Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06630

Experiment: McCas-formate glass attached

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS06620 and MMJJ_RS06625 are separated by 16 nucleotidesMMJJ_RS06625 and MMJJ_RS06630 are separated by 23 nucleotidesMMJJ_RS06630 and MMJJ_RS06635 are separated by 18 nucleotidesMMJJ_RS06635 and MMJJ_RS06640 are separated by 10 nucleotides MMJJ_RS06620: MMJJ_RS06620 - pyruvate synthase subunit PorA, at 1,222,196 to 1,223,359 _RS06620 MMJJ_RS06625: MMJJ_RS06625 - pyruvate synthase subunit PorB, at 1,223,376 to 1,224,272 _RS06625 MMJJ_RS06630: MMJJ_RS06630 - 4Fe-4S dicluster domain-containing protein, at 1,224,296 to 1,224,799 _RS06630 MMJJ_RS06635: MMJJ_RS06635 - 4Fe-4S binding protein, at 1,224,818 to 1,225,234 _RS06635 MMJJ_RS06640: MMJJ_RS06640 - YfcE family phosphodiesterase, at 1,225,245 to 1,225,736 _RS06640 Position (kb) 1224 1225Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1223.470 kb on - strand, within MMJJ_RS06625at 1223.762 kb on - strand, within MMJJ_RS06625at 1224.132 kb on + strand, within MMJJ_RS06625at 1224.142 kb on + strand, within MMJJ_RS06625at 1224.271 kb on + strandat 1224.271 kb on + strandat 1224.306 kb on - strandat 1224.332 kb on + strandat 1224.349 kb on - strand, within MMJJ_RS06630at 1224.410 kb on - strand, within MMJJ_RS06630at 1224.420 kb on - strand, within MMJJ_RS06630at 1224.451 kb on - strand, within MMJJ_RS06630at 1224.451 kb on - strand, within MMJJ_RS06630at 1224.452 kb on + strand, within MMJJ_RS06630at 1224.452 kb on + strand, within MMJJ_RS06630at 1224.459 kb on - strand, within MMJJ_RS06630at 1224.459 kb on - strand, within MMJJ_RS06630at 1224.459 kb on - strand, within MMJJ_RS06630at 1224.459 kb on - strand, within MMJJ_RS06630at 1224.459 kb on - strand, within MMJJ_RS06630at 1224.460 kb on + strand, within MMJJ_RS06630at 1224.460 kb on + strand, within MMJJ_RS06630at 1224.460 kb on + strand, within MMJJ_RS06630at 1224.495 kb on - strand, within MMJJ_RS06630at 1224.495 kb on - strand, within MMJJ_RS06630at 1224.495 kb on - strand, within MMJJ_RS06630at 1224.564 kb on - strand, within MMJJ_RS06630at 1224.565 kb on + strand, within MMJJ_RS06630at 1224.566 kb on - strand, within MMJJ_RS06630at 1224.566 kb on - strand, within MMJJ_RS06630at 1224.566 kb on - strand, within MMJJ_RS06630at 1224.566 kb on - strand, within MMJJ_RS06630at 1224.566 kb on - strand, within MMJJ_RS06630at 1224.566 kb on - strand, within MMJJ_RS06630at 1224.566 kb on - strand, within MMJJ_RS06630at 1224.566 kb on - strand, within MMJJ_RS06630at 1224.566 kb on - strand, within MMJJ_RS06630at 1224.566 kb on - strand, within MMJJ_RS06630at 1224.566 kb on - strand, within MMJJ_RS06630at 1224.566 kb on - strand, within MMJJ_RS06630at 1224.566 kb on - strand, within MMJJ_RS06630at 1224.566 kb on - strand, within MMJJ_RS06630at 1224.567 kb on + strand, within MMJJ_RS06630at 1224.567 kb on + strand, within MMJJ_RS06630at 1224.567 kb on + strand, within MMJJ_RS06630at 1224.567 kb on + strand, within MMJJ_RS06630at 1224.567 kb on + strand, within MMJJ_RS06630at 1224.567 kb on + strand, within MMJJ_RS06630at 1224.567 kb on + strand, within MMJJ_RS06630at 1224.567 kb on + strand, within MMJJ_RS06630at 1224.567 kb on + strand, within MMJJ_RS06630at 1224.571 kb on + strand, within MMJJ_RS06630at 1224.632 kb on + strand, within MMJJ_RS06630at 1224.632 kb on + strand, within MMJJ_RS06630at 1224.663 kb on - strand, within MMJJ_RS06630at 1224.664 kb on + strand, within MMJJ_RS06630at 1224.701 kb on + strand, within MMJJ_RS06630at 1224.704 kb on + strand, within MMJJ_RS06630at 1224.731 kb on + strand, within MMJJ_RS06630at 1224.731 kb on + strand, within MMJJ_RS06630at 1224.773 kb on + strandat 1224.790 kb on - strandat 1224.790 kb on - strandat 1224.803 kb on - strandat 1224.804 kb on + strandat 1224.836 kb on + strandat 1224.916 kb on - strand, within MMJJ_RS06635at 1224.916 kb on - strand, within MMJJ_RS06635at 1224.917 kb on + strand, within MMJJ_RS06635at 1224.917 kb on + strand, within MMJJ_RS06635at 1224.922 kb on - strand, within MMJJ_RS06635at 1224.922 kb on - strand, within MMJJ_RS06635at 1224.922 kb on - strand, within MMJJ_RS06635at 1224.922 kb on - strand, within MMJJ_RS06635at 1224.922 kb on - strand, within MMJJ_RS06635at 1224.922 kb on - strand, within MMJJ_RS06635at 1224.922 kb on - strand, within MMJJ_RS06635at 1224.922 kb on - strand, within MMJJ_RS06635at 1224.923 kb on + strand, within MMJJ_RS06635at 1224.923 kb on + strand, within MMJJ_RS06635at 1224.923 kb on + strand, within MMJJ_RS06635at 1224.923 kb on + strand, within MMJJ_RS06635at 1224.923 kb on + strand, within MMJJ_RS06635at 1224.923 kb on + strand, within MMJJ_RS06635at 1224.923 kb on + strand, within MMJJ_RS06635at 1224.923 kb on + strand, within MMJJ_RS06635at 1224.950 kb on + strand, within MMJJ_RS06635at 1224.954 kb on - strand, within MMJJ_RS06635at 1224.954 kb on - strand, within MMJJ_RS06635at 1224.954 kb on - strand, within MMJJ_RS06635at 1224.955 kb on + strand, within MMJJ_RS06635at 1224.955 kb on + strand, within MMJJ_RS06635at 1224.955 kb on + strand, within MMJJ_RS06635at 1224.988 kb on - strand, within MMJJ_RS06635at 1224.993 kb on - strand, within MMJJ_RS06635at 1224.993 kb on - strand, within MMJJ_RS06635at 1224.994 kb on + strand, within MMJJ_RS06635at 1224.997 kb on + strand, within MMJJ_RS06635at 1224.999 kb on - strand, within MMJJ_RS06635at 1224.999 kb on - strand, within MMJJ_RS06635at 1224.999 kb on - strand, within MMJJ_RS06635at 1225.000 kb on + strand, within MMJJ_RS06635at 1225.000 kb on + strand, within MMJJ_RS06635at 1225.000 kb on + strand, within MMJJ_RS06635at 1225.000 kb on + strand, within MMJJ_RS06635at 1225.000 kb on + strand, within MMJJ_RS06635at 1225.029 kb on - strand, within MMJJ_RS06635at 1225.030 kb on + strand, within MMJJ_RS06635at 1225.041 kb on - strand, within MMJJ_RS06635at 1225.041 kb on - strand, within MMJJ_RS06635at 1225.059 kb on - strand, within MMJJ_RS06635at 1225.069 kb on - strand, within MMJJ_RS06635at 1225.070 kb on + strand, within MMJJ_RS06635at 1225.090 kb on + strand, within MMJJ_RS06635at 1225.105 kb on - strand, within MMJJ_RS06635at 1225.105 kb on - strand, within MMJJ_RS06635at 1225.106 kb on + strand, within MMJJ_RS06635at 1225.125 kb on - strand, within MMJJ_RS06635at 1225.125 kb on - strand, within MMJJ_RS06635at 1225.125 kb on - strand, within MMJJ_RS06635at 1225.126 kb on + strand, within MMJJ_RS06635at 1225.126 kb on + strand, within MMJJ_RS06635at 1225.126 kb on + strand, within MMJJ_RS06635at 1225.137 kb on - strand, within MMJJ_RS06635at 1225.137 kb on - strand, within MMJJ_RS06635at 1225.137 kb on - strand, within MMJJ_RS06635at 1225.138 kb on + strand, within MMJJ_RS06635at 1225.138 kb on + strand, within MMJJ_RS06635at 1225.138 kb on + strand, within MMJJ_RS06635at 1225.144 kb on - strand, within MMJJ_RS06635at 1225.163 kb on - strand, within MMJJ_RS06635at 1225.171 kb on - strand, within MMJJ_RS06635at 1225.260 kb on - strandat 1225.287 kb on - strandat 1225.293 kb on - strandat 1225.357 kb on + strand, within MMJJ_RS06640at 1225.377 kb on - strand, within MMJJ_RS06640at 1225.377 kb on - strand, within MMJJ_RS06640at 1225.377 kb on - strandat 1225.378 kb on + strand, within MMJJ_RS06640at 1225.378 kb on + strand, within MMJJ_RS06640at 1225.378 kb on + strand, within MMJJ_RS06640at 1225.386 kb on - strand, within MMJJ_RS06640at 1225.386 kb on - strand, within MMJJ_RS06640at 1225.386 kb on - strand, within MMJJ_RS06640at 1225.391 kb on - strand, within MMJJ_RS06640at 1225.391 kb on - strand, within MMJJ_RS06640at 1225.391 kb on - strand, within MMJJ_RS06640at 1225.392 kb on + strand, within MMJJ_RS06640at 1225.392 kb on + strand, within MMJJ_RS06640at 1225.403 kb on - strand, within MMJJ_RS06640at 1225.404 kb on + strand, within MMJJ_RS06640at 1225.404 kb on + strand, within MMJJ_RS06640at 1225.444 kb on + strand, within MMJJ_RS06640at 1225.448 kb on + strand, within MMJJ_RS06640at 1225.463 kb on - strand, within MMJJ_RS06640at 1225.463 kb on - strand, within MMJJ_RS06640at 1225.463 kb on - strand, within MMJJ_RS06640at 1225.464 kb on + strand, within MMJJ_RS06640at 1225.464 kb on + strand, within MMJJ_RS06640at 1225.464 kb on + strand, within MMJJ_RS06640at 1225.524 kb on - strand, within MMJJ_RS06640at 1225.524 kb on - strand, within MMJJ_RS06640at 1225.524 kb on - strand, within MMJJ_RS06640at 1225.524 kb on - strand, within MMJJ_RS06640at 1225.550 kb on - strand, within MMJJ_RS06640at 1225.552 kb on - strand, within MMJJ_RS06640at 1225.552 kb on - strand, within MMJJ_RS06640at 1225.553 kb on + strand, within MMJJ_RS06640at 1225.623 kb on - strand, within MMJJ_RS06640at 1225.624 kb on + strand, within MMJJ_RS06640at 1225.707 kb on + strandat 1225.728 kb on - strandat 1225.728 kb on - strandat 1225.730 kb on - strandat 1225.770 kb on - strandat 1225.771 kb on + strandat 1225.774 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas-formate glass attached
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1,223,470 - MMJJ_RS06625 0.10 -1.6
1,223,762 - MMJJ_RS06625 0.43 -2.5
1,224,132 + MMJJ_RS06625 0.84 -1.6
1,224,142 + MMJJ_RS06625 0.85 +0.2
1,224,271 + -3.2
1,224,271 + +0.3
1,224,306 - -0.3
1,224,332 + +0.1
1,224,349 - MMJJ_RS06630 0.11 +0.5
1,224,410 - MMJJ_RS06630 0.23 +1.2
1,224,420 - MMJJ_RS06630 0.25 +0.9
1,224,451 - MMJJ_RS06630 0.31 +0.1
1,224,451 - MMJJ_RS06630 0.31 +0.5
1,224,452 + MMJJ_RS06630 0.31 +0.8
1,224,452 + MMJJ_RS06630 0.31 +1.1
1,224,459 - MMJJ_RS06630 0.32 -0.8
1,224,459 - MMJJ_RS06630 0.32 -0.5
1,224,459 - MMJJ_RS06630 0.32 +1.2
1,224,459 - MMJJ_RS06630 0.32 -2.9
1,224,459 - MMJJ_RS06630 0.32 +1.1
1,224,460 + MMJJ_RS06630 0.33 +1.0
1,224,460 + MMJJ_RS06630 0.33 +0.6
1,224,460 + MMJJ_RS06630 0.33 +1.3
1,224,495 - MMJJ_RS06630 0.39 +1.0
1,224,495 - MMJJ_RS06630 0.39 +0.5
1,224,495 - MMJJ_RS06630 0.39 +1.1
1,224,564 - MMJJ_RS06630 0.53 -0.7
1,224,565 + MMJJ_RS06630 0.53 +0.0
1,224,566 - MMJJ_RS06630 0.54 -0.8
1,224,566 - MMJJ_RS06630 0.54 +1.4
1,224,566 - MMJJ_RS06630 0.54 +0.1
1,224,566 - MMJJ_RS06630 0.54 +0.5
1,224,566 - MMJJ_RS06630 0.54 -0.3
1,224,566 - MMJJ_RS06630 0.54 -1.6
1,224,566 - MMJJ_RS06630 0.54 +0.9
1,224,566 - MMJJ_RS06630 0.54 -4.4
1,224,566 - MMJJ_RS06630 0.54 +0.7
1,224,566 - MMJJ_RS06630 0.54 +0.7
1,224,566 - MMJJ_RS06630 0.54 -1.8
1,224,566 - MMJJ_RS06630 0.54 +0.5
1,224,566 - MMJJ_RS06630 0.54 +0.5
1,224,566 - MMJJ_RS06630 0.54 -1.1
1,224,567 + MMJJ_RS06630 0.54 +1.2
1,224,567 + MMJJ_RS06630 0.54 +0.1
1,224,567 + MMJJ_RS06630 0.54 +1.4
1,224,567 + MMJJ_RS06630 0.54 +0.4
1,224,567 + MMJJ_RS06630 0.54 +0.2
1,224,567 + MMJJ_RS06630 0.54 +0.9
1,224,567 + MMJJ_RS06630 0.54 -4.1
1,224,567 + MMJJ_RS06630 0.54 +1.4
1,224,567 + MMJJ_RS06630 0.54 +1.0
1,224,571 + MMJJ_RS06630 0.55 -2.6
1,224,632 + MMJJ_RS06630 0.67 -0.7
1,224,632 + MMJJ_RS06630 0.67 +0.1
1,224,663 - MMJJ_RS06630 0.73 +0.5
1,224,664 + MMJJ_RS06630 0.73 +0.5
1,224,701 + MMJJ_RS06630 0.80 +1.5
1,224,704 + MMJJ_RS06630 0.81 -0.0
1,224,731 + MMJJ_RS06630 0.86 +0.3
1,224,731 + MMJJ_RS06630 0.86 +1.6
1,224,773 + -1.7
1,224,790 - +0.0
1,224,790 - -0.3
1,224,803 - +0.5
1,224,804 + +0.1
1,224,836 + +0.2
1,224,916 - MMJJ_RS06635 0.24 -1.6
1,224,916 - MMJJ_RS06635 0.24 +0.5
1,224,917 + MMJJ_RS06635 0.24 +0.5
1,224,917 + MMJJ_RS06635 0.24 +1.3
1,224,922 - MMJJ_RS06635 0.25 -0.0
1,224,922 - MMJJ_RS06635 0.25 -0.4
1,224,922 - MMJJ_RS06635 0.25 -1.2
1,224,922 - MMJJ_RS06635 0.25 -1.7
1,224,922 - MMJJ_RS06635 0.25 +0.9
1,224,922 - MMJJ_RS06635 0.25 +1.4
1,224,922 - MMJJ_RS06635 0.25 -1.3
1,224,922 - MMJJ_RS06635 0.25 +0.8
1,224,923 + MMJJ_RS06635 0.25 +0.5
1,224,923 + MMJJ_RS06635 0.25 +0.5
1,224,923 + MMJJ_RS06635 0.25 +0.1
1,224,923 + MMJJ_RS06635 0.25 +0.5
1,224,923 + MMJJ_RS06635 0.25 -0.5
1,224,923 + MMJJ_RS06635 0.25 -0.0
1,224,923 + MMJJ_RS06635 0.25 +0.5
1,224,923 + MMJJ_RS06635 0.25 -1.4
1,224,950 + MMJJ_RS06635 0.32 +1.6
1,224,954 - MMJJ_RS06635 0.33 +0.7
1,224,954 - MMJJ_RS06635 0.33 -0.6
1,224,954 - MMJJ_RS06635 0.33 +0.4
1,224,955 + MMJJ_RS06635 0.33 -3.3
1,224,955 + MMJJ_RS06635 0.33 +0.4
1,224,955 + MMJJ_RS06635 0.33 -0.6
1,224,988 - MMJJ_RS06635 0.41 +0.2
1,224,993 - MMJJ_RS06635 0.42 -0.1
1,224,993 - MMJJ_RS06635 0.42 -1.8
1,224,994 + MMJJ_RS06635 0.42 +0.1
1,224,997 + MMJJ_RS06635 0.43 +0.4
1,224,999 - MMJJ_RS06635 0.43 +1.7
1,224,999 - MMJJ_RS06635 0.43 -0.1
1,224,999 - MMJJ_RS06635 0.43 +0.4
1,225,000 + MMJJ_RS06635 0.44 +0.3
1,225,000 + MMJJ_RS06635 0.44 -0.7
1,225,000 + MMJJ_RS06635 0.44 +0.4
1,225,000 + MMJJ_RS06635 0.44 +0.6
1,225,000 + MMJJ_RS06635 0.44 +0.6
1,225,029 - MMJJ_RS06635 0.51 +2.0
1,225,030 + MMJJ_RS06635 0.51 +1.0
1,225,041 - MMJJ_RS06635 0.53 +0.3
1,225,041 - MMJJ_RS06635 0.53 -0.5
1,225,059 - MMJJ_RS06635 0.58 +2.0
1,225,069 - MMJJ_RS06635 0.60 +0.1
1,225,070 + MMJJ_RS06635 0.60 +0.7
1,225,090 + MMJJ_RS06635 0.65 +1.9
1,225,105 - MMJJ_RS06635 0.69 -1.4
1,225,105 - MMJJ_RS06635 0.69 -0.8
1,225,106 + MMJJ_RS06635 0.69 -0.3
1,225,125 - MMJJ_RS06635 0.74 -0.7
1,225,125 - MMJJ_RS06635 0.74 +0.7
1,225,125 - MMJJ_RS06635 0.74 -0.1
1,225,126 + MMJJ_RS06635 0.74 +0.6
1,225,126 + MMJJ_RS06635 0.74 -1.5
1,225,126 + MMJJ_RS06635 0.74 +1.5
1,225,137 - MMJJ_RS06635 0.76 +0.2
1,225,137 - MMJJ_RS06635 0.76 +1.7
1,225,137 - MMJJ_RS06635 0.76 -0.1
1,225,138 + MMJJ_RS06635 0.77 -5.0
1,225,138 + MMJJ_RS06635 0.77 +0.4
1,225,138 + MMJJ_RS06635 0.77 -0.0
1,225,144 - MMJJ_RS06635 0.78 +0.3
1,225,163 - MMJJ_RS06635 0.83 +1.6
1,225,171 - MMJJ_RS06635 0.85 +0.6
1,225,260 - -1.7
1,225,287 - +0.9
1,225,293 - +1.1
1,225,357 + MMJJ_RS06640 0.23 -0.5
1,225,377 - MMJJ_RS06640 0.27 -1.5
1,225,377 - MMJJ_RS06640 0.27 -0.1
1,225,377 - +2.2
1,225,378 + MMJJ_RS06640 0.27 +0.4
1,225,378 + MMJJ_RS06640 0.27 +0.7
1,225,378 + MMJJ_RS06640 0.27 +1.2
1,225,386 - MMJJ_RS06640 0.29 +0.8
1,225,386 - MMJJ_RS06640 0.29 +0.9
1,225,386 - MMJJ_RS06640 0.29 +0.0
1,225,391 - MMJJ_RS06640 0.30 +0.5
1,225,391 - MMJJ_RS06640 0.30 +0.6
1,225,391 - MMJJ_RS06640 0.30 +0.8
1,225,392 + MMJJ_RS06640 0.30 -0.8
1,225,392 + MMJJ_RS06640 0.30 -1.7
1,225,403 - MMJJ_RS06640 0.32 +1.2
1,225,404 + MMJJ_RS06640 0.32 +0.2
1,225,404 + MMJJ_RS06640 0.32 -0.2
1,225,444 + MMJJ_RS06640 0.40 +0.1
1,225,448 + MMJJ_RS06640 0.41 +0.4
1,225,463 - MMJJ_RS06640 0.44 -1.0
1,225,463 - MMJJ_RS06640 0.44 -0.5
1,225,463 - MMJJ_RS06640 0.44 -1.8
1,225,464 + MMJJ_RS06640 0.45 -0.0
1,225,464 + MMJJ_RS06640 0.45 +2.2
1,225,464 + MMJJ_RS06640 0.45 -2.8
1,225,524 - MMJJ_RS06640 0.57 +2.0
1,225,524 - MMJJ_RS06640 0.57 +1.0
1,225,524 - MMJJ_RS06640 0.57 -1.5
1,225,524 - MMJJ_RS06640 0.57 +1.5
1,225,550 - MMJJ_RS06640 0.62 +0.2
1,225,552 - MMJJ_RS06640 0.62 -2.8
1,225,552 - MMJJ_RS06640 0.62 +0.9
1,225,553 + MMJJ_RS06640 0.63 -1.4
1,225,623 - MMJJ_RS06640 0.77 -2.2
1,225,624 + MMJJ_RS06640 0.77 -1.1
1,225,707 + -1.0
1,225,728 - +0.9
1,225,728 - -3.8
1,225,730 - +1.2
1,225,770 - -1.4
1,225,771 + +0.5
1,225,774 - +1.1

Or see this region's nucleotide sequence