Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06285

Experiment: McCas-formate glass attached

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas-formate glass attached
1,165,453	+				+0.9
1,165,453	+				+0.4
1,165,453	+				-0.1
1,165,453	+				+0.2
1,165,454	-				-1.0
1,165,454	-				+1.0
1,165,454	-				+0.1
1,165,454	-				+1.4
1,165,455	+				-0.2
1,165,455	+				-2.0
1,165,455	+				+0.3
1,165,455	+				+0.7
1,165,458	-				-0.2
1,165,458	-				-0.9
1,165,458	-				-0.3
1,165,458	-				-1.2
1,165,458	-				-0.2
1,165,482	+				+1.8
1,165,484	+				-0.0
1,165,484	+				+0.3
1,165,484	+				-0.2
1,165,484	+				-0.6
1,165,484	+				+1.1
1,165,488	+				+1.2
1,165,505	-				+1.1
1,165,515	+				-4.2
1,165,517	-				-1.8
1,165,517	-				+0.1
1,165,517	-				+0.5
1,165,518	+				+0.8
1,165,518	+				+0.2
1,165,554	-				-2.6
1,165,554	-				+0.5
1,165,579	-				+1.2
1,165,579	-				-1.6
1,165,580	+				-1.3
1,165,580	+				-3.2
1,165,593	-				+0.5
1,165,593	-				-0.1
1,165,594	+				-0.2
1,165,594	+				-0.2
1,165,601	+				+1.0
1,165,644	-		MMJJ_RS06280	0.14	-0.0
1,165,644	-		MMJJ_RS06280	0.14	+0.4
1,165,645	+		MMJJ_RS06280	0.15	-0.7
1,165,645	+		MMJJ_RS06280	0.15	+0.5
1,165,645	+		MMJJ_RS06280	0.15	-0.8
1,165,687	-		MMJJ_RS06280	0.19	+0.8
1,165,687	-		MMJJ_RS06280	0.19	+0.2
1,165,768	-		MMJJ_RS06280	0.28	-0.3
1,165,834	-		MMJJ_RS06280	0.35	-0.2
1,165,839	-		MMJJ_RS06280	0.35	+1.0
1,165,843	+		MMJJ_RS06280	0.36	+0.1
1,165,843	+		MMJJ_RS06280	0.36	-0.8
1,165,845	+		MMJJ_RS06280	0.36	-0.3
1,165,845	+		MMJJ_RS06280	0.36	+0.6
1,165,868	+		MMJJ_RS06280	0.38	+0.9
1,165,872	-		MMJJ_RS06280	0.39	-0.0
1,165,874	-		MMJJ_RS06280	0.39	+0.7
1,165,875	+		MMJJ_RS06280	0.39	+0.3
1,165,926	+		MMJJ_RS06280	0.45	-0.1
1,165,926	+		MMJJ_RS06280	0.45	-0.3
1,165,927	-		MMJJ_RS06280	0.45	-0.1
1,165,951	-		MMJJ_RS06280	0.47	+1.0
1,165,952	+		MMJJ_RS06280	0.47	-0.1
1,165,994	-		MMJJ_RS06280	0.52	-0.1
1,165,995	+		MMJJ_RS06280	0.52	-0.4
1,165,995	+		MMJJ_RS06280	0.52	-1.9
1,166,004	+		MMJJ_RS06280	0.53	-0.5
1,166,067	+		MMJJ_RS06280	0.60	-0.7
1,166,089	+		MMJJ_RS06280	0.62	+1.6
1,166,195	+		MMJJ_RS06280	0.73	-1.1
1,166,195	+		MMJJ_RS06280	0.73	+0.6
1,166,197	-		MMJJ_RS06280	0.74	+0.1
1,166,197	-		MMJJ_RS06280	0.74	-0.3
1,166,198	+		MMJJ_RS06280	0.74	-3.2
1,166,198	+		MMJJ_RS06280	0.74	+0.7
1,166,198	+		MMJJ_RS06280	0.74	-0.7
1,166,236	-		MMJJ_RS06280	0.78	-0.3
1,166,237	+		MMJJ_RS06280	0.78	+0.2
1,166,251	-		MMJJ_RS06280	0.79	-0.0
1,166,270	+		MMJJ_RS06280	0.81	+0.3
1,166,280	+		MMJJ_RS06280	0.82	+0.2
1,166,281	-		MMJJ_RS06280	0.82	+1.0
1,166,282	+		MMJJ_RS06280	0.83	+0.2
1,166,291	-		MMJJ_RS06280	0.84	-0.8
1,166,291	-		MMJJ_RS06280	0.84	-0.3
1,166,317	-		MMJJ_RS06280	0.86	-0.5
1,166,358	+				-3.1
1,166,367	+				-0.5
1,166,374	-				+1.3
1,166,396	-				-1.6
1,166,396	-				-0.3
1,166,397	+				-1.1
1,166,411	-				-1.0
1,166,422	-				+0.7
1,166,422	-				+0.3
1,166,423	+				+1.1
1,166,442	-				-0.6
1,166,471	+				+0.1
1,166,471	+				-0.0
1,166,475	+				-0.7
1,166,475	+				+0.2
1,166,475	+				+0.1
1,166,516	+				+0.2
1,166,516	+				+0.1
1,166,531	+		MMJJ_RS06285	0.10	-0.2
1,166,535	-		MMJJ_RS06285	0.11	+0.4
1,166,535	-		MMJJ_RS06285	0.11	-0.4
1,166,536	+		MMJJ_RS06285	0.11	+1.6
1,166,536	+		MMJJ_RS06285	0.11	-0.4
1,166,539	-		MMJJ_RS06285	0.11	-1.6
1,166,569	+		MMJJ_RS06285	0.15	-1.0
1,166,586	-		MMJJ_RS06285	0.18	-1.0
1,166,591	+		MMJJ_RS06285	0.18	-0.5
1,166,591	+		MMJJ_RS06285	0.18	-0.2
1,166,613	-		MMJJ_RS06285	0.21	+0.5
1,166,624	-		MMJJ_RS06285	0.23	+1.1
1,166,634	+		MMJJ_RS06285	0.24	+1.0
1,166,637	-		MMJJ_RS06285	0.24	-0.5
1,166,638	+		MMJJ_RS06285	0.24	-0.0
1,166,638	+		MMJJ_RS06285	0.24	-1.1
1,166,644	+		MMJJ_RS06285	0.25	-2.0
1,166,666	+		MMJJ_RS06285	0.28	-2.5
1,166,677	-		MMJJ_RS06285	0.30	+0.7
1,166,698	-		MMJJ_RS06285	0.32	-0.4
1,166,705	+		MMJJ_RS06285	0.33	+2.7
1,166,791	+		MMJJ_RS06285	0.45	-0.3
1,166,827	-				-0.4
1,166,970	+		MMJJ_RS06285	0.68	-0.5
1,166,974	-		MMJJ_RS06285	0.69	+1.3
1,166,975	+		MMJJ_RS06285	0.69	+0.7
1,166,982	-		MMJJ_RS06285	0.70	+0.6
1,166,982	-		MMJJ_RS06285	0.70	+0.1
1,167,022	+		MMJJ_RS06285	0.75	+0.9
1,167,052	-		MMJJ_RS06285	0.79	+0.6
1,167,052	-		MMJJ_RS06285	0.79	+1.0
1,167,052	-		MMJJ_RS06285	0.79	+1.2
1,167,146	-				+0.1
1,167,146	-				-0.5
1,167,176	-				-0.2
1,167,176	-				-0.2
1,167,176	-				-3.5
1,167,176	-				+0.1
1,167,177	+				-1.8
1,167,177	+				-1.9
1,167,195	-				-0.1
1,167,195	-				-1.4
1,167,195	-				+0.7
1,167,195	-				-3.1
1,167,196	+				+0.7
1,167,198	+				-2.1
1,167,198	+				+0.3
1,167,202	-				+0.5
1,167,215	-				+1.5
1,167,251	-		MMJJ_RS06290	0.10	-0.5
1,167,352	-		MMJJ_RS06290	0.43	-0.0
1,167,357	+		MMJJ_RS06290	0.45	+0.4
1,167,357	+		MMJJ_RS06290	0.45	-1.2
1,167,371	-		MMJJ_RS06290	0.49	+2.0
1,167,371	-		MMJJ_RS06290	0.49	+0.5
1,167,372	+		MMJJ_RS06290	0.50	+0.6
1,167,387	-		MMJJ_RS06290	0.54	-1.9
1,167,387	-		MMJJ_RS06290	0.54	+0.2
1,167,387	-		MMJJ_RS06290	0.54	-0.1
1,167,395	+		MMJJ_RS06290	0.57	+0.2
1,167,441	-		MMJJ_RS06290	0.72	-0.5
1,167,486	-		MMJJ_RS06290	0.86	+0.0
1,167,490	-		MMJJ_RS06290	0.88	+1.0
1,167,491	+		MMJJ_RS06290	0.88	+0.2
1,167,503	-				-1.0
1,167,539	-				-2.3
1,167,539	-				+0.4
1,167,542	-				-1.5
1,167,543	+				+0.7
1,167,543	+				+0.6
1,167,570	-		MMJJ_RS06295	0.12	+2.6
1,167,630	-		MMJJ_RS06295	0.23	+0.5
1,167,630	-		MMJJ_RS06295	0.23	+0.7
1,167,630	-		MMJJ_RS06295	0.23	+0.9
1,167,630	-		MMJJ_RS06295	0.23	+0.7
1,167,630	-		MMJJ_RS06295	0.23	-1.0
1,167,635	+		MMJJ_RS06295	0.24	-2.4
1,167,637	-		MMJJ_RS06295	0.25	+0.1
1,167,642	+		MMJJ_RS06295	0.26	-2.5
1,167,707	-		MMJJ_RS06295	0.38	-1.9
1,167,707	-		MMJJ_RS06295	0.38	+0.8
1,167,708	+		MMJJ_RS06295	0.38	+0.7
1,167,708	+		MMJJ_RS06295	0.38	-2.7
1,167,857	-		MMJJ_RS06295	0.66	-1.0
1,167,863	-		MMJJ_RS06295	0.67	-1.0
1,167,864	+		MMJJ_RS06295	0.67	-1.1
1,167,864	+		MMJJ_RS06295	0.67	-4.5
1,167,867	-		MMJJ_RS06295	0.68	-0.7
1,167,867	-		MMJJ_RS06295	0.68	+0.4
1,167,868	+		MMJJ_RS06295	0.68	-0.4
1,167,868	+		MMJJ_RS06295	0.68	+0.2
1,167,876	+		MMJJ_RS06295	0.69	-5.0
1,167,915	-		MMJJ_RS06295	0.77	-0.8
1,167,923	-		MMJJ_RS06295	0.78	-1.8
1,167,924	+		MMJJ_RS06295	0.78	-3.8
1,167,926	-		MMJJ_RS06295	0.79	+0.6
1,167,926	-		MMJJ_RS06295	0.79	+0.4
1,167,927	+		MMJJ_RS06295	0.79	+0.4
1,168,056	+				+0.5
1,168,056	+				-0.1
1,168,057	-				-0.7
1,168,057	-				+0.3
1,168,057	-				-0.7
1,168,057	-				+0.2
1,168,057	-				+0.9
1,168,058	+				-1.5
1,168,058	+				-0.8
1,168,123	+				+1.1
1,168,127	+				+0.1
1,168,127	+				-0.3