Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS07230

Experiment: McCas-formate glass attached

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas-formate glass attached
1,322,736	+		MMJJ_RS07220	0.69	-2.1
1,322,747	-		MMJJ_RS07220	0.70	-0.2
1,322,762	+		MMJJ_RS07220	0.72	+0.1
1,322,768	-		MMJJ_RS07220	0.72	+0.5
1,322,768	-		MMJJ_RS07220	0.72	+0.7
1,322,768	-		MMJJ_RS07220	0.72	-0.9
1,322,769	+		MMJJ_RS07220	0.73	+1.1
1,322,769	+		MMJJ_RS07220	0.73	-0.2
1,322,773	-		MMJJ_RS07220	0.73	-1.8
1,322,774	+		MMJJ_RS07220	0.73	+1.2
1,322,775	-		MMJJ_RS07220	0.73	+0.5
1,322,776	+		MMJJ_RS07220	0.73	+0.4
1,322,779	-		MMJJ_RS07220	0.74	-1.3
1,322,815	-		MMJJ_RS07220	0.78	-0.3
1,322,864	-		MMJJ_RS07220	0.84	+0.3
1,322,865	+		MMJJ_RS07220	0.84	+2.5
1,322,902	+		MMJJ_RS07220	0.88	-0.9
1,322,979	+				-0.7
1,322,979	+				+0.5
1,322,980	-				+2.8
1,322,983	+				-0.1
1,323,003	-				-5.2
1,323,004	+				-1.1
1,323,004	+				-0.3
1,323,004	+				+0.6
1,323,004	+				-1.6
1,323,017	-				+1.3
1,323,027	+				+0.2
1,323,037	+				-0.4
1,323,053	-				+0.4
1,323,053	-				-0.7
1,323,145	-		MMJJ_RS07225	0.16	+0.1
1,323,145	-		MMJJ_RS07225	0.16	+0.5
1,323,146	+		MMJJ_RS07225	0.16	-0.2
1,323,149	-		MMJJ_RS07225	0.17	+0.0
1,323,149	-		MMJJ_RS07225	0.17	-0.3
1,323,150	+		MMJJ_RS07225	0.17	-2.3
1,323,150	+		MMJJ_RS07225	0.17	+0.1
1,323,150	+		MMJJ_RS07225	0.17	-4.0
1,323,160	-		MMJJ_RS07225	0.18	+0.6
1,323,194	+		MMJJ_RS07225	0.23	+0.6
1,323,213	+		MMJJ_RS07225	0.26	-0.1
1,323,218	-		MMJJ_RS07225	0.27	+0.2
1,323,278	-		MMJJ_RS07225	0.35	-1.2
1,323,279	+		MMJJ_RS07225	0.36	+1.2
1,323,279	+		MMJJ_RS07225	0.36	+0.8
1,323,283	+		MMJJ_RS07225	0.36	+0.5
1,323,323	-		MMJJ_RS07225	0.42	+1.3
1,323,442	-		MMJJ_RS07225	0.59	-0.0
1,323,442	-		MMJJ_RS07225	0.59	-0.6
1,323,479	-		MMJJ_RS07225	0.65	+0.9
1,323,480	+		MMJJ_RS07225	0.65	-1.1
1,323,548	+		MMJJ_RS07225	0.75	-1.9
1,323,548	+		MMJJ_RS07225	0.75	-1.1
1,323,563	-		MMJJ_RS07225	0.77	-0.9
1,323,563	-		MMJJ_RS07225	0.77	-0.3
1,323,563	-		MMJJ_RS07225	0.77	+1.0
1,323,564	+		MMJJ_RS07225	0.77	+0.4
1,323,564	+		MMJJ_RS07225	0.77	+0.1
1,323,569	-		MMJJ_RS07225	0.78	-0.2
1,323,570	+		MMJJ_RS07225	0.78	-0.6
1,323,617	-		MMJJ_RS07225	0.85	+1.2
1,323,623	-		MMJJ_RS07225	0.86	+0.4
1,323,624	+		MMJJ_RS07225	0.86	+0.7
1,323,641	-		MMJJ_RS07225	0.88	+0.8
1,323,642	+		MMJJ_RS07225	0.88	-0.6
1,323,674	-				+0.7
1,323,695	-				-0.1
1,323,695	-				+0.5
1,323,695	-				+1.3
1,323,696	+				-1.5
1,323,725	+				-0.2
1,323,737	-				+0.2
1,323,738	+				+0.1
1,323,824	+		MMJJ_RS07230	0.17	+0.7
1,323,824	+		MMJJ_RS07230	0.17	+1.9
1,323,826	-		MMJJ_RS07230	0.17	-1.6
1,323,826	-		MMJJ_RS07230	0.17	-0.6
1,323,845	-		MMJJ_RS07230	0.21	-1.6
1,323,845	-		MMJJ_RS07230	0.21	+0.5
1,323,846	+		MMJJ_RS07230	0.21	+0.0
1,323,871	+		MMJJ_RS07230	0.26	-3.7
1,323,898	+		MMJJ_RS07230	0.31	+0.8
1,323,901	-		MMJJ_RS07230	0.31	+0.2
1,323,902	+		MMJJ_RS07230	0.32	+0.3
1,323,909	+		MMJJ_RS07230	0.33	-1.2
1,323,909	+		MMJJ_RS07230	0.33	+0.4
1,323,909	+		MMJJ_RS07230	0.33	-0.0
1,323,915	-		MMJJ_RS07230	0.34	-0.8
1,323,981	-		MMJJ_RS07230	0.47	+0.4
1,323,981	-		MMJJ_RS07230	0.47	+0.7
1,323,981	-		MMJJ_RS07230	0.47	+0.2
1,323,982	+		MMJJ_RS07230	0.47	+1.1
1,323,982	+		MMJJ_RS07230	0.47	+0.1
1,323,982	+		MMJJ_RS07230	0.47	+0.2
1,323,986	+		MMJJ_RS07230	0.48	+1.2
1,323,990	-		MMJJ_RS07230	0.48	+0.2
1,323,991	+		MMJJ_RS07230	0.49	+1.2
1,324,033	-		MMJJ_RS07230	0.57	-4.0
1,324,141	-		MMJJ_RS07230	0.77	+0.2
1,324,173	-		MMJJ_RS07230	0.83	+0.8
1,324,174	+		MMJJ_RS07230	0.83	-0.1
1,324,197	-		MMJJ_RS07230	0.88	-5.6
1,324,219	+				+0.4
1,324,228	-				-0.9
1,324,236	+				-0.1
1,324,253	-				-0.3
1,324,287	+				+0.8
1,324,287	+				-0.5
1,324,298	+				-0.8
1,324,302	-				-0.6
1,324,327	+				+0.1
1,324,374	-				+0.6
1,324,422	+				-0.2
1,324,437	-				+0.3
1,324,438	+				+1.3
1,324,438	+				+0.9
1,324,444	-				-3.0
1,324,444	-				+0.6
1,324,454	-				+0.6
1,324,455	+				+0.3
1,324,469	+				+1.5
1,324,469	+				-0.5
1,324,473	+				+0.5
1,324,473	+				-2.4
1,324,473	+				+0.3
1,324,473	+				+0.4
1,324,540	-		MMJJ_RS07235	0.14	-0.7
1,324,540	-		MMJJ_RS07235	0.14	-0.3
1,324,541	+		MMJJ_RS07235	0.14	+0.2
1,324,639	-		MMJJ_RS07235	0.22	+0.7
1,324,639	-		MMJJ_RS07235	0.22	+0.2
1,324,639	-		MMJJ_RS07235	0.22	+1.0
1,324,646	-		MMJJ_RS07235	0.23	-0.2
1,324,647	+		MMJJ_RS07235	0.23	-0.9
1,324,647	+		MMJJ_RS07235	0.23	+1.7
1,324,647	+		MMJJ_RS07235	0.23	-1.0
1,324,650	-		MMJJ_RS07235	0.23	+0.7
1,324,650	-		MMJJ_RS07235	0.23	-0.3
1,324,651	+		MMJJ_RS07235	0.23	+1.3
1,324,659	-		MMJJ_RS07235	0.24	-1.3
1,324,659	-				-1.2
1,324,689	+		MMJJ_RS07235	0.26	+0.8
1,324,785	+		MMJJ_RS07235	0.34	+0.6
1,324,800	+		MMJJ_RS07235	0.35	+0.6
1,324,828	-		MMJJ_RS07235	0.37	-1.1
1,324,879	-		MMJJ_RS07235	0.42	+0.7
1,324,880	+		MMJJ_RS07235	0.42	-0.6
1,324,880	+		MMJJ_RS07235	0.42	-0.0
1,324,882	-		MMJJ_RS07235	0.42	-0.9
1,324,882	-		MMJJ_RS07235	0.42	+0.8
1,324,882	-		MMJJ_RS07235	0.42	-0.6
1,324,896	-		MMJJ_RS07235	0.43	+0.1
1,324,896	-		MMJJ_RS07235	0.43	+1.0
1,324,905	-		MMJJ_RS07235	0.44	+0.5
1,324,906	+		MMJJ_RS07235	0.44	-1.4
1,324,923	+		MMJJ_RS07235	0.45	-3.1
1,324,952	-		MMJJ_RS07235	0.47	+0.8
1,324,953	+		MMJJ_RS07235	0.47	-0.3
1,324,961	+		MMJJ_RS07235	0.48	+0.7
1,324,976	-		MMJJ_RS07235	0.49	+0.9
1,324,976	-		MMJJ_RS07235	0.49	+0.3
1,324,980	-		MMJJ_RS07235	0.50	+0.7
1,324,981	+		MMJJ_RS07235	0.50	-0.5
1,325,004	-		MMJJ_RS07235	0.52	+1.3
1,325,004	-		MMJJ_RS07235	0.52	-0.8
1,325,004	-		MMJJ_RS07235	0.52	-0.3
1,325,005	+		MMJJ_RS07235	0.52	+0.7
1,325,005	+		MMJJ_RS07235	0.52	+1.7
1,325,005	+		MMJJ_RS07235	0.52	-0.1
1,325,031	-		MMJJ_RS07235	0.54	+0.1
1,325,038	+		MMJJ_RS07235	0.54	-0.9
1,325,048	-		MMJJ_RS07235	0.55	-1.9
1,325,049	+		MMJJ_RS07235	0.55	+0.2
1,325,049	+		MMJJ_RS07235	0.55	-1.6
1,325,049	+		MMJJ_RS07235	0.55	-4.3
1,325,063	+		MMJJ_RS07235	0.56	+0.5
1,325,070	+		MMJJ_RS07235	0.57	+0.1
1,325,077	-		MMJJ_RS07235	0.57	+0.4
1,325,077	-		MMJJ_RS07235	0.57	+0.5
1,325,077	-		MMJJ_RS07235	0.57	+0.1
1,325,078	+		MMJJ_RS07235	0.58	-0.4
1,325,078	+		MMJJ_RS07235	0.58	+0.0
1,325,078	+				+5.2
1,325,078	+		MMJJ_RS07235	0.58	-0.1
1,325,080	-		MMJJ_RS07235	0.58	-0.4
1,325,166	+		MMJJ_RS07235	0.65	-2.1
1,325,172	-		MMJJ_RS07235	0.65	+0.9
1,325,172	-		MMJJ_RS07235	0.65	+1.0
1,325,172	-		MMJJ_RS07235	0.65	+1.1
1,325,173	+		MMJJ_RS07235	0.65	+0.2
1,325,229	-		MMJJ_RS07235	0.70	+0.2