+1.0
1,324,905	-		MMJJ_RS07235	0.44	+0.5
1,324,906	+		MMJJ_RS07235	0.44	-1.4
1,324,923	+		MMJJ_RS07235	0.45	-3.1
1,324,952	-		MMJJ_RS07235	0.47	+0.8
1,324,953	+		MMJJ_RS07235	0.47	-0.3
1,324,961	+		MMJJ_RS07235	0.48	+0.7
1,324,976	-		MMJJ_RS07235	0.49	+0.9
1,324,976	-		MMJJ_RS07235	0.49	+0.3
1,324,980	-		MMJJ_RS07235	0.50	+0.7
1,324,981	+		MMJJ_RS07235	0.50	-0.5
1,325,004	-		MMJJ_RS07235	0.52	+1.3
1,325,004	-		MMJJ_RS07235	0.52	-0.8
1,325,004	-		MMJJ_RS07235	0.52	-0.3
1,325,005	+		MMJJ_RS07235	0.52	+0.7
1,325,005	+		MMJJ_RS07235	0.52	+1.7
1,325,005	+		MMJJ_RS07235	0.52	-0.1
1,325,031	-		MMJJ_RS07235	0.54	+0.1
1,325,038	+		MMJJ_RS07235	0.54	-0.9
1,325,048	-		MMJJ_RS07235	0.55	-1.9
1,325,049	+		MMJJ_RS07235	0.55	+0.2
1,325,049	+		MMJJ_RS07235	0.55	-1.6
1,325,049	+		MMJJ_RS07235	0.55	-4.3
1,325,063	+		MMJJ_RS07235	0.56	+0.5
1,325,070	+		MMJJ_RS07235	0.57	+0.1
1,325,077	-		MMJJ_RS07235	0.57	+0.4
1,325,077	-		MMJJ_RS07235	0.57	+0.5
1,325,077	-		MMJJ_RS07235	0.57	+0.1
1,325,078	+		MMJJ_RS07235	0.58	-0.4
1,325,078	+		MMJJ_RS07235	0.58	+0.0
1,325,078	+				+5.2
1,325,078	+		MMJJ_RS07235	0.58	-0.1
1,325,080	-		MMJJ_RS07235	0.58	-0.4
1,325,166	+		MMJJ_RS07235	0.65	-2.1
1,325,172	-		MMJJ_RS07235	0.65	+0.9
1,325,172	-		MMJJ_RS07235	0.65	+1.0
1,325,172	-		MMJJ_RS07235	0.65	+1.1
1,325,173	+		MMJJ_RS07235	0.65	+0.2
1,325,229	-		MMJJ_RS07235	0.70	+0.2
1,325,266	+		MMJJ_RS07235	0.73	-0.3
1,325,266	+		MMJJ_RS07235	0.73	+0.2
1,325,283	-		MMJJ_RS07235	0.74	-0.9
1,325,283	-		MMJJ_RS07235	0.74	+0.2
1,325,303	-		MMJJ_RS07235	0.76	+0.4
1,325,303	-		MMJJ_RS07235	0.76	-2.1
1,325,304	+		MMJJ_RS07235	0.76	+0.6
1,325,304	+		MMJJ_RS07235	0.76	+0.2
1,325,316	-		MMJJ_RS07235	0.77	-2.0
1,325,336	-		MMJJ_RS07235	0.78	+1.7
1,325,363	-		MMJJ_RS07235	0.80	-1.0
1,325,412	-		MMJJ_RS07235	0.84	+0.2
1,325,412	-		MMJJ_RS07235	0.84	-0.5
1,325,412	-		MMJJ_RS07235	0.84	-2.8
1,325,412	-		MMJJ_RS07235	0.84	+0.6
1,325,413	+		MMJJ_RS07235	0.84	+0.9
1,325,413	+		MMJJ_RS07235	0.84	-1.4
1,325,413	+		MMJJ_RS07235	0.84	-0.0
1,325,414	-		MMJJ_RS07235	0.84	+0.8
1,325,414	-		MMJJ_RS07235	0.84	-0.2
1,325,414	-		MMJJ_RS07235	0.84	-1.5
1,325,415	+		MMJJ_RS07235	0.85	-0.5
1,325,415	+		MMJJ_RS07235	0.85	-0.1
1,325,415	+		MMJJ_RS07235	0.85	-2.7
1,325,415	+		MMJJ_RS07235	0.85	+0.1
1,325,439	+		MMJJ_RS07235	0.87	-2.0
1,325,439	+		MMJJ_RS07235	0.87	-0.9
1,325,498	-				+1.1
1,325,498	-				+0.1
1,325,520	-				+0.3
1,325,520	-				-0.6
1,325,520	-				+0.4
1,325,520	-				+0.5
1,325,520	-				+1.5
1,325,521	+				-0.6
1,325,538	-				-0.2
1,325,551	+				+0.2
1,325,556	+				-1.1
1,325,556	+				+0.7
1,325,573	-				+0.8
1,325,573	-				-0.6
1,325,579	-				-3.4
1,325,580	+				-0.7
1,325,592	-				-1.4
1,325,609	-				+0.9
1,325,629	+				+0.4
1,325,634	-				+0.5
1,325,635	+				+0.3
1,325,635	+				+0.5
1,325,662	-				+0.4
1,325,663	+				-0.2
1,325,673	+				+0.9
1,325,703	+				+0.7
1,325,703	+				-0.6
1,325,711	+				+1.5
1,325,752	-				+0.3
1,325,758	+				+0.2
1,325,769	-				+1.0
1,325,812	+				+1.1
1,325,812	+				+0.3
1,325,852	-				+0.8
1,325,917	-				+0.0
1,325,918	+				+1.1
1,325,918	+				-0.8
1,325,935	+				-0.9
1,325,945	-				+0.2
1,325,945	-				+0.8
1,325,946	+				-0.9
1,325,970	+		MMJJ_RS07240	0.12	+0.3
1,325,970	+		MMJJ_RS07240	0.12	+0.2
1,325,975	-		MMJJ_RS07240	0.12	+1.2
1,325,976	+		MMJJ_RS07240	0.12	+1.6
1,325,990	+		MMJJ_RS07240	0.13	+1.7
1,325,990	+		MMJJ_RS07240	0.13	+0.8
1,326,125	-		MMJJ_RS07240	0.24	+1.0
1,326,125	-		MMJJ_RS07240	0.24	+1.0
1,326,126	+		MMJJ_RS07240	0.24	+0.4
1,326,126	+		MMJJ_RS07240	0.24	-0.1
1,326,126	+		MMJJ_RS07240	0.24	+1.9
1,326,131	-		MMJJ_RS07240	0.24	+1.0
1,326,160	-		MMJJ_RS07240	0.27	+0.9
1,326,161	+		MMJJ_RS07240	0.27	+0.6
1,326,169	+		MMJJ_RS07240	0.27	+0.8
1,326,204	+		MMJJ_RS07240	0.30	-1.0
1,326,209	-		MMJJ_RS07240	0.30	-1.5
1,326,209	-		MMJJ_RS07240	0.30	-2.9
1,326,209	-		MMJJ_RS07240	0.30	+0.5
1,326,209	-		MMJJ_RS07240	0.30	-0.1
1,326,210	+		MMJJ_RS07240	0.30	+0.6
1,326,210	+		MMJJ_RS07240	0.30	+0.8
1,326,210	+		MMJJ_RS07240	0.30	-0.7
1,326,247	+		MMJJ_RS07240	0.33	-0.4
1,326,247	+		MMJJ_RS07240	0.33	-3.6
1,326,325	-		MMJJ_RS07240	0.40	+0.7
1,326,325	-		MMJJ_RS07240	0.40	+0.8
1,326,325	-		MMJJ_RS07240	0.40	+0.0
1,326,325	-		MMJJ_RS07240	0.40	+0.8
1,326,326	+		MMJJ_RS07240	0.40	+1.1
1,326,326	+		MMJJ_RS07240	0.40	+0.8
1,326,326	+		MMJJ_RS07240	0.40	-0.3
1,326,326	+		MMJJ_RS07240	0.40	+0.2
1,326,361	-		MMJJ_RS07240	0.42	+1.6
1,326,379	+		MMJJ_RS07240	0.44	+1.2
1,326,397	-		MMJJ_RS07240	0.45	-1.2
1,326,397	-		MMJJ_RS07240	0.45	+0.6
1,326,397	-		MMJJ_RS07240	0.45	-1.0
1,326,397	-		MMJJ_RS07240	0.45	+1.0
1,326,397	-		MMJJ_RS07240	0.45	-0.8
1,326,397	-		MMJJ_RS07240	0.45	-0.9
1,326,398	+		MMJJ_RS07240	0.45	+0.9
1,326,398	+		MMJJ_RS07240	0.45	+0.3
1,326,398	+		MMJJ_RS07240	0.45	+0.0
1,326,398	+		MMJJ_RS07240	0.45	-0.8
1,326,402	+		MMJJ_RS07240	0.46	+1.0
1,326,402	+		MMJJ_RS07240	0.46	+0.4
1,326,453	+		MMJJ_RS07240	0.50	+0.4
1,326,531	-		MMJJ_RS07240	0.56	+0.2
1,326,531	-		MMJJ_RS07240	0.56	+0.8
1,326,531	-		MMJJ_RS07240	0.56	-0.3
1,326,532	+		MMJJ_RS07240	0.56	+0.1
1,326,532	+		MMJJ_RS07240	0.56	+0.1
1,326,532	+		MMJJ_RS07240	0.56	+0.9
1,326,533	-		MMJJ_RS07240	0.56	+0.7
1,326,533	-		MMJJ_RS07240	0.56	+0.9
1,326,534	+		MMJJ_RS07240	0.56	+1.0
1,326,534	+		MMJJ_RS07240	0.56	+0.8
1,326,537	-		MMJJ_RS07240	0.56	-0.4
1,326,537	-		MMJJ_RS07240	0.56	+1.3
1,326,538	+		MMJJ_RS07240	0.56	+1.1
1,326,538	+		MMJJ_RS07240	0.56	+1.2
1,326,538	+		MMJJ_RS07240	0.56	+0.8
1,326,538	+		MMJJ_RS07240	0.56	+1.1
1,326,551	+		MMJJ_RS07240	0.57	+0.3
1,326,567	-		MMJJ_RS07240	0.59	-4.8
1,326,568	+		MMJJ_RS07240	0.59	-0.0
1,326,568	+		MMJJ_RS07240	0.59	+0.4
1,326,632	-				-1.3
1,326,633	+		MMJJ_RS07240	0.64	+0.9
1,326,633	+		MMJJ_RS07240	0.64	+0.6
1,326,641	-		MMJJ_RS07240	0.64	+0.4
1,326,641	-		MMJJ_RS07240	0.64	+0.9
1,326,642	+		MMJJ_RS07240	0.65	+0.3
1,326,643	-		MMJJ_RS07240	0.65	-0.4
1,326,643	-		MMJJ_RS07240	0.65	+0.5
1,326,643	-		MMJJ_RS07240	0.65	-0.7
1,326,643	-		MMJJ_RS07240	0.65	+0.7
1,326,644	+		MMJJ_RS07240	0.65	+0.4
1,326,644	+		MMJJ_RS07240	0.65	+1.0
1,326,644	+		MMJJ_RS07240	0.65	+1.1
1,326,644	+		MMJJ_RS07240	0.65	-2.3
1,326,644	+		MMJJ_RS07240	0.65	+0.5
1,326,645	-				-0.3
1,326,646	+		MMJJ_RS07240	0.65	+0.8
1,326,646	+		MMJJ_RS07240	0.65	-0.9
1,326,648	-		MMJJ_RS07240	0.65	+0.6
1,326,670	+		MMJJ_RS07240	0.67	-0.1
1,326,670	+		MMJJ_RS07240	0.67	+0.9
1,326,670	+		MMJJ_RS07240	0.67	+0.3
1,326,673	-		MMJJ_RS07240	0.67	+0.3
1,326,673	-		MMJJ_RS07240	0.67	-0.4
1,326,674	+		MMJJ_RS07240	0.67	+0.9
1,326,691	+		MMJJ_RS07240	0.68	+0.2
1,326,695	-		MMJJ_RS07240	0.69	+0.3
1,326,695	-		MMJJ_RS07240	0.69	+0.7
1,326,696	+		MMJJ_RS07240	0.69	+2.0
1,326,696	+		MMJJ_RS07240	0.69	-1.1
1,326,709	-		MMJJ_RS07240	0.70	+0.9
1,326,709	-		MMJJ_RS07240	0.70	+1.2
1,326,722	-		MMJJ_RS07240	0.71	+0.6
1,326,734	-		MMJJ_RS07240	0.72	-0.2
1,326,753	+		MMJJ_RS07240	0.73	-0.5
1,326,754	-		MMJJ_RS07240	0.73	+0.8
1,326,754	-		MMJJ_RS07240	0.73	+0.8
1,326,755	+		MMJJ_RS07240	0.73	+0.5
1,326,755	+		MMJJ_RS07240	0.73	-1.0
1,326,772	+		MMJJ_RS07240	0.75	-0.3
1,326,772	+		MMJJ_RS07240	0.75	-1.4
1,326,806	+		MMJJ_RS07240	0.77	+0.7
1,326,806	+		MMJJ_RS07240	0.77	+0.5
1,326,827	-		MMJJ_RS07240	0.79	-0.4
1,326,827	-		MMJJ_RS07240	0.79	+0.5
1,326,827	-		MMJJ_RS07240	0.79	+0.9
1,326,837	-		MMJJ_RS07240	0.80	+1.2
1,326,837	-		MMJJ_RS07240	0.80	+1.4
1,326,838	+		MMJJ_RS07240	0.80	-0.2
1,326,844	-		MMJJ_RS07240	0.80	+0.5
1,326,844	-		MMJJ_RS07240	0.80	-0.9
1,326,845	+		MMJJ_RS07240	0.81	-0.2
1,326,845	+		MMJJ_RS07240	0.81	+0.5
1,326,845	+		MMJJ_RS07240	0.81	+2.1
1,326,849	-		MMJJ_RS07240	0.81	-4.0
1,326,850	+		MMJJ_RS07240	0.81	-0.5
1,326,870	+		MMJJ_RS07240	0.83	+0.9
1,326,876	-		MMJJ_RS07240	0.83	-0.5
1,326,896	+		MMJJ_RS07240	0.85	+0.2
1,326,900	-		MMJJ_RS07240	0.85	-0.9
1,326,900	-		MMJJ_RS07240	0.85	+0.6
1,326,901	+		MMJJ_RS07240	0.85	+0.7
1,326,901	+		MMJJ_RS07240	0.85	+1.2
1,327,008	-				-3.0
1,327,012	+				+0.5
1,327,033	+				+0.0
1,327,092	-				+1.0
1,327,101	-				-0.7
1,327,102	+				-0.7
1,327,110	-				+0.5
1,327,110	-				+0.2
1,327,112	-				-0.3
1,327,113	+				+0.3
1,327,113	+				+0.0
1,327,141	-				-0.4
1,327,149	+				+1.0
1,327,149	+				+1.0
1,327,153	-				+0.1
1,327,274	+		MMJJ_RS07245	0.11	-3.1
1,327,367	+		MMJJ_RS07245	0.19	-0.7
1,327,425	+		MMJJ_RS07245	0.24	-2.9
1,327,452	+		MMJJ_RS07245	0.27	-2.0
1,327,516	+		MMJJ_RS07245	0.33	+2.4
1,327,518	-		MMJJ_RS07245	0.33	-1.2
1,327,519	+		MMJJ_RS07245	0.33	-2.3
1,327,519	+		MMJJ_RS07245	0.33	-0.7
1,327,542	-		MMJJ_RS07245	0.35	-1.9
1,327,600	+		MMJJ_RS07245	0.40	-0.9
1,327,908	+		MMJJ_RS07245	0.68	+0.2
1,327,949	-		MMJJ_RS07245	0.71	-3.6
1,328,009	-		MMJJ_RS07245	0.77	-2.0
1,328,013	-		MMJJ_RS07245	0.77	-2.6
1,328,079	+		MMJJ_RS07245	0.83	-0.7
1,328,088	+		MMJJ_RS07245	0.84	-2.3