Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06585

Experiment: McCas-formate glass attached

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas-formate glass attached
1,215,169	+		MMJJ_RS06580	0.20	-1.0
1,215,226	-		MMJJ_RS06580	0.25	-3.5
1,215,226	-		MMJJ_RS06580	0.25	+0.7
1,215,226	-		MMJJ_RS06580	0.25	+1.5
1,215,226	-		MMJJ_RS06580	0.25	-1.5
1,215,226	-		MMJJ_RS06580	0.25	+1.4
1,215,227	+		MMJJ_RS06580	0.25	-4.9
1,215,227	+		MMJJ_RS06580	0.25	-0.8
1,215,255	-		MMJJ_RS06580	0.27	-0.0
1,215,255	-		MMJJ_RS06580	0.27	+0.5
1,215,255	-		MMJJ_RS06580	0.27	+0.1
1,215,255	-		MMJJ_RS06580	0.27	-2.1
1,215,256	+		MMJJ_RS06580	0.28	-0.2
1,215,326	-		MMJJ_RS06580	0.34	-0.1
1,215,326	-		MMJJ_RS06580	0.34	+0.4
1,215,327	+		MMJJ_RS06580	0.34	-0.1
1,215,327	+		MMJJ_RS06580	0.34	+0.3
1,215,335	-		MMJJ_RS06580	0.35	+0.9
1,215,336	+		MMJJ_RS06580	0.35	-2.7
1,215,388	-		MMJJ_RS06580	0.39	+0.0
1,215,389	+		MMJJ_RS06580	0.39	-1.4
1,215,422	-		MMJJ_RS06580	0.42	+0.4
1,215,468	+		MMJJ_RS06580	0.46	-0.3
1,215,468	+		MMJJ_RS06580	0.46	+0.6
1,215,487	+		MMJJ_RS06580	0.48	-0.3
1,215,510	+		MMJJ_RS06580	0.50	-0.8
1,215,537	+		MMJJ_RS06580	0.53	-0.3
1,215,563	+		MMJJ_RS06580	0.55	-0.6
1,215,563	+		MMJJ_RS06580	0.55	-0.3
1,215,573	-		MMJJ_RS06580	0.56	+1.1
1,215,574	+		MMJJ_RS06580	0.56	-0.6
1,215,599	-		MMJJ_RS06580	0.58	-0.3
1,215,599	-		MMJJ_RS06580	0.58	-0.7
1,215,600	+		MMJJ_RS06580	0.58	+0.2
1,215,666	+		MMJJ_RS06580	0.64	+0.8
1,215,811	-		MMJJ_RS06580	0.77	-2.4
1,215,877	+		MMJJ_RS06580	0.83	+0.6
1,215,877	+		MMJJ_RS06580	0.83	+0.3
1,215,877	+		MMJJ_RS06580	0.83	+0.2
1,215,880	-		MMJJ_RS06580	0.83	+1.0
1,215,881	+		MMJJ_RS06580	0.83	+0.1
1,215,915	+		MMJJ_RS06580	0.86	-0.2
1,215,947	-		MMJJ_RS06580	0.89	-0.7
1,215,977	-				-0.3
1,216,004	+				+0.9
1,216,004	+				-0.9
1,216,037	+				-4.3
1,216,067	+				+0.1
1,216,071	+				-0.0
1,216,082	+				-0.5
1,216,109	-				+0.5
1,216,109	-				-0.1
1,216,109	-				-0.0
1,216,112	+				-0.8
1,216,112	+				-0.9
1,216,112	+				+0.8
1,216,168	-				+0.1
1,216,169	+				-0.5
1,216,230	-				+0.1
1,216,350	-		MMJJ_RS06585	0.20	+1.5
1,216,368	-		MMJJ_RS06585	0.22	-2.2
1,216,419	-		MMJJ_RS06585	0.26	-0.2
1,216,419	-		MMJJ_RS06585	0.26	-0.6
1,216,514	+		MMJJ_RS06585	0.35	+0.4
1,216,642	-		MMJJ_RS06585	0.46	+1.0
1,216,649	-		MMJJ_RS06585	0.47	+0.1
1,216,649	-		MMJJ_RS06585	0.47	+0.2
1,216,650	+		MMJJ_RS06585	0.47	+0.6
1,216,650	+		MMJJ_RS06585	0.47	+2.2
1,216,658	+				-0.6
1,216,669	-		MMJJ_RS06585	0.49	-0.7
1,216,739	+		MMJJ_RS06585	0.55	+1.1
1,216,749	-		MMJJ_RS06585	0.56	-0.6
1,216,777	-		MMJJ_RS06585	0.58	+0.6
1,216,796	+		MMJJ_RS06585	0.60	+0.8
1,216,843	-		MMJJ_RS06585	0.64	+1.5
1,216,872	-		MMJJ_RS06585	0.67	+0.6
1,216,873	+		MMJJ_RS06585	0.67	+1.4
1,216,873	+		MMJJ_RS06585	0.67	-1.0
1,216,873	+		MMJJ_RS06585	0.67	-0.1
1,216,878	-		MMJJ_RS06585	0.67	+0.1
1,216,878	-		MMJJ_RS06585	0.67	+0.0
1,216,879	+		MMJJ_RS06585	0.67	-0.5
1,216,887	-		MMJJ_RS06585	0.68	+1.0
1,216,887	-		MMJJ_RS06585	0.68	-0.1
1,216,888	+		MMJJ_RS06585	0.68	+0.2
1,216,888	+		MMJJ_RS06585	0.68	-3.2
1,216,920	+		MMJJ_RS06585	0.71	+0.3
1,216,920	+		MMJJ_RS06585	0.71	-1.6
1,216,920	+		MMJJ_RS06585	0.71	-0.9
1,216,976	-		MMJJ_RS06585	0.76	+0.7
1,217,083	-		MMJJ_RS06585	0.85	-2.4
1,217,084	+		MMJJ_RS06585	0.86	+0.6
1,217,090	+		MMJJ_RS06585	0.86	+0.2
1,217,100	-		MMJJ_RS06585	0.87	+0.2
1,217,170	-				+0.5
1,217,188	+				-0.0
1,217,188	+				-0.7
1,217,211	-				-3.2
1,217,211	-				+0.5
1,217,232	-				-0.7
1,217,233	+				+0.1
1,217,233	+				+0.4
1,217,234	-				+1.2
1,217,234	-				-2.6
1,217,234	-				+0.8
1,217,234	-				-1.3
1,217,234	-				-0.2
1,217,234	-				+0.2
1,217,235	+				-0.1
1,217,235	+				+0.2
1,217,238	-				-3.8
1,217,238	-				-0.6
1,217,243	-				+0.2
1,217,243	-				+0.3
1,217,244	+				+0.1
1,217,301	-				-2.1
1,217,306	+				-3.4
1,217,306	+				-0.6
1,217,308	-				-0.8
1,217,308	-				+1.0
1,217,308	-				-0.4
1,217,308	-				+0.3
1,217,309	+				+0.7
1,217,309	+				+1.0
1,217,309	+				+0.4
1,217,314	+				-0.1
1,217,316	+				-0.9
1,217,322	-				-0.5
1,217,322	-				+0.6
1,217,323	+				+0.8
1,217,323	+				-0.6
1,217,323	+				-0.1
1,217,325	+				+0.0
1,217,357	-				+0.1
1,217,377	-				+0.6
1,217,377	-				-0.6
1,217,379	-				-0.4
1,217,379	-				+0.2
1,217,379	-				-0.0
1,217,379	-				-0.5
1,217,379	-				+0.1
1,217,379	-				-1.0
1,217,379	-				+0.9
1,217,380	+				+0.6
1,217,380	+				+0.7
1,217,380	+				-0.0
1,217,380	+				-0.8
1,217,380	+				+1.6
1,217,380	+				-1.4
1,217,395	-				+1.1
1,217,396	+				+0.5
1,217,422	-				-0.4
1,217,423	+				-0.7
1,217,429	-				+1.1
1,217,493	+				+0.1
1,217,498	-				+0.2
1,217,499	+				+0.4
1,217,520	-				-0.2
1,217,520	-				+1.9
1,217,520	-				-1.1
1,217,520	-				-0.0
1,217,520	-				-0.0
1,217,520	-				+0.6
1,217,520	-				-0.6
1,217,521	+				-0.2
1,217,521	+				-1.0
1,217,530	-				-0.4
1,217,558	+				+0.3
1,217,558	+				+0.5
1,217,569	-				+0.5
1,217,605	-				-1.3
1,217,605	-				-2.9
1,217,730	-		MMJJ_RS06590	0.19	+0.2
1,217,730	-		MMJJ_RS06590	0.19	-0.2
1,217,731	+		MMJJ_RS06590	0.19	+0.7
1,217,731	+		MMJJ_RS06590	0.19	+1.0
1,217,731	+				+2.4
1,217,731	+		MMJJ_RS06590	0.19	-0.5
1,217,800	+		MMJJ_RS06590	0.24	+0.6
1,217,800	+		MMJJ_RS06590	0.24	-1.8
1,217,800	+		MMJJ_RS06590	0.24	-3.6
1,217,822	-		MMJJ_RS06590	0.26	+0.2
1,217,823	+		MMJJ_RS06590	0.26	+0.6
1,217,826	-		MMJJ_RS06590	0.26	-0.0
1,217,826	-		MMJJ_RS06590	0.26	+0.1
1,217,827	+		MMJJ_RS06590	0.26	+1.7
1,217,871	-		MMJJ_RS06590	0.30	+0.2
1,217,872	+		MMJJ_RS06590	0.30	-0.9
1,217,872	+		MMJJ_RS06590	0.30	-1.7
1,217,872	+		MMJJ_RS06590	0.30	+0.6
1,217,872	+		MMJJ_RS06590	0.30	-1.8
1,217,967	+		MMJJ_RS06590	0.37	-0.2
1,218,028	-		MMJJ_RS06590	0.41	+0.1
1,218,028	-		MMJJ_RS06590	0.41	+1.1
1,218,032	-		MMJJ_RS06590	0.41	+1.1
1,218,068	-		MMJJ_RS06590	0.44	+0.6
1,218,069	+		MMJJ_RS06590	0.44	+0.2
1,218,083	-		MMJJ_RS06590	0.45	+0.7
1,218,083	-		MMJJ_RS06590	0.45	-0.2
1,218,084	+		MMJJ_RS06590	0.45	-0.5
1,218,101	-		MMJJ_RS06590	0.46	-4.2
1,218,107	-		MMJJ_RS06590	0.47	+0.0
1,218,139	-		MMJJ_RS06590	0.49	+0.7
1,218,140	+		MMJJ_RS06590	0.49	-1.5
1,218,171	+		MMJJ_RS06590	0.52	+0.3
1,218,182	-		MMJJ_RS06590	0.52	+0.4
1,218,203	+		MMJJ_RS06590	0.54	+0.3
1,218,203	+		MMJJ_RS06590	0.54	-1.1
1,218,244	-		MMJJ_RS06590	0.57	-0.5
1,218,244	-		MMJJ_RS06590	0.57	-1.5
1,218,245	+		MMJJ_RS06590	0.57	+0.5