Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS05985

Experiment: McCas-formate glass attached

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas-formate glass attached
1,112,111	-		MMJJ_RS05975	0.41	+0.9
1,112,112	+		MMJJ_RS05975	0.41	-1.0
1,112,143	-		MMJJ_RS05975	0.45	-0.0
1,112,143	-		MMJJ_RS05975	0.45	+1.0
1,112,143	-		MMJJ_RS05975	0.45	+0.7
1,112,144	+		MMJJ_RS05975	0.45	+0.0
1,112,144	+		MMJJ_RS05975	0.45	+0.3
1,112,144	+		MMJJ_RS05975	0.45	+0.4
1,112,176	+		MMJJ_RS05975	0.49	-2.8
1,112,189	-		MMJJ_RS05975	0.51	-0.6
1,112,243	+		MMJJ_RS05975	0.57	+1.1
1,112,243	+		MMJJ_RS05975	0.57	-0.8
1,112,243	+		MMJJ_RS05975	0.57	+0.3
1,112,246	-		MMJJ_RS05975	0.58	-3.2
1,112,246	-		MMJJ_RS05975	0.58	+0.8
1,112,246	-		MMJJ_RS05975	0.58	+0.8
1,112,247	+		MMJJ_RS05975	0.58	-0.5
1,112,247	+		MMJJ_RS05975	0.58	+0.5
1,112,247	+		MMJJ_RS05975	0.58	+0.5
1,112,286	-		MMJJ_RS05975	0.62	-0.1
1,112,287	+		MMJJ_RS05975	0.63	-0.3
1,112,340	+		MMJJ_RS05975	0.69	+0.7
1,112,395	-		MMJJ_RS05975	0.76	+0.2
1,112,396	+		MMJJ_RS05975	0.76	-1.2
1,112,468	+		MMJJ_RS05975	0.85	-0.2
1,112,502	+		MMJJ_RS05975	0.89	-1.0
1,112,587	-				-2.0
1,112,589	-				+0.3
1,112,589	-				-3.3
1,112,590	+				+0.3
1,112,593	-				+0.2
1,112,604	-				-0.7
1,112,605	+				-1.3
1,112,618	-				-5.2
1,112,619	+				-0.3
1,112,619	+				+0.4
1,112,628	+				+0.8
1,112,676	-		MMJJ_RS05980	0.22	-0.7
1,112,697	+		MMJJ_RS05980	0.28	-0.3
1,112,709	-		MMJJ_RS05980	0.32	+0.9
1,112,710	+		MMJJ_RS05980	0.32	-1.2
1,112,711	-		MMJJ_RS05980	0.32	+1.0
1,112,717	-		MMJJ_RS05980	0.34	+0.2
1,112,718	+		MMJJ_RS05980	0.34	+0.2
1,112,730	-		MMJJ_RS05980	0.38	+0.1
1,112,730	-		MMJJ_RS05980	0.38	+1.3
1,112,730	-		MMJJ_RS05980	0.38	-1.9
1,112,754	+		MMJJ_RS05980	0.45	+0.8
1,112,754	+		MMJJ_RS05980	0.45	+0.5
1,112,764	+		MMJJ_RS05980	0.48	+0.5
1,112,769	+		MMJJ_RS05980	0.50	+0.7
1,112,776	-		MMJJ_RS05980	0.52	-0.7
1,112,777	+		MMJJ_RS05980	0.52	-0.2
1,112,833	+		MMJJ_RS05980	0.69	-0.4
1,112,838	-		MMJJ_RS05980	0.71	+0.0
1,112,860	+		MMJJ_RS05980	0.77	-2.7
1,112,867	-		MMJJ_RS05980	0.79	-2.5
1,112,868	+		MMJJ_RS05980	0.80	-0.9
1,112,868	+		MMJJ_RS05980	0.80	+0.5
1,112,869	-		MMJJ_RS05980	0.80	-0.2
1,112,870	+		MMJJ_RS05980	0.80	-0.4
1,112,870	+		MMJJ_RS05980	0.80	+0.6
1,112,888	-		MMJJ_RS05980	0.86	-1.1
1,112,889	+		MMJJ_RS05980	0.86	-1.2
1,112,907	+				+1.9
1,112,907	+				+0.6
1,112,907	+				+0.5
1,112,924	-				-0.1
1,112,924	-				-1.7
1,112,925	+				+1.8
1,112,925	+				+1.1
1,112,925	+				-0.0
1,112,925	+				-0.1
1,112,932	-				-0.4
1,112,932	-				+0.3
1,112,932	-				+1.3
1,112,932	-				+0.4
1,112,932	-				-3.5
1,112,933	+				+0.8
1,112,933	+				-0.7
1,112,942	-				-2.8
1,112,943	+				-0.7
1,112,943	+				+0.3
1,112,950	+				-0.7
1,112,957	+				+0.2
1,112,961	-				+0.6
1,112,961	-				+0.3
1,112,977	+				+0.2
1,113,049	+				-0.1
1,113,092	-				-0.4
1,113,120	+				+0.4
1,113,128	-		MMJJ_RS05985	0.11	+0.2
1,113,148	-		MMJJ_RS05985	0.13	+0.2
1,113,180	-		MMJJ_RS05985	0.18	+0.5
1,113,201	+		MMJJ_RS05985	0.21	+0.3
1,113,259	-		MMJJ_RS05985	0.29	-0.5
1,113,259	-		MMJJ_RS05985	0.29	+0.7
1,113,260	+		MMJJ_RS05985	0.29	+0.1
1,113,260	+		MMJJ_RS05985	0.29	-3.1
1,113,262	+		MMJJ_RS05985	0.29	-0.4
1,113,262	+		MMJJ_RS05985	0.29	+0.4
1,113,281	+		MMJJ_RS05985	0.32	+0.3
1,113,326	-		MMJJ_RS05985	0.38	+1.7
1,113,327	+		MMJJ_RS05985	0.38	-2.9
1,113,327	+		MMJJ_RS05985	0.38	-0.2
1,113,327	+		MMJJ_RS05985	0.38	-1.0
1,113,351	-		MMJJ_RS05985	0.41	-3.8
1,113,352	+		MMJJ_RS05985	0.42	-0.1
1,113,404	-		MMJJ_RS05985	0.49	+1.2
1,113,404	-		MMJJ_RS05985	0.49	-1.0
1,113,405	+		MMJJ_RS05985	0.49	+0.6
1,113,405	+		MMJJ_RS05985	0.49	+0.3
1,113,405	+		MMJJ_RS05985	0.49	-1.4
1,113,405	+		MMJJ_RS05985	0.49	+0.7
1,113,408	-		MMJJ_RS05985	0.49	+1.3
1,113,408	-		MMJJ_RS05985	0.49	+0.3
1,113,420	-		MMJJ_RS05985	0.51	+0.5
1,113,420	-		MMJJ_RS05985	0.51	-1.7
1,113,436	-		MMJJ_RS05985	0.53	+1.0
1,113,437	+		MMJJ_RS05985	0.53	+0.8
1,113,556	-		MMJJ_RS05985	0.70	+0.0
1,113,656	+		MMJJ_RS05985	0.84	+0.9
1,113,695	-		MMJJ_RS05985	0.89	+0.5
1,113,696	+		MMJJ_RS05985	0.89	+0.7
1,113,696	+		MMJJ_RS05985	0.89	+0.1
1,113,704	-				+1.1
1,113,704	-				-0.7
1,113,705	+				+1.3
1,113,719	-				-0.6
1,113,720	+				+0.4
1,113,720	+				+0.2
1,113,720	+				-4.2
1,113,738	-				+0.3
1,113,756	-				+1.3
1,113,823	-				+0.8
1,113,824	+				-0.2
1,113,825	-				-2.7
1,113,825	-				+0.7
1,113,825	-				-0.0
1,113,825	-				-0.1
1,113,825	-				-3.2
1,113,825	-				-2.9
1,113,825	-				+0.5
1,113,826	+				-4.3
1,113,826	+				+0.2
1,113,826	+				-0.8
1,113,826	+				+0.5
1,113,826	+				-0.2
1,113,826	+				-1.2
1,113,826	+				-0.6
1,113,826	+				-0.7
1,113,826	+				-0.3
1,113,826	+				-0.4
1,113,836	-				-0.4
1,113,836	-				+0.3
1,113,837	+				+0.3
1,113,843	-				-1.3
1,113,844	+				+0.3
1,113,844	+				+0.3
1,113,857	-				-0.2
1,113,868	-				+0.3
1,113,869	+				-0.1
1,113,870	-				+0.5
1,113,870	-				+0.9
1,113,887	-				-0.8
1,113,887	-				-1.1
1,113,888	+				+0.4
1,113,888	+				+0.4
1,113,892	+				-0.8
1,113,933	-				+0.3
1,113,940	+				+0.2
1,113,998	+		MMJJ_RS05990	0.11	-3.3
1,113,998	+		MMJJ_RS05990	0.11	+0.7
1,114,044	-		MMJJ_RS05990	0.20	-0.7
1,114,045	+		MMJJ_RS05990	0.20	-1.4
1,114,045	+		MMJJ_RS05990	0.20	-1.9
1,114,045	+		MMJJ_RS05990	0.20	-0.8
1,114,046	-		MMJJ_RS05990	0.20	-0.3
1,114,046	-		MMJJ_RS05990	0.20	+0.5
1,114,046	-		MMJJ_RS05990	0.20	+0.2
1,114,046	-		MMJJ_RS05990	0.20	-0.6
1,114,046	-		MMJJ_RS05990	0.20	-0.2
1,114,046	-		MMJJ_RS05990	0.20	-0.2
1,114,046	-		MMJJ_RS05990	0.20	+1.5
1,114,046	-		MMJJ_RS05990	0.20	+0.0
1,114,047	+		MMJJ_RS05990	0.20	+0.4
1,114,113	-		MMJJ_RS05990	0.32	+1.2
1,114,132	+		MMJJ_RS05990	0.36	-0.8
1,114,140	-		MMJJ_RS05990	0.37	-0.2
1,114,140	-		MMJJ_RS05990	0.37	+0.5
1,114,140	-		MMJJ_RS05990	0.37	-0.5
1,114,141	+		MMJJ_RS05990	0.38	+1.2
1,114,141	+		MMJJ_RS05990	0.38	-2.0
1,114,141	+		MMJJ_RS05990	0.38	-0.0
1,114,143	-		MMJJ_RS05990	0.38	+0.6
1,114,152	-		MMJJ_RS05990	0.40	-4.0
1,114,164	-		MMJJ_RS05990	0.42	-0.2
1,114,216	-		MMJJ_RS05990	0.51	-0.6
1,114,350	-		MMJJ_RS05990	0.76	-0.5
1,114,434	-				+0.9
1,114,435	+				+1.1
1,114,435	+				+0.5
1,114,438	+				+0.3
1,114,447	-				+0.7
1,114,456	-				+0.2
1,114,477	-				-0.6
1,114,482	+				-1.6
1,114,482	+				+0.2
1,114,482	+				+0.3
1,114,498	+				-0.2
1,114,580	+				-0.7