Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS07200

Experiment: McCas-formate glass attached

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas-formate glass attached
1,317,701	+				+0.3
1,318,227	-				-0.1
1,318,228	+				-2.9
1,318,234	+				+0.5
1,318,267	+				+0.7
1,318,294	-				-0.7
1,318,295	+				+0.0
1,318,295	+				-1.2
1,318,299	-				+0.1
1,318,299	-				+0.2
1,318,299	-				+0.9
1,318,300	+				-0.2
1,318,300	+				+0.1
1,318,300	+				-1.0
1,318,330	-				+0.3
1,318,347	-				+0.5
1,318,347	-				+0.4
1,318,348	+				+0.4
1,318,349	-				+0.7
1,318,349	-				-0.3
1,318,352	-				+1.1
1,318,352	-				+0.6
1,318,352	-				-1.0
1,318,352	-				+0.2
1,318,352	-				+0.2
1,318,353	+				-0.5
1,318,353	+				-2.4
1,318,353	+				-2.7
1,318,355	-				+0.8
1,318,414	-		MMJJ_RS09360	0.26	+0.8
1,318,415	+		MMJJ_RS09360	0.26	-1.1
1,318,418	-		MMJJ_RS09360	0.28	+0.2
1,318,418	-		MMJJ_RS09360	0.28	-1.2
1,318,419	+		MMJJ_RS09360	0.29	+1.4
1,318,425	-		MMJJ_RS09360	0.32	-1.4
1,318,425	-		MMJJ_RS09360	0.32	+0.5
1,318,425	-		MMJJ_RS09360	0.32	-0.4
1,318,426	+		MMJJ_RS09360	0.33	-0.3
1,318,426	+		MMJJ_RS09360	0.33	+0.5
1,318,426	+		MMJJ_RS09360	0.33	+0.3
1,318,426	+		MMJJ_RS09360	0.33	-0.3
1,318,426	+		MMJJ_RS09360	0.33	+0.7
1,318,426	+		MMJJ_RS09360	0.33	+0.5
1,318,435	-		MMJJ_RS09360	0.38	-0.2
1,318,435	-		MMJJ_RS09360	0.38	-0.5
1,318,435	-		MMJJ_RS09360	0.38	-4.1
1,318,435	-		MMJJ_RS09360	0.38	+0.6
1,318,435	-		MMJJ_RS09360	0.38	-0.0
1,318,435	-		MMJJ_RS09360	0.38	+0.4
1,318,435	-		MMJJ_RS09360	0.38	-3.7
1,318,435	-		MMJJ_RS09360	0.38	-1.3
1,318,436	+		MMJJ_RS09360	0.39	-0.3
1,318,436	+		MMJJ_RS09360	0.39	+0.6
1,318,436	+		MMJJ_RS09360	0.39	+1.2
1,318,437	-		MMJJ_RS09360	0.39	-2.8
1,318,437	-		MMJJ_RS09360	0.39	+0.3
1,318,437	-		MMJJ_RS09360	0.39	+0.8
1,318,437	-		MMJJ_RS09360	0.39	+0.9
1,318,437	-		MMJJ_RS09360	0.39	-0.3
1,318,438	+		MMJJ_RS09360	0.40	+0.3
1,318,441	-		MMJJ_RS09360	0.42	-2.5
1,318,441	-		MMJJ_RS09360	0.42	-0.3
1,318,441	-				-0.9
1,318,442	+		MMJJ_RS09360	0.42	-0.1
1,318,484	+		MMJJ_RS09360	0.67	+0.3
1,318,497	-		MMJJ_RS09360	0.74	-1.8
1,318,498	+		MMJJ_RS09360	0.75	+0.8
1,318,519	-		MMJJ_RS09360	0.87	+0.3
1,318,530	-				+1.3
1,318,589	-				+1.5
1,318,589	-				-1.5
1,318,590	+				-0.3
1,318,592	-				-0.6
1,318,606	+				-0.8
1,318,619	-				+0.0
1,318,624	-				-1.5
1,318,624	-				-3.0
1,318,631	+				+1.4
1,318,643	-				+0.2
1,318,652	-				+0.3
1,318,653	+				-0.8
1,318,653	+				-2.3
1,318,653	+				-0.5
1,318,675	-				+0.6
1,318,676	+				+0.4
1,318,676	+				-0.1
1,318,681	-				+0.4
1,318,682	+				+1.0
1,318,698	+				-2.5
1,318,835	-		MMJJ_RS07200	0.16	+0.7
1,318,841	+		MMJJ_RS07200	0.17	-3.5
1,318,841	+		MMJJ_RS07200	0.17	+0.4
1,318,922	-		MMJJ_RS07200	0.24	+0.7
1,319,082	-		MMJJ_RS07200	0.38	+0.5
1,319,127	-		MMJJ_RS07200	0.42	+2.1
1,319,128	+		MMJJ_RS07200	0.42	+0.6
1,319,144	-		MMJJ_RS07200	0.43	+0.5
1,319,145	+		MMJJ_RS07200	0.43	+1.2
1,319,157	+		MMJJ_RS07200	0.44	-0.6
1,319,163	+		MMJJ_RS07200	0.45	+1.2
1,319,264	+		MMJJ_RS07200	0.54	+0.2
1,319,319	+		MMJJ_RS07200	0.58	+1.4
1,319,324	-		MMJJ_RS07200	0.59	-0.4
1,319,338	-		MMJJ_RS07200	0.60	+0.7
1,319,346	-		MMJJ_RS07200	0.61	+0.5
1,319,366	-		MMJJ_RS07200	0.62	+0.2
1,319,367	+		MMJJ_RS07200	0.63	+0.4
1,319,369	-		MMJJ_RS07200	0.63	+0.1
1,319,369	-		MMJJ_RS07200	0.63	+0.2
1,319,370	+		MMJJ_RS07200	0.63	+0.8
1,319,370	+		MMJJ_RS07200	0.63	+0.5
1,319,387	-		MMJJ_RS07200	0.64	+0.2
1,319,387	-		MMJJ_RS07200	0.64	-0.7
1,319,388	+		MMJJ_RS07200	0.64	-0.5
1,319,388	+		MMJJ_RS07200	0.64	+0.5
1,319,396	+		MMJJ_RS07200	0.65	-0.3
1,319,430	-		MMJJ_RS07200	0.68	+0.1
1,319,431	+		MMJJ_RS07200	0.68	+0.0
1,319,454	-		MMJJ_RS07200	0.70	+0.5
1,319,454	-		MMJJ_RS07200	0.70	+0.4
1,319,455	+		MMJJ_RS07200	0.70	+0.4
1,319,455	+		MMJJ_RS07200	0.70	-0.3
1,319,455	+		MMJJ_RS07200	0.70	+0.6
1,319,455	+				-0.3
1,319,455	+		MMJJ_RS07200	0.70	+0.7
1,319,459	-		MMJJ_RS07200	0.71	-0.6
1,319,464	-		MMJJ_RS07200	0.71	+0.3
1,319,465	+		MMJJ_RS07200	0.71	+0.5
1,319,465	+		MMJJ_RS07200	0.71	-0.1
1,319,465	+		MMJJ_RS07200	0.71	-0.2
1,319,465	+		MMJJ_RS07200	0.71	-0.5
1,319,503	+		MMJJ_RS07200	0.74	+0.8
1,319,517	-		MMJJ_RS07200	0.76	+0.7
1,319,537	-		MMJJ_RS07200	0.77	+0.9
1,319,537	-		MMJJ_RS07200	0.77	+1.8
1,319,538	+		MMJJ_RS07200	0.77	-1.0
1,319,538	+		MMJJ_RS07200	0.77	+0.8
1,319,553	+		MMJJ_RS07200	0.79	+0.7
1,319,577	-		MMJJ_RS07200	0.81	+1.2
1,319,577	-		MMJJ_RS07200	0.81	+1.5
1,319,577	-		MMJJ_RS07200	0.81	-1.4
1,319,577	-		MMJJ_RS07200	0.81	+0.1
1,319,578	+		MMJJ_RS07200	0.81	+0.4
1,319,578	+		MMJJ_RS07200	0.81	-0.4
1,319,578	+		MMJJ_RS07200	0.81	-0.5
1,319,581	-		MMJJ_RS07200	0.81	+0.3
1,319,582	+		MMJJ_RS07200	0.81	-0.5
1,319,582	+		MMJJ_RS07200	0.81	+0.5
1,319,643	+		MMJJ_RS07200	0.87	-2.0
1,319,649	-		MMJJ_RS07200	0.87	+0.6
1,319,661	-		MMJJ_RS07200	0.88	+0.9
1,319,662	+		MMJJ_RS07200	0.88	-2.8
1,319,663	-		MMJJ_RS07200	0.88	+0.3
1,319,664	+		MMJJ_RS07200	0.88	+0.1
1,319,664	+		MMJJ_RS07200	0.88	+0.5
1,319,716	+				+1.6
1,319,716	+				+0.2
1,319,730	+				-1.7
1,319,733	-				+0.8
1,319,739	+				+0.4
1,319,739	+				+1.0
1,319,814	-				-0.6
1,319,824	-				-0.6
1,319,850	-				+0.1
1,319,864	-				+0.4
1,319,966	-		MMJJ_RS07205	0.47	+0.9
1,319,966	-		MMJJ_RS07205	0.47	-2.6
1,319,990	-		MMJJ_RS07205	0.57	-0.2
1,320,025	+		MMJJ_RS07205	0.71	-0.5
1,320,026	-		MMJJ_RS07205	0.71	-0.7
1,320,026	-		MMJJ_RS07205	0.71	+0.9
1,320,026	-		MMJJ_RS07205	0.71	-0.6
1,320,026	-		MMJJ_RS07205	0.71	-2.4
1,320,026	-		MMJJ_RS07205	0.71	+0.7
1,320,027	+		MMJJ_RS07205	0.72	+0.3
1,320,027	+		MMJJ_RS07205	0.72	-0.2
1,320,027	+		MMJJ_RS07205	0.72	-0.3
1,320,051	+		MMJJ_RS07205	0.81	-0.9
1,320,072	-				+0.6
1,320,094	-				+0.0
1,320,107	-				+0.3
1,320,108	+				-1.5
1,320,118	-				+0.3
1,320,139	-				+0.0
1,320,140	+				-4.4
1,320,147	-				+0.1
1,320,209	+				+0.9
1,320,216	-				-0.2
1,320,216	-				-3.1
1,320,217	+				+0.8
1,320,221	+				-1.0
1,320,221	+				+0.2
1,320,266	-		MMJJ_RS07210	0.15	+0.6
1,320,291	-		MMJJ_RS07210	0.18	-0.3
1,320,291	-		MMJJ_RS07210	0.18	+0.2
1,320,292	+		MMJJ_RS07210	0.18	-0.1
1,320,292	+		MMJJ_RS07210	0.18	+0.2
1,320,292	+		MMJJ_RS07210	0.18	+2.0
1,320,293	-		MMJJ_RS07210	0.18	-0.3
1,320,293	-		MMJJ_RS07210	0.18	+0.4
1,320,319	+		MMJJ_RS07210	0.21	-0.8
1,320,351	-		MMJJ_RS07210	0.25	+1.1
1,320,394	-		MMJJ_RS07210	0.30	+0.8
1,320,410	-		MMJJ_RS07210	0.32	+0.5
1,320,438	-		MMJJ_RS07210	0.35	+1.1
1,320,438	-		MMJJ_RS07210	0.35	-1.6
1,320,466	-		MMJJ_RS07210	0.38	+0.1
1,320,467	+		MMJJ_RS07210	0.38	+0.3
1,320,467	+		MMJJ_RS07210	0.38	-1.6
1,320,471	-		MMJJ_RS07210	0.39	-1.2
1,320,472	+		MMJJ_RS07210	0.39	-0.6
1,320,472	+		MMJJ_RS07210	0.39	+0.3
1,320,491	+		MMJJ_RS07210	0.41	+0.3
1,320,491	+		MMJJ_RS07210	0.41	+0.3
1,320,491	+		MMJJ_RS07210	0.41	+0.3
1,320,506	-		MMJJ_RS07210	0.43	-0.1
1,320,506	-		MMJJ_RS07210	0.43	+0.4
1,320,507	+		MMJJ_RS07210	0.43	-0.8
1,320,541	+		MMJJ_RS07210	0.47	+2.5
1,320,541	+		MMJJ_RS07210	0.47	-3.2
1,320,541	+		MMJJ_RS07210	0.47	-1.0
1,320,568	+		MMJJ_RS07210	0.50	-0.7
1,320,573	-		MMJJ_RS07210	0.51	-1.3
1,320,573	-		MMJJ_RS07210	0.51	+0.9
1,320,573	-		MMJJ_RS07210	0.51	+0.3
1,320,573	-		MMJJ_RS07210	0.51	-1.4
1,320,573	-		MMJJ_RS07210	0.51	+0.9
1,320,574	+		MMJJ_RS07210	0.51	-0.7
1,320,580	+		MMJJ_RS07210	0.52	+1.4
1,320,614	-		MMJJ_RS07210	0.56	-0.7
1,320,615	+		MMJJ_RS07210	0.56	+0.7
1,320,619	+		MMJJ_RS07210	0.56	+0.2
1,320,731	-		MMJJ_RS07210	0.69	-0.8