Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06730

Experiment: McCas-formate glass attached

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas-formate glass attached
1,241,921	+		MMJJ_RS06720	0.42	+1.0
1,241,955	-		MMJJ_RS06720	0.46	+0.2
1,241,955	-		MMJJ_RS06720	0.46	+0.8
1,241,956	+		MMJJ_RS06720	0.47	-0.5
1,242,020	+		MMJJ_RS06720	0.54	-1.0
1,242,048	-		MMJJ_RS06720	0.58	-0.4
1,242,048	-		MMJJ_RS06720	0.58	+0.5
1,242,049	+		MMJJ_RS06720	0.58	-1.2
1,242,064	-		MMJJ_RS06720	0.60	-0.6
1,242,090	-		MMJJ_RS06720	0.63	+0.0
1,242,122	-		MMJJ_RS06720	0.67	-0.0
1,242,167	+		MMJJ_RS06720	0.73	-1.4
1,242,187	+		MMJJ_RS06720	0.75	+0.0
1,242,211	+		MMJJ_RS06720	0.78	+0.5
1,242,216	-		MMJJ_RS06720	0.79	+0.4
1,242,278	-		MMJJ_RS06720	0.87	+1.7
1,242,302	+		MMJJ_RS06720	0.90	-0.2
1,242,312	-				+0.4
1,242,366	-				+0.0
1,242,366	-				-0.1
1,242,366	-				-1.3
1,242,367	+				-2.8
1,242,367	+				-2.7
1,242,367	+				-0.7
1,242,367	+				+0.6
1,242,367	+				+0.5
1,242,367	+				-1.3
1,242,370	-				-0.1
1,242,380	-				+1.0
1,242,398	+				-0.2
1,242,414	-				+0.2
1,242,415	+				+0.6
1,242,446	-				-3.5
1,242,446	-				+0.8
1,242,447	+				-2.2
1,242,447	+				+0.1
1,242,467	-		MMJJ_RS06725	0.12	-0.1
1,242,468	+		MMJJ_RS06725	0.12	-2.4
1,242,480	+		MMJJ_RS06725	0.15	+0.5
1,242,480	+		MMJJ_RS06725	0.15	-3.0
1,242,497	+		MMJJ_RS06725	0.18	-3.4
1,242,500	-		MMJJ_RS06725	0.19	-0.2
1,242,513	+		MMJJ_RS06725	0.22	-3.0
1,242,514	-		MMJJ_RS06725	0.22	+0.2
1,242,515	+		MMJJ_RS06725	0.22	-0.1
1,242,550	-		MMJJ_RS06725	0.29	-3.2
1,242,550	-		MMJJ_RS06725	0.29	-3.2
1,242,551	+		MMJJ_RS06725	0.29	-1.0
1,242,551	+		MMJJ_RS06725	0.29	-1.2
1,242,565	-		MMJJ_RS06725	0.32	-2.1
1,242,566	+		MMJJ_RS06725	0.33	-2.1
1,242,570	-		MMJJ_RS06725	0.33	-0.3
1,242,575	-		MMJJ_RS06725	0.34	+0.3
1,242,575	-		MMJJ_RS06725	0.34	-0.1
1,242,585	-		MMJJ_RS06725	0.36	-3.4
1,242,586	+		MMJJ_RS06725	0.37	+0.2
1,242,639	+		MMJJ_RS06725	0.48	-3.6
1,242,641	-		MMJJ_RS06725	0.48	-4.6
1,242,641	-		MMJJ_RS06725	0.48	-4.4
1,242,641	-		MMJJ_RS06725	0.48	-2.7
1,242,642	+		MMJJ_RS06725	0.48	-4.3
1,242,650	-		MMJJ_RS06725	0.50	+0.3
1,242,650	-		MMJJ_RS06725	0.50	-0.6
1,242,675	-		MMJJ_RS06725	0.55	-0.3
1,242,681	+		MMJJ_RS06725	0.56	-2.2
1,242,681	+		MMJJ_RS06725	0.56	-3.2
1,242,681	+		MMJJ_RS06725	0.56	-3.3
1,242,681	+		MMJJ_RS06725	0.56	-1.2
1,242,681	+		MMJJ_RS06725	0.56	-1.2
1,242,696	+		MMJJ_RS06725	0.59	-0.0
1,242,707	-		MMJJ_RS06725	0.62	-1.4
1,242,707	-		MMJJ_RS06725	0.62	-3.4
1,242,707	-		MMJJ_RS06725	0.62	-3.3
1,242,708	+				+2.6
1,242,708	+		MMJJ_RS06725	0.62	-2.8
1,242,708	+		MMJJ_RS06725	0.62	-2.5
1,242,708	+		MMJJ_RS06725	0.62	-2.4
1,242,708	+		MMJJ_RS06725	0.62	-0.6
1,242,708	+		MMJJ_RS06725	0.62	-1.2
1,242,708	+		MMJJ_RS06725	0.62	-0.1
1,242,717	-		MMJJ_RS06725	0.64	+0.6
1,242,718	+		MMJJ_RS06725	0.64	-2.8
1,242,738	+		MMJJ_RS06725	0.68	+0.7
1,242,750	-		MMJJ_RS06725	0.70	-0.0
1,242,750	-		MMJJ_RS06725	0.70	-0.5
1,242,751	+		MMJJ_RS06725	0.71	+0.5
1,242,771	-		MMJJ_RS06725	0.75	+1.0
1,242,808	+		MMJJ_RS06725	0.82	-3.0
1,242,808	+		MMJJ_RS06725	0.82	+0.9
1,242,850	+				-3.9
1,242,850	+				-0.2
1,242,850	+				-2.4
1,242,850	+				-3.4
1,242,850	+				-1.1
1,242,854	-				-0.8
1,242,854	-				-0.1
1,242,855	+				-3.7
1,242,855	+				-0.7
1,242,870	-				+0.7
1,242,898	+				+1.3
1,243,020	+		MMJJ_RS06730	0.15	-0.7
1,243,033	-		MMJJ_RS06730	0.16	+1.2
1,243,034	+		MMJJ_RS06730	0.16	-1.8
1,243,097	-		MMJJ_RS06730	0.24	-0.9
1,243,097	-		MMJJ_RS06730	0.24	+0.5
1,243,105	+		MMJJ_RS06730	0.25	+2.5
1,243,119	-		MMJJ_RS06730	0.27	+0.6
1,243,120	+		MMJJ_RS06730	0.27	-0.1
1,243,120	+		MMJJ_RS06730	0.27	-0.4
1,243,122	+		MMJJ_RS06730	0.27	+1.0
1,243,130	-		MMJJ_RS06730	0.28	-2.4
1,243,130	-		MMJJ_RS06730	0.28	-3.3
1,243,136	-		MMJJ_RS06730	0.29	-3.3
1,243,137	+		MMJJ_RS06730	0.29	+1.4
1,243,158	+		MMJJ_RS06730	0.31	+1.2
1,243,178	-		MMJJ_RS06730	0.34	+1.8
1,243,178	-		MMJJ_RS06730	0.34	-2.6
1,243,314	+		MMJJ_RS06730	0.50	+2.1
1,243,551	+		MMJJ_RS06730	0.78	-3.3
1,243,701	-				-3.2
1,243,701	-				+1.7
1,243,702	+				+1.3
1,243,706	-				+0.3
1,243,752	-				-4.2
1,243,752	-				-2.0
1,243,752	-				+1.0
1,243,752	-				+0.8
1,243,752	-				-0.3
1,243,753	+				+0.3
1,243,753	+				+0.2
1,243,753	+				-0.0
1,243,753	+				-3.4
1,243,753	+				-0.1
1,243,753	+				-1.7
1,243,753	+				+0.6
1,243,753	+				-0.9
1,243,753	+				+0.1
1,243,753	+				-0.5
1,243,753	+				+1.4
1,243,754	-				+1.0
1,243,754	-				+0.1
1,243,754	-				-0.2
1,243,761	+				+0.9
1,243,766	-				+1.6
1,243,767	+				+0.5
1,243,785	-				-0.0
1,243,798	-				+1.1
1,243,803	-				+0.2
1,243,803	-				+0.4
1,243,808	-				-1.8
1,243,809	+				+0.1
1,243,809	+				-3.9
1,243,814	+				-2.1
1,243,814	+				-0.2
1,243,814	+				+0.0
1,243,830	-				+0.8
1,243,834	+				+1.0
1,243,843	+				+0.5
1,243,854	-				-2.1
1,243,926	+		MMJJ_RS06735	0.17	+0.5
1,243,936	-		MMJJ_RS06735	0.18	+1.4
1,243,937	+		MMJJ_RS06735	0.18	+0.2
1,243,942	+		MMJJ_RS06735	0.19	+0.5
1,243,942	+		MMJJ_RS06735	0.19	-2.5
1,243,944	+		MMJJ_RS06735	0.19	+0.4
1,243,944	+		MMJJ_RS06735	0.19	+1.2
1,243,986	-		MMJJ_RS06735	0.24	-0.1
1,244,093	+		MMJJ_RS06735	0.38	+1.8
1,244,150	+		MMJJ_RS06735	0.46	-3.3
1,244,150	+		MMJJ_RS06735	0.46	+0.7
1,244,154	-				+0.2
1,244,154	-		MMJJ_RS06735	0.46	-0.8
1,244,174	-		MMJJ_RS06735	0.49	+1.4
1,244,199	-		MMJJ_RS06735	0.52	+1.1
1,244,199	-		MMJJ_RS06735	0.52	-0.3
1,244,199	-		MMJJ_RS06735	0.52	+1.0
1,244,240	-		MMJJ_RS06735	0.57	-0.3
1,244,241	+		MMJJ_RS06735	0.57	+0.8
1,244,256	-		MMJJ_RS06735	0.59	-3.1
1,244,293	-		MMJJ_RS06735	0.64	-0.9
1,244,293	-		MMJJ_RS06735	0.64	-0.6
1,244,293	-		MMJJ_RS06735	0.64	-0.5
1,244,293	-		MMJJ_RS06735	0.64	-2.1
1,244,294	+		MMJJ_RS06735	0.64	+0.4
1,244,294	+		MMJJ_RS06735	0.64	+0.9
1,244,297	-		MMJJ_RS06735	0.65	-0.1
1,244,311	+		MMJJ_RS06735	0.66	-1.7
1,244,333	-		MMJJ_RS06735	0.69	-4.5
1,244,337	+		MMJJ_RS06735	0.70	+0.5
1,244,337	+		MMJJ_RS06735	0.70	-1.9
1,244,337	+		MMJJ_RS06735	0.70	+0.3
1,244,379	+		MMJJ_RS06735	0.75	-4.2
1,244,399	-		MMJJ_RS06735	0.78	-0.0
1,244,406	+		MMJJ_RS06735	0.79	+0.8
1,244,406	+		MMJJ_RS06735	0.79	+0.2
1,244,422	+		MMJJ_RS06735	0.81	+1.9
1,244,423	-		MMJJ_RS06735	0.81	+1.5
1,244,423	-		MMJJ_RS06735	0.81	-1.0
1,244,423	-		MMJJ_RS06735	0.81	+0.9
1,244,423	-		MMJJ_RS06735	0.81	-0.1
1,244,423	-		MMJJ_RS06735	0.81	+0.7
1,244,423	-		MMJJ_RS06735	0.81	-0.6
1,244,442	-		MMJJ_RS06735	0.83	-3.4
1,244,495	-				-0.2
1,244,508	+				+0.5
1,244,513	-				+0.4
1,244,533	-				+0.5
1,244,533	-				+0.5
1,244,534	+				+0.4
1,244,602	+				-0.8
1,244,629	+		MMJJ_RS06740	0.16	+0.5
1,244,634	+		MMJJ_RS06740	0.18	+1.1
1,244,635	-		MMJJ_RS06740	0.18	-3.5
1,244,635	-		MMJJ_RS06740	0.18	+0.1
1,244,635	-		MMJJ_RS06740	0.18	-1.4
1,244,636	+		MMJJ_RS06740	0.18	-0.4
1,244,642	+		MMJJ_RS06740	0.20	+1.4
1,244,649	+		MMJJ_RS06740	0.23	-1.5
1,244,673	+		MMJJ_RS06740	0.31	+0.8
1,244,727	-		MMJJ_RS06740	0.49	-1.6