Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06495

Experiment: McCas-formate glass attached

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS06490 and MMJJ_RS06495 are separated by 9 nucleotidesMMJJ_RS06495 and MMJJ_RS06500 overlap by 4 nucleotidesMMJJ_RS06500 and MMJJ_RS06505 overlap by 4 nucleotides MMJJ_RS06490: MMJJ_RS06490 - methanogenesis marker 2 protein, at 1,197,534 to 1,198,505 _RS06490 MMJJ_RS06495: MMJJ_RS06495 - hypothetical protein, at 1,198,515 to 1,198,805 _RS06495 MMJJ_RS06500: MMJJ_RS06500 - class I SAM-dependent methyltransferase, at 1,198,802 to 1,199,512 _RS06500 MMJJ_RS06505: MMJJ_RS06505 - prephenate dehydratase, at 1,199,509 to 1,200,315 _RS06505 Position (kb) 1198 1199Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 1197.647 kb on - strand, within MMJJ_RS06490at 1197.656 kb on + strand, within MMJJ_RS06490at 1197.836 kb on - strand, within MMJJ_RS06490at 1197.847 kb on - strand, within MMJJ_RS06490at 1197.962 kb on + strandat 1198.119 kb on - strandat 1198.181 kb on - strand, within MMJJ_RS06490at 1198.189 kb on - strand, within MMJJ_RS06490at 1198.265 kb on - strandat 1198.333 kb on - strand, within MMJJ_RS06490at 1198.482 kb on + strandat 1198.488 kb on - strandat 1198.488 kb on - strandat 1198.488 kb on - strandat 1198.489 kb on + strandat 1198.489 kb on + strandat 1198.528 kb on - strandat 1198.528 kb on - strandat 1198.528 kb on - strandat 1198.528 kb on - strandat 1198.528 kb on - strandat 1198.528 kb on - strandat 1198.529 kb on + strandat 1198.538 kb on + strandat 1198.542 kb on - strandat 1198.559 kb on + strand, within MMJJ_RS06495at 1198.665 kb on - strand, within MMJJ_RS06495at 1198.711 kb on - strand, within MMJJ_RS06495at 1198.726 kb on - strand, within MMJJ_RS06495at 1198.751 kb on + strand, within MMJJ_RS06495at 1198.772 kb on - strand, within MMJJ_RS06495at 1198.787 kb on - strandat 1198.787 kb on - strandat 1198.827 kb on - strandat 1198.863 kb on + strandat 1198.868 kb on + strandat 1198.875 kb on - strand, within MMJJ_RS06500at 1198.876 kb on + strand, within MMJJ_RS06500at 1198.885 kb on + strand, within MMJJ_RS06500at 1198.967 kb on + strand, within MMJJ_RS06500at 1198.969 kb on - strand, within MMJJ_RS06500at 1198.969 kb on - strand, within MMJJ_RS06500at 1198.975 kb on + strand, within MMJJ_RS06500at 1199.007 kb on + strand, within MMJJ_RS06500at 1199.014 kb on + strand, within MMJJ_RS06500at 1199.014 kb on + strand, within MMJJ_RS06500at 1199.030 kb on + strand, within MMJJ_RS06500at 1199.036 kb on - strand, within MMJJ_RS06500at 1199.037 kb on + strand, within MMJJ_RS06500at 1199.072 kb on + strand, within MMJJ_RS06500at 1199.119 kb on - strand, within MMJJ_RS06500at 1199.119 kb on - strand, within MMJJ_RS06500at 1199.119 kb on - strand, within MMJJ_RS06500at 1199.120 kb on + strand, within MMJJ_RS06500at 1199.228 kb on - strand, within MMJJ_RS06500at 1199.239 kb on + strand, within MMJJ_RS06500at 1199.241 kb on - strand, within MMJJ_RS06500at 1199.242 kb on + strand, within MMJJ_RS06500at 1199.408 kb on + strand, within MMJJ_RS06500at 1199.412 kb on - strand, within MMJJ_RS06500

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas-formate glass attached
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1,197,647 - MMJJ_RS06490 0.12 -2.9
1,197,656 + MMJJ_RS06490 0.13 +1.2
1,197,836 - MMJJ_RS06490 0.31 +0.6
1,197,847 - MMJJ_RS06490 0.32 -0.4
1,197,962 + -0.6
1,198,119 - +1.2
1,198,181 - MMJJ_RS06490 0.67 +2.2
1,198,189 - MMJJ_RS06490 0.67 -0.6
1,198,265 - +3.4
1,198,333 - MMJJ_RS06490 0.82 -1.0
1,198,482 + -2.5
1,198,488 - -0.0
1,198,488 - -5.0
1,198,488 - -0.4
1,198,489 + -5.0
1,198,489 + -3.1
1,198,528 - +0.5
1,198,528 - +1.5
1,198,528 - +0.3
1,198,528 - +0.3
1,198,528 - +0.6
1,198,528 - +1.0
1,198,529 + +0.9
1,198,538 + +0.1
1,198,542 - +0.8
1,198,559 + MMJJ_RS06495 0.15 -1.0
1,198,665 - MMJJ_RS06495 0.52 +1.8
1,198,711 - MMJJ_RS06495 0.67 +0.2
1,198,726 - MMJJ_RS06495 0.73 +0.2
1,198,751 + MMJJ_RS06495 0.81 +0.7
1,198,772 - MMJJ_RS06495 0.88 -0.3
1,198,787 - +0.4
1,198,787 - +0.5
1,198,827 - -0.6
1,198,863 + +0.2
1,198,868 + +0.8
1,198,875 - MMJJ_RS06500 0.10 +0.4
1,198,876 + MMJJ_RS06500 0.10 -0.8
1,198,885 + MMJJ_RS06500 0.12 +0.4
1,198,967 + MMJJ_RS06500 0.23 -0.5
1,198,969 - MMJJ_RS06500 0.23 +0.5
1,198,969 - MMJJ_RS06500 0.23 -0.5
1,198,975 + MMJJ_RS06500 0.24 +0.4
1,199,007 + MMJJ_RS06500 0.29 -2.6
1,199,014 + MMJJ_RS06500 0.30 +0.8
1,199,014 + MMJJ_RS06500 0.30 +0.5
1,199,030 + MMJJ_RS06500 0.32 +0.1
1,199,036 - MMJJ_RS06500 0.33 -0.1
1,199,037 + MMJJ_RS06500 0.33 +0.3
1,199,072 + MMJJ_RS06500 0.38 -5.4
1,199,119 - MMJJ_RS06500 0.45 +0.9
1,199,119 - MMJJ_RS06500 0.45 -0.4
1,199,119 - MMJJ_RS06500 0.45 -1.1
1,199,120 + MMJJ_RS06500 0.45 +0.4
1,199,228 - MMJJ_RS06500 0.60 +0.4
1,199,239 + MMJJ_RS06500 0.61 +0.4
1,199,241 - MMJJ_RS06500 0.62 -1.5
1,199,242 + MMJJ_RS06500 0.62 -1.9
1,199,408 + MMJJ_RS06500 0.85 -2.1
1,199,412 - MMJJ_RS06500 0.86 +0.6

Or see this region's nucleotide sequence