Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06450

Experiment: McCas-formate glass attached

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas-formate glass attached
1,190,176	+		MMJJ_RS06440	0.50	-0.6
1,190,194	-		MMJJ_RS06440	0.55	-1.4
1,190,195	+		MMJJ_RS06440	0.56	+0.3
1,190,195	+		MMJJ_RS06440	0.56	+0.3
1,190,260	+		MMJJ_RS06440	0.76	-0.5
1,190,260	+		MMJJ_RS06440	0.76	-0.4
1,190,269	+		MMJJ_RS06440	0.79	+0.1
1,190,292	+		MMJJ_RS06440	0.86	-0.4
1,190,292	+		MMJJ_RS06440	0.86	+0.5
1,190,303	+		MMJJ_RS06440	0.90	+0.4
1,190,350	-				+0.4
1,190,356	+				+0.8
1,190,359	+				-0.4
1,190,360	-				+0.8
1,190,360	-				-0.0
1,190,360	-				+0.4
1,190,360	-				+0.3
1,190,360	-				+0.0
1,190,360	-				-2.6
1,190,361	+				-1.6
1,190,361	+				-0.4
1,190,361	+				-0.6
1,190,453	+		MMJJ_RS06445	0.12	+1.1
1,190,453	+		MMJJ_RS06445	0.12	+0.9
1,190,461	-		MMJJ_RS06445	0.13	-0.6
1,190,461	-		MMJJ_RS06445	0.13	+0.8
1,190,471	-		MMJJ_RS06445	0.14	+0.9
1,190,471	-		MMJJ_RS06445	0.14	+0.7
1,190,472	+		MMJJ_RS06445	0.14	+0.2
1,190,472	+		MMJJ_RS06445	0.14	+0.8
1,190,492	+		MMJJ_RS06445	0.16	+0.1
1,190,518	-		MMJJ_RS06445	0.20	-1.5
1,190,591	-		MMJJ_RS06445	0.28	+0.1
1,190,591	-		MMJJ_RS06445	0.28	+0.5
1,190,591	-		MMJJ_RS06445	0.28	-0.6
1,190,591	-		MMJJ_RS06445	0.28	+0.5
1,190,591	-		MMJJ_RS06445	0.28	-1.9
1,190,591	-		MMJJ_RS06445	0.28	+0.1
1,190,592	+		MMJJ_RS06445	0.29	+0.6
1,190,592	+		MMJJ_RS06445	0.29	+1.0
1,190,592	+		MMJJ_RS06445	0.29	+0.3
1,190,592	+		MMJJ_RS06445	0.29	+0.5
1,190,596	-		MMJJ_RS06445	0.29	-1.1
1,190,597	+		MMJJ_RS06445	0.29	-0.3
1,190,597	+		MMJJ_RS06445	0.29	-0.5
1,190,597	+		MMJJ_RS06445	0.29	+0.3
1,190,609	-		MMJJ_RS06445	0.31	+1.2
1,190,610	+		MMJJ_RS06445	0.31	-0.2
1,190,610	+		MMJJ_RS06445	0.31	-0.5
1,190,615	+		MMJJ_RS06445	0.31	-0.9
1,190,623	-		MMJJ_RS06445	0.32	+0.1
1,190,623	-		MMJJ_RS06445	0.32	+0.2
1,190,623	-		MMJJ_RS06445	0.32	-4.1
1,190,624	+		MMJJ_RS06445	0.32	+0.2
1,190,624	+		MMJJ_RS06445	0.32	+0.4
1,190,624	+		MMJJ_RS06445	0.32	-2.2
1,190,633	-		MMJJ_RS06445	0.34	-3.3
1,190,633	-		MMJJ_RS06445	0.34	+0.1
1,190,634	+		MMJJ_RS06445	0.34	-0.5
1,190,634	+		MMJJ_RS06445	0.34	+0.5
1,190,662	-		MMJJ_RS06445	0.37	+0.3
1,190,662	-		MMJJ_RS06445	0.37	+0.1
1,190,662	-		MMJJ_RS06445	0.37	-2.9
1,190,662	-		MMJJ_RS06445	0.37	+0.6
1,190,662	-		MMJJ_RS06445	0.37	+0.6
1,190,662	-		MMJJ_RS06445	0.37	-1.9
1,190,662	-		MMJJ_RS06445	0.37	+0.8
1,190,663	+		MMJJ_RS06445	0.37	+0.2
1,190,663	+		MMJJ_RS06445	0.37	+0.2
1,190,663	+		MMJJ_RS06445	0.37	+0.7
1,190,663	+		MMJJ_RS06445	0.37	-0.3
1,190,664	-		MMJJ_RS06445	0.37	-0.1
1,190,665	+		MMJJ_RS06445	0.37	+0.3
1,190,665	+		MMJJ_RS06445	0.37	+0.1
1,190,665	+		MMJJ_RS06445	0.37	+1.2
1,190,713	-		MMJJ_RS06445	0.43	-0.9
1,190,723	-		MMJJ_RS06445	0.45	-0.7
1,190,723	-		MMJJ_RS06445	0.45	+0.1
1,190,723	-		MMJJ_RS06445	0.45	+0.5
1,190,723	-		MMJJ_RS06445	0.45	+1.6
1,190,723	-		MMJJ_RS06445	0.45	-0.2
1,190,723	-		MMJJ_RS06445	0.45	+1.1
1,190,723	-		MMJJ_RS06445	0.45	+0.9
1,190,723	-		MMJJ_RS06445	0.45	-0.1
1,190,724	+		MMJJ_RS06445	0.45	+1.6
1,190,724	+		MMJJ_RS06445	0.45	+0.6
1,190,724	+		MMJJ_RS06445	0.45	+0.3
1,190,727	-		MMJJ_RS06445	0.45	+0.9
1,190,727	-		MMJJ_RS06445	0.45	+1.4
1,190,727	-		MMJJ_RS06445	0.45	+0.2
1,190,727	-		MMJJ_RS06445	0.45	+0.9
1,190,727	-		MMJJ_RS06445	0.45	-1.4
1,190,728	+		MMJJ_RS06445	0.45	-0.1
1,190,800	-		MMJJ_RS06445	0.54	-0.2
1,190,829	-		MMJJ_RS06445	0.57	+0.5
1,190,829	-		MMJJ_RS06445	0.57	-0.0
1,190,829	-		MMJJ_RS06445	0.57	+0.5
1,190,829	-		MMJJ_RS06445	0.57	+0.8
1,190,830	+		MMJJ_RS06445	0.58	-1.5
1,190,830	+		MMJJ_RS06445	0.58	+0.5
1,190,830	+		MMJJ_RS06445	0.58	+0.8
1,190,876	+		MMJJ_RS06445	0.63	+0.8
1,190,879	+		MMJJ_RS06445	0.64	-0.6
1,190,900	-		MMJJ_RS06445	0.66	+1.0
1,190,900	-		MMJJ_RS06445	0.66	-0.5
1,190,900	-		MMJJ_RS06445	0.66	+0.9
1,190,900	-		MMJJ_RS06445	0.66	+1.0
1,190,900	-		MMJJ_RS06445	0.66	+0.3
1,190,901	+		MMJJ_RS06445	0.66	-1.5
1,190,901	+		MMJJ_RS06445	0.66	+1.1
1,190,901	+		MMJJ_RS06445	0.66	-0.2
1,190,901	+		MMJJ_RS06445	0.66	-4.1
1,190,905	+		MMJJ_RS06445	0.67	+0.3
1,190,911	-		MMJJ_RS06445	0.67	+1.1
1,190,911	-		MMJJ_RS06445	0.67	-0.4
1,190,911	-		MMJJ_RS06445	0.67	+0.4
1,190,912	+		MMJJ_RS06445	0.68	-1.6
1,190,912	+		MMJJ_RS06445	0.68	+0.6
1,190,929	-		MMJJ_RS06445	0.70	-2.7
1,190,929	-		MMJJ_RS06445	0.70	-0.6
1,190,958	+		MMJJ_RS06445	0.73	+0.1
1,190,980	-		MMJJ_RS06445	0.76	+0.3
1,191,070	-		MMJJ_RS06445	0.87	-0.5
1,191,070	-		MMJJ_RS06445	0.87	+0.0
1,191,071	+		MMJJ_RS06445	0.87	+0.2
1,191,071	+		MMJJ_RS06445	0.87	+0.5
1,191,075	+		MMJJ_RS06445	0.87	-0.7
1,191,088	-		MMJJ_RS06445	0.89	-0.1
1,191,107	+				+0.9
1,191,113	+				+0.1
1,191,136	-				-0.1
1,191,136	-				-0.1
1,191,136	-				+0.3
1,191,136	-				+0.8
1,191,136	-				-0.8
1,191,137	+				+1.1
1,191,137	+				-0.2
1,191,158	-				-0.5
1,191,172	-				-0.2
1,191,233	-		MMJJ_RS06450	0.10	+1.1
1,191,233	-		MMJJ_RS06450	0.10	+1.1
1,191,233	-		MMJJ_RS06450	0.10	-2.9
1,191,234	+		MMJJ_RS06450	0.11	+0.4
1,191,280	-		MMJJ_RS06450	0.19	-0.3
1,191,280	-		MMJJ_RS06450	0.19	-0.0
1,191,286	-		MMJJ_RS06450	0.20	+0.1
1,191,292	+		MMJJ_RS06450	0.21	+0.2
1,191,305	+		MMJJ_RS06450	0.23	+0.6
1,191,403	-		MMJJ_RS06450	0.41	-1.6
1,191,404	+		MMJJ_RS06450	0.41	+1.1
1,191,469	-		MMJJ_RS06450	0.52	-0.1
1,191,469	-		MMJJ_RS06450	0.52	-1.6
1,191,469	-		MMJJ_RS06450	0.52	+0.2
1,191,469	-		MMJJ_RS06450	0.52	+0.2
1,191,470	+		MMJJ_RS06450	0.53	-2.3
1,191,470	+		MMJJ_RS06450	0.53	-3.7
1,191,470	+		MMJJ_RS06450	0.53	+1.0
1,191,483	-		MMJJ_RS06450	0.55	+1.0
1,191,484	+		MMJJ_RS06450	0.55	+0.1
1,191,493	-		MMJJ_RS06450	0.57	+0.2
1,191,493	-		MMJJ_RS06450	0.57	-4.8
1,191,494	+		MMJJ_RS06450	0.57	-3.9
1,191,499	+		MMJJ_RS06450	0.58	-0.1
1,191,520	+		MMJJ_RS06450	0.61	-0.0
1,191,535	-		MMJJ_RS06450	0.64	+0.8
1,191,545	-		MMJJ_RS06450	0.66	+0.7
1,191,546	+		MMJJ_RS06450	0.66	+0.8
1,191,546	+		MMJJ_RS06450	0.66	+0.1
1,191,556	-		MMJJ_RS06450	0.68	+0.3
1,191,556	-		MMJJ_RS06450	0.68	-2.9
1,191,556	-		MMJJ_RS06450	0.68	+0.4
1,191,557	+		MMJJ_RS06450	0.68	-0.2
1,191,574	-		MMJJ_RS06450	0.71	+1.0
1,191,593	+		MMJJ_RS06450	0.75	+1.1
1,191,601	-		MMJJ_RS06450	0.76	-0.8
1,191,635	+		MMJJ_RS06450	0.82	-0.1
1,191,646	-		MMJJ_RS06450	0.84	+1.6
1,191,647	+		MMJJ_RS06450	0.84	-0.4
1,191,655	+		MMJJ_RS06450	0.86	-0.3
1,191,658	-		MMJJ_RS06450	0.86	+0.1
1,191,659	+		MMJJ_RS06450	0.86	+0.3
1,191,659	+		MMJJ_RS06450	0.86	+1.3
1,191,662	+		MMJJ_RS06450	0.87	+0.3
1,191,662	+		MMJJ_RS06450	0.87	+1.0
1,191,662	+		MMJJ_RS06450	0.87	+1.1
1,191,664	-		MMJJ_RS06450	0.87	-1.1
1,191,665	+		MMJJ_RS06450	0.87	-3.2
1,191,700	-				+0.1
1,191,701	+				-0.5
1,191,701	+				-0.2
1,191,781	-				-0.9
1,191,785	-				-0.4
1,191,785	-				+0.1
1,191,785	-				-2.8
1,191,785	-				-0.9
1,191,786	+				+0.9
1,191,787	-				-0.1
1,191,787	-				-0.0
1,191,787	-				-1.8
1,191,787	-				-2.6
1,191,788	+				-0.3
1,191,788	+				+0.6
1,191,788	+				+3.0
1,191,788	+				+0.7
1,191,788	+				+1.8
1,191,791	-				-0.1
1,191,791	-				+0.8
1,191,791	-				+2.0
1,191,791	-				+0.3
1,191,798	-				+1.0
1,191,804	+				-3.8
1,191,842	-				+0.5
1,191,843	+				+0.9
1,191,843	+				+0.4
1,191,843	+				-0.8
1,191,845	-		MMJJ_RS06455	0.10	+1.6
1,191,845	-		MMJJ_RS06455	0.10	-2.3
1,191,845	-		MMJJ_RS06455	0.10	+0.3
1,191,845	-		MMJJ_RS06455	0.10	+0.2
1,191,845	-		MMJJ_RS06455	0.10	-0.5
1,191,846	+		MMJJ_RS06455	0.10	-2.8
1,191,846	+		MMJJ_RS06455	0.10	-0.7
1,191,869	-		MMJJ_RS06455	0.15	-3.5
1,191,870	+		MMJJ_RS06455	0.15	-0.0
1,191,870	+		MMJJ_RS06455	0.15	-1.0
1,191,873	-		MMJJ_RS06455	0.16	+0.8
1,191,873	-		MMJJ_RS06455	0.16	+1.4
1,191,873	-		MMJJ_RS06455	0.16	+1.3
1,191,873	-		MMJJ_RS06455	0.16	-0.5
1,191,874	+		MMJJ_RS06455	0.16	+0.1
1,191,874	+		MMJJ_RS06455	0.16	+0.5
1,191,912	-		MMJJ_RS06455	0.24	-4.2
1,191,912	-		MMJJ_RS06455	0.24	+0.4
1,191,912	-		MMJJ_RS06455	0.24	+1.0
1,191,912	-		MMJJ_RS06455	0.24	-0.8
1,191,913	+		MMJJ_RS06455	0.25	+0.6
1,191,913	+		MMJJ_RS06455	0.25	+0.1
1,191,980	+		MMJJ_RS06455	0.39	+0.6
1,191,983	-		MMJJ_RS06455	0.39	-0.5
1,191,983	-		MMJJ_RS06455	0.39	-1.5
1,191,983	-		MMJJ_RS06455	0.39	-0.2
1,191,984	+		MMJJ_RS06455	0.40	+0.1
1,191,984	+		MMJJ_RS06455	0.40	+0.2
1,192,005	+		MMJJ_RS06455	0.44	+0.9
1,192,091	-		MMJJ_RS06455	0.62	-0.5
1,192,092	+		MMJJ_RS06455	0.63	-2.0
1,192,093	-		MMJJ_RS06455	0.63	+0.6
1,192,093	-		MMJJ_RS06455	0.63	+0.6
1,192,106	-		MMJJ_RS06455	0.66	-0.4
1,192,106	-		MMJJ_RS06455	0.66	-0.1
1,192,106	-		MMJJ_RS06455	0.66	-0.6
1,192,107	+		MMJJ_RS06455	0.66	+0.9
1,192,138	-		MMJJ_RS06455	0.72	+0.5
1,192,142	-		MMJJ_RS06455	0.73	+1.0
1,192,142	-		MMJJ_RS06455	0.73	+0.3
1,192,143	+		MMJJ_RS06455	0.73	-3.2
1,192,150	-		MMJJ_RS06455	0.75	-0.2
1,192,150	-		MMJJ_RS06455	0.75	+0.6
1,192,151	+		MMJJ_RS06455	0.75	-2.3
1,192,151	+		MMJJ_RS06455	0.75	-1.4
1,192,164	-		MMJJ_RS06455	0.78	-1.2
1,192,165	+		MMJJ_RS06455	0.78	+0.4
1,192,165	+		MMJJ_RS06455	0.78	+1.5
1,192,167	-		MMJJ_RS06455	0.79	+0.1
1,192,167	-		MMJJ_RS06455	0.79	-0.2
1,192,168	+		MMJJ_RS06455	0.79	-0.9
1,192,177	-		MMJJ_RS06455	0.81	+1.9
1,192,212	+		MMJJ_RS06455	0.88	+1.2
1,192,215	-		MMJJ_RS06455	0.89	+0.2
1,192,216	+		MMJJ_RS06455	0.89	+0.5
1,192,216	+		MMJJ_RS06455	0.89	-0.2
1,192,221	+				+0.8
1,192,260	-				+0.1
1,192,308	-				+0.3
1,192,308	-				-1.7
1,192,309	+				+0.0
1,192,317	+				+0.1
1,192,345	-		MMJJ_RS06460	0.12	-2.9
1,192,387	+		MMJJ_RS06460	0.21	+1.0
1,192,397	-		MMJJ_RS06460	0.23	-0.2
1,192,397	-		MMJJ_RS06460	0.23	+1.2
1,192,416	-		MMJJ_RS06460	0.28	-0.6
1,192,434	-		MMJJ_RS06460	0.32	-0.3
1,192,437	-		MMJJ_RS06460	0.32	+0.5
1,192,438	+		MMJJ_RS06460	0.32	-0.6
1,192,449	-		MMJJ_RS06460	0.35	-1.9
1,192,449	-		MMJJ_RS06460	0.35	-4.0
1,192,449	-		MMJJ_RS06460	0.35	+1.0
1,192,464	-		MMJJ_RS06460	0.38	-4.4
1,192,515	-		MMJJ_RS06460	0.49	+1.3
1,192,527	-		MMJJ_RS06460	0.52	+0.8
1,192,545	-		MMJJ_RS06460	0.56	-0.2
1,192,558	+		MMJJ_RS06460	0.59	-0.2
1,192,581	-		MMJJ_RS06460	0.64	-1.3
1,192,606	+		MMJJ_RS06460	0.69	+0.1
1,192,655	+		MMJJ_RS06460	0.80	+0.5
1,192,671	-		MMJJ_RS06460	0.84	+0.7
1,192,672	+		MMJJ_RS06460	0.84	+0.2
1,192,672	+		MMJJ_RS06460	0.84	+0.9
1,192,672	+		MMJJ_RS06460	0.84	-0.1
1,192,672	+		MMJJ_RS06460	0.84	+0.1
1,192,677	+		MMJJ_RS06460	0.85	-0.2
1,192,695	-		MMJJ_RS06460	0.89	-0.6
1,192,695	-		MMJJ_RS06460	0.89	-0.4
1,192,696	+		MMJJ_RS06460	0.89	+0.4