Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06735

Experiment: McCas-formate glass attached

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas-formate glass attached
1,242,808	+		MMJJ_RS06725	0.82	-3.0
1,242,808	+		MMJJ_RS06725	0.82	+0.9
1,242,850	+				-3.9
1,242,850	+				-0.2
1,242,850	+				-2.4
1,242,850	+				-3.4
1,242,850	+				-1.1
1,242,854	-				-0.8
1,242,854	-				-0.1
1,242,855	+				-3.7
1,242,855	+				-0.7
1,242,870	-				+0.7
1,242,898	+				+1.3
1,243,020	+		MMJJ_RS06730	0.15	-0.7
1,243,033	-		MMJJ_RS06730	0.16	+1.2
1,243,034	+		MMJJ_RS06730	0.16	-1.8
1,243,097	-		MMJJ_RS06730	0.24	-0.9
1,243,097	-		MMJJ_RS06730	0.24	+0.5
1,243,105	+		MMJJ_RS06730	0.25	+2.5
1,243,119	-		MMJJ_RS06730	0.27	+0.6
1,243,120	+		MMJJ_RS06730	0.27	-0.1
1,243,120	+		MMJJ_RS06730	0.27	-0.4
1,243,122	+		MMJJ_RS06730	0.27	+1.0
1,243,130	-		MMJJ_RS06730	0.28	-2.4
1,243,130	-		MMJJ_RS06730	0.28	-3.3
1,243,136	-		MMJJ_RS06730	0.29	-3.3
1,243,137	+		MMJJ_RS06730	0.29	+1.4
1,243,158	+		MMJJ_RS06730	0.31	+1.2
1,243,178	-		MMJJ_RS06730	0.34	+1.8
1,243,178	-		MMJJ_RS06730	0.34	-2.6
1,243,314	+		MMJJ_RS06730	0.50	+2.1
1,243,551	+		MMJJ_RS06730	0.78	-3.3
1,243,701	-				-3.2
1,243,701	-				+1.7
1,243,702	+				+1.3
1,243,706	-				+0.3
1,243,752	-				-4.2
1,243,752	-				-2.0
1,243,752	-				+1.0
1,243,752	-				+0.8
1,243,752	-				-0.3
1,243,753	+				+0.3
1,243,753	+				+0.2
1,243,753	+				-0.0
1,243,753	+				-3.4
1,243,753	+				-0.1
1,243,753	+				-1.7
1,243,753	+				+0.6
1,243,753	+				-0.9
1,243,753	+				+0.1
1,243,753	+				-0.5
1,243,753	+				+1.4
1,243,754	-				+1.0
1,243,754	-				+0.1
1,243,754	-				-0.2
1,243,761	+				+0.9
1,243,766	-				+1.6
1,243,767	+				+0.5
1,243,785	-				-0.0
1,243,798	-				+1.1
1,243,803	-				+0.2
1,243,803	-				+0.4
1,243,808	-				-1.8
1,243,809	+				+0.1
1,243,809	+				-3.9
1,243,814	+				-2.1
1,243,814	+				-0.2
1,243,814	+				+0.0
1,243,830	-				+0.8
1,243,834	+				+1.0
1,243,843	+				+0.5
1,243,854	-				-2.1
1,243,926	+		MMJJ_RS06735	0.17	+0.5
1,243,936	-		MMJJ_RS06735	0.18	+1.4
1,243,937	+		MMJJ_RS06735	0.18	+0.2
1,243,942	+		MMJJ_RS06735	0.19	+0.5
1,243,942	+		MMJJ_RS06735	0.19	-2.5
1,243,944	+		MMJJ_RS06735	0.19	+0.4
1,243,944	+		MMJJ_RS06735	0.19	+1.2
1,243,986	-		MMJJ_RS06735	0.24	-0.1
1,244,093	+		MMJJ_RS06735	0.38	+1.8
1,244,150	+		MMJJ_RS06735	0.46	-3.3
1,244,150	+		MMJJ_RS06735	0.46	+0.7
1,244,154	-				+0.2
1,244,154	-		MMJJ_RS06735	0.46	-0.8
1,244,174	-		MMJJ_RS06735	0.49	+1.4
1,244,199	-		MMJJ_RS06735	0.52	+1.1
1,244,199	-		MMJJ_RS06735	0.52	-0.3
1,244,199	-		MMJJ_RS06735	0.52	+1.0
1,244,240	-		MMJJ_RS06735	0.57	-0.3
1,244,241	+		MMJJ_RS06735	0.57	+0.8
1,244,256	-		MMJJ_RS06735	0.59	-3.1
1,244,293	-		MMJJ_RS06735	0.64	-0.9
1,244,293	-		MMJJ_RS06735	0.64	-0.6
1,244,293	-		MMJJ_RS06735	0.64	-0.5
1,244,293	-		MMJJ_RS06735	0.64	-2.1
1,244,294	+		MMJJ_RS06735	0.64	+0.4
1,244,294	+		MMJJ_RS06735	0.64	+0.9
1,244,297	-		MMJJ_RS06735	0.65	-0.1
1,244,311	+		MMJJ_RS06735	0.66	-1.7
1,244,333	-		MMJJ_RS06735	0.69	-4.5
1,244,337	+		MMJJ_RS06735	0.70	+0.5
1,244,337	+		MMJJ_RS06735	0.70	-1.9
1,244,337	+		MMJJ_RS06735	0.70	+0.3
1,244,379	+		MMJJ_RS06735	0.75	-4.2
1,244,399	-		MMJJ_RS06735	0.78	-0.0
1,244,406	+		MMJJ_RS06735	0.79	+0.8
1,244,406	+		MMJJ_RS06735	0.79	+0.2
1,244,422	+		MMJJ_RS06735	0.81	+1.9
1,244,423	-		MMJJ_RS06735	0.81	+1.5
1,244,423	-		MMJJ_RS06735	0.81	-1.0
1,244,423	-		MMJJ_RS06735	0.81	+0.9
1,244,423	-		MMJJ_RS06735	0.81	-0.1
1,244,423	-		MMJJ_RS06735	0.81	+0.7
1,244,423	-		MMJJ_RS06735	0.81	-0.6
1,244,442	-		MMJJ_RS06735	0.83	-3.4
1,244,495	-				-0.2
1,244,508	+				+0.5
1,244,513	-				+0.4
1,244,533	-				+0.5
1,244,533	-				+0.5
1,244,534	+				+0.4
1,244,602	+				-0.8
1,244,629	+		MMJJ_RS06740	0.16	+0.5
1,244,634	+		MMJJ_RS06740	0.18	+1.1
1,244,635	-		MMJJ_RS06740	0.18	-3.5
1,244,635	-		MMJJ_RS06740	0.18	+0.1
1,244,635	-		MMJJ_RS06740	0.18	-1.4
1,244,636	+		MMJJ_RS06740	0.18	-0.4
1,244,642	+		MMJJ_RS06740	0.20	+1.4
1,244,649	+		MMJJ_RS06740	0.23	-1.5
1,244,673	+		MMJJ_RS06740	0.31	+0.8
1,244,727	-		MMJJ_RS06740	0.49	-1.6
1,244,785	+		MMJJ_RS06740	0.68	+0.8
1,244,812	+		MMJJ_RS06740	0.77	-0.5
1,244,829	+		MMJJ_RS06740	0.83	+0.5
1,244,834	+		MMJJ_RS06740	0.85	-0.8
1,244,840	-		MMJJ_RS06740	0.87	-3.6
1,244,841	+		MMJJ_RS06740	0.87	+0.8
1,244,841	+		MMJJ_RS06740	0.87	+0.6
1,244,841	+		MMJJ_RS06740	0.87	+0.1
1,244,913	-				+0.5
1,244,957	-		MMJJ_RS06745	0.12	+0.8
1,244,958	+		MMJJ_RS06745	0.12	+0.8
1,244,968	+		MMJJ_RS06745	0.13	+0.9
1,244,968	+		MMJJ_RS06745	0.13	+0.7
1,244,968	+		MMJJ_RS06745	0.13	-3.5
1,244,977	-		MMJJ_RS06745	0.15	+0.0
1,244,980	-		MMJJ_RS06745	0.15	-0.5
1,245,023	+		MMJJ_RS06745	0.21	-1.9
1,245,096	-		MMJJ_RS06745	0.32	-0.1
1,245,096	-		MMJJ_RS06745	0.32	+0.2
1,245,101	-		MMJJ_RS06745	0.33	+0.6
1,245,154	-		MMJJ_RS06745	0.41	+0.7
1,245,221	+		MMJJ_RS06745	0.51	+0.3
1,245,223	+		MMJJ_RS06745	0.51	-0.4
1,245,259	-		MMJJ_RS06745	0.56	-1.6
1,245,280	-		MMJJ_RS06745	0.59	+0.9
1,245,295	-		MMJJ_RS06745	0.62	+0.0
1,245,295	-		MMJJ_RS06745	0.62	+0.4
1,245,303	-		MMJJ_RS06745	0.63	-2.7
1,245,303	-		MMJJ_RS06745	0.63	+0.7
1,245,321	-		MMJJ_RS06745	0.65	+1.1
1,245,322	+		MMJJ_RS06745	0.65	+0.8
1,245,391	-		MMJJ_RS06745	0.76	+0.7
1,245,403	+		MMJJ_RS06745	0.77	+0.8
1,245,426	-		MMJJ_RS06745	0.81	-0.6
1,245,479	-		MMJJ_RS06745	0.89	-0.1
1,245,481	-		MMJJ_RS06745	0.89	-1.4
1,245,481	-		MMJJ_RS06745	0.89	+0.2
1,245,481	-		MMJJ_RS06745	0.89	-0.3
1,245,482	+		MMJJ_RS06745	0.89	-2.5
1,245,483	-		MMJJ_RS06745	0.89	-0.4
1,245,559	+				-1.9