Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06015

Experiment: McCas-formate glass attached

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas-formate glass attached
1,117,556	+		MMJJ_RS06005	0.61	+0.9
1,117,566	+		MMJJ_RS06005	0.62	+1.7
1,117,579	-		MMJJ_RS06005	0.63	+0.5
1,117,580	+		MMJJ_RS06005	0.63	+1.9
1,117,632	+		MMJJ_RS06005	0.66	+0.5
1,117,658	+		MMJJ_RS06005	0.68	+1.5
1,117,688	-		MMJJ_RS06005	0.70	-1.0
1,117,688	-		MMJJ_RS06005	0.70	-1.2
1,117,688	-		MMJJ_RS06005	0.70	+1.5
1,117,689	+		MMJJ_RS06005	0.70	-0.3
1,117,832	-		MMJJ_RS06005	0.80	-1.3
1,117,853	-		MMJJ_RS06005	0.82	-1.3
1,118,043	+				-3.5
1,118,046	-				+1.1
1,118,047	+				-3.7
1,118,047	+				+0.2
1,118,048	-				-0.2
1,118,049	+				-4.1
1,118,072	-				-3.2
1,118,072	-				+0.1
1,118,072	-				-3.8
1,118,072	-				+0.8
1,118,073	+				+0.5
1,118,073	+				-0.7
1,118,073	+				-0.1
1,118,114	-				-3.5
1,118,115	+				+0.7
1,118,115	+				-0.9
1,118,115	+				-0.8
1,118,117	+				-0.1
1,118,223	+		MMJJ_RS06010	0.28	+0.0
1,118,269	-		MMJJ_RS06010	0.43	+0.8
1,118,272	+		MMJJ_RS06010	0.44	-3.1
1,118,342	+		MMJJ_RS06010	0.67	-2.2
1,118,374	-		MMJJ_RS06010	0.77	-2.6
1,118,374	-		MMJJ_RS06010	0.77	-2.8
1,118,374	-		MMJJ_RS06010	0.77	+1.5
1,118,374	-		MMJJ_RS06010	0.77	+0.2
1,118,374	-		MMJJ_RS06010	0.77	+0.5
1,118,375	+		MMJJ_RS06010	0.77	+1.3
1,118,378	-		MMJJ_RS06010	0.78	+1.3
1,118,379	+		MMJJ_RS06010	0.79	-0.6
1,118,431	+				+0.7
1,118,431	+				+0.9
1,118,431	+				-1.7
1,118,431	+				-0.2
1,118,451	+				-2.2
1,118,529	+				-0.5
1,118,534	+		MMJJ_RS06015	0.10	-0.4
1,118,534	+		MMJJ_RS06015	0.10	+1.0
1,118,551	-		MMJJ_RS06015	0.13	+0.5
1,118,557	+		MMJJ_RS06015	0.14	+0.0
1,118,765	-		MMJJ_RS06015	0.41	+1.8
1,118,803	-		MMJJ_RS06015	0.46	-3.2
1,118,803	-		MMJJ_RS06015	0.46	-2.1
1,118,807	+		MMJJ_RS06015	0.46	+1.0
1,118,810	+		MMJJ_RS06015	0.47	-2.7
1,118,834	+		MMJJ_RS06015	0.50	-0.4
1,118,834	+		MMJJ_RS06015	0.50	-3.5
1,118,849	+		MMJJ_RS06015	0.52	+1.1
1,118,849	+		MMJJ_RS06015	0.52	-1.0
1,118,849	+		MMJJ_RS06015	0.52	-1.0
1,118,849	+		MMJJ_RS06015	0.52	-1.5
1,118,882	+		MMJJ_RS06015	0.56	+2.1
1,118,882	+		MMJJ_RS06015	0.56	+0.5
1,118,896	+		MMJJ_RS06015	0.58	-3.4
1,118,896	+		MMJJ_RS06015	0.58	-1.6
1,118,896	+		MMJJ_RS06015	0.58	+0.6
1,118,897	-		MMJJ_RS06015	0.58	+0.2
1,118,897	-		MMJJ_RS06015	0.58	-0.4
1,118,898	+		MMJJ_RS06015	0.58	+0.6
1,118,937	+		MMJJ_RS06015	0.63	+1.3
1,118,966	+		MMJJ_RS06015	0.67	+0.5
1,118,966	+		MMJJ_RS06015	0.67	-3.3
1,118,966	+		MMJJ_RS06015	0.67	-2.8
1,119,013	-		MMJJ_RS06015	0.73	+2.0
1,119,031	+		MMJJ_RS06015	0.76	+0.3
1,119,111	-		MMJJ_RS06015	0.86	+0.5
1,119,187	-				+0.1
1,119,214	+				-1.9
1,119,223	-				+0.2
1,119,224	+				+1.1
1,119,238	+				-3.5
1,119,294	-		MMJJ_RS06020	0.26	-2.2
1,119,295	+		MMJJ_RS06020	0.26	+0.5
1,119,363	-		MMJJ_RS06020	0.52	-1.3
1,119,364	+		MMJJ_RS06020	0.52	-1.0
1,119,364	+		MMJJ_RS06020	0.52	-3.6
1,119,368	+		MMJJ_RS06020	0.54	+0.6
1,119,368	+		MMJJ_RS06020	0.54	-1.2
1,119,375	+		MMJJ_RS06020	0.57	+1.4
1,119,395	-		MMJJ_RS06020	0.64	-4.5
1,119,396	+		MMJJ_RS06020	0.65	-1.9
1,119,408	-		MMJJ_RS06020	0.69	+0.4
1,119,408	-		MMJJ_RS06020	0.69	-2.7
1,119,423	-		MMJJ_RS06020	0.75	-0.6
1,119,442	+		MMJJ_RS06020	0.82	-1.9
1,119,466	-				-2.5
1,119,467	+				+1.0
1,119,467	+				+1.8
1,119,488	-				+0.8
1,119,489	+				+0.4
1,119,489	+				-3.7
1,119,489	+				-3.1
1,119,494	+				+0.3
1,119,542	-				-0.8
1,119,593	+				-0.6
1,119,626	-				-0.0
1,119,627	+				+0.7
1,119,693	-		MMJJ_RS06025	0.14	+2.2
1,119,755	+		MMJJ_RS06025	0.18	+0.6
1,119,824	-		MMJJ_RS06025	0.23	+0.5
1,119,828	+		MMJJ_RS06025	0.23	-0.3
1,119,840	-		MMJJ_RS06025	0.24	-0.0
1,119,841	+		MMJJ_RS06025	0.24	+0.5
1,119,842	-		MMJJ_RS06025	0.24	-1.6
1,119,855	-		MMJJ_RS06025	0.25	+1.0
1,119,855	-		MMJJ_RS06025	0.25	-4.3
1,119,890	-		MMJJ_RS06025	0.28	-0.4
1,119,898	-		MMJJ_RS06025	0.28	-1.5
1,119,909	-		MMJJ_RS06025	0.29	+0.7
1,119,910	+		MMJJ_RS06025	0.29	-3.5
1,119,910	+		MMJJ_RS06025	0.29	-4.7
1,119,943	+		MMJJ_RS06025	0.31	-0.3
1,119,967	-		MMJJ_RS06025	0.33	+1.4
1,119,977	+		MMJJ_RS06025	0.34	+0.6
1,120,034	+		MMJJ_RS06025	0.38	+1.9
1,120,053	-		MMJJ_RS06025	0.39	+0.2
1,120,053	-		MMJJ_RS06025	0.39	+0.1
1,120,053	-		MMJJ_RS06025	0.39	+1.1
1,120,054	+		MMJJ_RS06025	0.39	+0.2
1,120,054	+		MMJJ_RS06025	0.39	+1.0
1,120,057	-		MMJJ_RS06025	0.39	+0.7
1,120,057	-		MMJJ_RS06025	0.39	+0.9
1,120,057	-		MMJJ_RS06025	0.39	-1.3
1,120,057	-		MMJJ_RS06025	0.39	+2.0
1,120,057	-		MMJJ_RS06025	0.39	-0.1
1,120,058	+		MMJJ_RS06025	0.39	+0.5
1,120,058	+		MMJJ_RS06025	0.39	-0.9
1,120,058	+		MMJJ_RS06025	0.39	+0.7
1,120,058	+		MMJJ_RS06025	0.39	+0.4
1,120,058	+		MMJJ_RS06025	0.39	-0.4
1,120,058	+		MMJJ_RS06025	0.39	-0.7
1,120,058	+		MMJJ_RS06025	0.39	+1.2
1,120,090	-		MMJJ_RS06025	0.42	-4.4
1,120,090	-		MMJJ_RS06025	0.42	+0.2
1,120,112	-		MMJJ_RS06025	0.43	-0.7
1,120,113	+		MMJJ_RS06025	0.43	+1.4
1,120,113	+		MMJJ_RS06025	0.43	-3.2
1,120,116	+		MMJJ_RS06025	0.43	+1.6
1,120,116	+		MMJJ_RS06025	0.43	+2.0
1,120,116	+		MMJJ_RS06025	0.43	+1.0
1,120,122	+		MMJJ_RS06025	0.44	-0.9
1,120,122	+		MMJJ_RS06025	0.44	-0.1
1,120,129	-		MMJJ_RS06025	0.44	-1.5
1,120,129	-		MMJJ_RS06025	0.44	+1.2
1,120,129	-		MMJJ_RS06025	0.44	-0.8
1,120,130	+		MMJJ_RS06025	0.44	-2.5
1,120,130	+		MMJJ_RS06025	0.44	+2.5
1,120,148	+		MMJJ_RS06025	0.46	-1.7
1,120,152	-		MMJJ_RS06025	0.46	+0.0
1,120,177	-		MMJJ_RS06025	0.48	+1.4
1,120,177	-		MMJJ_RS06025	0.48	-0.7
1,120,193	-		MMJJ_RS06025	0.49	+0.4
1,120,194	+		MMJJ_RS06025	0.49	+0.3