Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS05195

Experiment: McCas-formate glass attached

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS05180 and MMJJ_RS05185 are separated by 37 nucleotidesMMJJ_RS05185 and MMJJ_RS05190 are separated by 48 nucleotidesMMJJ_RS05190 and MMJJ_RS05195 are separated by 38 nucleotidesMMJJ_RS05195 and MMJJ_RS05200 are separated by 57 nucleotides MMJJ_RS05180: MMJJ_RS05180 - phosphoribosyl-ATP diphosphatase, at 958,545 to 958,835 _RS05180 MMJJ_RS05185: MMJJ_RS05185 - 6,7-dimethyl-8-ribityllumazine synthase, at 958,873 to 959,286 _RS05185 MMJJ_RS05190: MMJJ_RS05190 - gamma carbonic anhydrase family protein, at 959,335 to 959,790 _RS05190 MMJJ_RS05195: MMJJ_RS05195 - hypothetical protein, at 959,829 to 960,101 _RS05195 MMJJ_RS05200: MMJJ_RS05200 - TIGR04013 family B12-binding domain/radical SAM domain-containing protein, at 960,159 to 961,268 _RS05200 Position (kb) 959 960 961Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 959.311 kb on + strandat 959.314 kb on + strandat 959.351 kb on + strandat 959.360 kb on - strandat 959.389 kb on - strand, within MMJJ_RS05190at 959.413 kb on - strand, within MMJJ_RS05190at 959.445 kb on - strand, within MMJJ_RS05190at 959.524 kb on - strand, within MMJJ_RS05190at 959.525 kb on + strand, within MMJJ_RS05190at 959.551 kb on - strand, within MMJJ_RS05190at 959.551 kb on - strand, within MMJJ_RS05190at 959.680 kb on - strand, within MMJJ_RS05190at 959.691 kb on - strand, within MMJJ_RS05190at 959.692 kb on + strand, within MMJJ_RS05190at 959.698 kb on + strand, within MMJJ_RS05190at 959.711 kb on + strand, within MMJJ_RS05190at 959.727 kb on - strand, within MMJJ_RS05190at 959.728 kb on + strand, within MMJJ_RS05190at 959.791 kb on - strandat 959.792 kb on + strandat 959.793 kb on - strandat 959.802 kb on - strandat 959.802 kb on - strandat 959.815 kb on - strandat 959.901 kb on - strand, within MMJJ_RS05195at 959.901 kb on - strand, within MMJJ_RS05195at 959.902 kb on + strand, within MMJJ_RS05195at 959.993 kb on + strand, within MMJJ_RS05195at 960.001 kb on - strand, within MMJJ_RS05195at 960.001 kb on - strand, within MMJJ_RS05195at 960.006 kb on + strand, within MMJJ_RS05195at 960.053 kb on - strand, within MMJJ_RS05195at 960.064 kb on - strand, within MMJJ_RS05195at 960.077 kb on - strandat 960.077 kb on - strandat 960.079 kb on - strandat 960.079 kb on - strandat 960.080 kb on + strandat 960.081 kb on - strandat 960.081 kb on - strandat 960.081 kb on - strandat 960.081 kb on - strandat 960.081 kb on - strandat 960.081 kb on - strandat 960.081 kb on - strandat 960.082 kb on + strandat 960.082 kb on + strandat 960.082 kb on + strandat 960.082 kb on + strandat 960.082 kb on + strandat 960.082 kb on + strandat 960.082 kb on + strandat 960.131 kb on - strandat 960.131 kb on - strandat 960.132 kb on + strandat 960.133 kb on - strandat 960.134 kb on + strandat 960.135 kb on - strandat 960.135 kb on - strandat 960.136 kb on + strandat 960.136 kb on + strandat 960.136 kb on + strandat 960.148 kb on - strandat 960.148 kb on - strandat 960.148 kb on - strandat 960.148 kb on - strandat 960.148 kb on - strandat 960.148 kb on - strandat 960.149 kb on + strandat 960.149 kb on + strandat 960.152 kb on - strandat 960.152 kb on - strandat 960.158 kb on - strandat 960.170 kb on - strandat 960.192 kb on - strandat 960.192 kb on - strandat 960.192 kb on - strandat 960.193 kb on + strandat 960.193 kb on + strandat 960.193 kb on + strandat 960.198 kb on + strandat 960.198 kb on + strandat 960.198 kb on + strandat 960.208 kb on - strandat 960.209 kb on + strandat 960.209 kb on + strandat 960.209 kb on + strandat 960.210 kb on - strandat 960.217 kb on - strandat 960.221 kb on + strandat 960.221 kb on + strandat 960.232 kb on - strandat 960.232 kb on - strandat 960.283 kb on - strand, within MMJJ_RS05200at 960.289 kb on + strand, within MMJJ_RS05200at 960.302 kb on - strand, within MMJJ_RS05200at 960.302 kb on - strand, within MMJJ_RS05200at 960.331 kb on - strand, within MMJJ_RS05200at 960.332 kb on + strand, within MMJJ_RS05200at 960.362 kb on - strand, within MMJJ_RS05200at 960.362 kb on - strand, within MMJJ_RS05200at 960.364 kb on - strand, within MMJJ_RS05200at 960.364 kb on - strand, within MMJJ_RS05200at 960.408 kb on + strand, within MMJJ_RS05200at 960.433 kb on - strand, within MMJJ_RS05200at 960.436 kb on - strand, within MMJJ_RS05200at 960.473 kb on + strand, within MMJJ_RS05200at 960.512 kb on - strand, within MMJJ_RS05200at 960.579 kb on + strand, within MMJJ_RS05200at 960.594 kb on - strand, within MMJJ_RS05200at 960.594 kb on - strand, within MMJJ_RS05200at 960.594 kb on - strand, within MMJJ_RS05200at 960.594 kb on - strand, within MMJJ_RS05200at 960.602 kb on - strandat 960.603 kb on + strand, within MMJJ_RS05200at 960.626 kb on + strand, within MMJJ_RS05200at 960.626 kb on + strand, within MMJJ_RS05200at 960.626 kb on + strand, within MMJJ_RS05200at 960.638 kb on - strand, within MMJJ_RS05200at 960.641 kb on + strand, within MMJJ_RS05200at 960.647 kb on - strand, within MMJJ_RS05200at 960.647 kb on - strand, within MMJJ_RS05200at 960.647 kb on - strand, within MMJJ_RS05200at 960.648 kb on + strand, within MMJJ_RS05200at 960.648 kb on + strand, within MMJJ_RS05200at 960.654 kb on + strand, within MMJJ_RS05200at 960.654 kb on + strand, within MMJJ_RS05200at 960.663 kb on + strand, within MMJJ_RS05200at 960.703 kb on - strand, within MMJJ_RS05200at 960.723 kb on - strand, within MMJJ_RS05200at 960.724 kb on + strand, within MMJJ_RS05200at 960.753 kb on + strand, within MMJJ_RS05200at 960.832 kb on - strand, within MMJJ_RS05200at 960.833 kb on + strand, within MMJJ_RS05200at 960.869 kb on + strand, within MMJJ_RS05200at 960.869 kb on + strand, within MMJJ_RS05200at 960.875 kb on - strand, within MMJJ_RS05200at 960.875 kb on - strand, within MMJJ_RS05200at 960.894 kb on - strand, within MMJJ_RS05200at 960.941 kb on - strand, within MMJJ_RS05200at 960.941 kb on - strand, within MMJJ_RS05200at 960.942 kb on + strand, within MMJJ_RS05200at 960.942 kb on + strand, within MMJJ_RS05200at 960.942 kb on + strand, within MMJJ_RS05200at 960.943 kb on - strand, within MMJJ_RS05200at 960.943 kb on - strand, within MMJJ_RS05200at 960.944 kb on + strand, within MMJJ_RS05200at 961.007 kb on + strand, within MMJJ_RS05200at 961.026 kb on + strand, within MMJJ_RS05200at 961.086 kb on - strand, within MMJJ_RS05200at 961.086 kb on - strand, within MMJJ_RS05200at 961.087 kb on + strand, within MMJJ_RS05200at 961.091 kb on - strand, within MMJJ_RS05200at 961.091 kb on - strand, within MMJJ_RS05200at 961.093 kb on - strand, within MMJJ_RS05200

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas-formate glass attached
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959,311 + -2.9
959,314 + -2.1
959,351 + -0.4
959,360 - -2.3
959,389 - MMJJ_RS05190 0.12 -1.0
959,413 - MMJJ_RS05190 0.17 -0.2
959,445 - MMJJ_RS05190 0.24 -1.9
959,524 - MMJJ_RS05190 0.41 -1.7
959,525 + MMJJ_RS05190 0.42 -5.3
959,551 - MMJJ_RS05190 0.47 -5.0
959,551 - MMJJ_RS05190 0.47 +0.5
959,680 - MMJJ_RS05190 0.76 +0.3
959,691 - MMJJ_RS05190 0.78 +1.5
959,692 + MMJJ_RS05190 0.78 -0.5
959,698 + MMJJ_RS05190 0.80 -0.1
959,711 + MMJJ_RS05190 0.82 -1.3
959,727 - MMJJ_RS05190 0.86 +0.1
959,728 + MMJJ_RS05190 0.86 +1.1
959,791 - +1.0
959,792 + -1.8
959,793 - -0.0
959,802 - +0.6
959,802 - +0.6
959,815 - +0.4
959,901 - MMJJ_RS05195 0.26 +0.1
959,901 - MMJJ_RS05195 0.26 +1.1
959,902 + MMJJ_RS05195 0.27 -1.4
959,993 + MMJJ_RS05195 0.60 +0.8
960,001 - MMJJ_RS05195 0.63 +0.2
960,001 - MMJJ_RS05195 0.63 +0.2
960,006 + MMJJ_RS05195 0.65 +0.6
960,053 - MMJJ_RS05195 0.82 -0.2
960,064 - MMJJ_RS05195 0.86 +0.7
960,077 - +0.0
960,077 - +0.5
960,079 - -0.2
960,079 - +0.3
960,080 + +0.5
960,081 - -1.7
960,081 - -0.1
960,081 - -1.2
960,081 - +0.3
960,081 - -3.7
960,081 - +0.5
960,081 - +0.4
960,082 + -0.1
960,082 + -0.0
960,082 + +0.4
960,082 + -1.2
960,082 + +0.2
960,082 + -0.1
960,082 + +0.5
960,131 - +0.6
960,131 - +0.1
960,132 + +0.3
960,133 - -1.0
960,134 + -0.4
960,135 - -2.0
960,135 - -1.9
960,136 + -0.1
960,136 + +1.5
960,136 + +0.2
960,148 - +0.3
960,148 - +1.0
960,148 - +0.7
960,148 - +0.2
960,148 - +0.0
960,148 - +1.9
960,149 + -0.6
960,149 + -1.2
960,152 - -0.7
960,152 - -0.8
960,158 - +1.0
960,170 - +0.6
960,192 - -2.6
960,192 - -0.5
960,192 - -1.1
960,193 + -4.0
960,193 + -1.9
960,193 + -3.0
960,198 + +0.3
960,198 + +1.0
960,198 + +0.6
960,208 - +0.3
960,209 + +0.9
960,209 + -0.5
960,209 + +0.6
960,210 - +1.8
960,217 - -0.1
960,221 + +0.8
960,221 + -0.3
960,232 - -0.2
960,232 - -0.0
960,283 - MMJJ_RS05200 0.11 +0.4
960,289 + MMJJ_RS05200 0.12 +0.9
960,302 - MMJJ_RS05200 0.13 -1.2
960,302 - MMJJ_RS05200 0.13 -0.5
960,331 - MMJJ_RS05200 0.15 +0.8
960,332 + MMJJ_RS05200 0.16 -0.8
960,362 - MMJJ_RS05200 0.18 -1.2
960,362 - MMJJ_RS05200 0.18 -0.5
960,364 - MMJJ_RS05200 0.18 +1.2
960,364 - MMJJ_RS05200 0.18 -0.5
960,408 + MMJJ_RS05200 0.22 -1.0
960,433 - MMJJ_RS05200 0.25 +1.0
960,436 - MMJJ_RS05200 0.25 +0.8
960,473 + MMJJ_RS05200 0.28 +0.6
960,512 - MMJJ_RS05200 0.32 -1.7
960,579 + MMJJ_RS05200 0.38 +0.6
960,594 - MMJJ_RS05200 0.39 +1.2
960,594 - MMJJ_RS05200 0.39 +1.1
960,594 - MMJJ_RS05200 0.39 +0.9
960,594 - MMJJ_RS05200 0.39 +2.0
960,602 - -0.9
960,603 + MMJJ_RS05200 0.40 +0.7
960,626 + MMJJ_RS05200 0.42 +1.0
960,626 + MMJJ_RS05200 0.42 -0.2
960,626 + MMJJ_RS05200 0.42 +0.2
960,638 - MMJJ_RS05200 0.43 -0.6
960,641 + MMJJ_RS05200 0.43 +0.5
960,647 - MMJJ_RS05200 0.44 +0.8
960,647 - MMJJ_RS05200 0.44 -0.9
960,647 - MMJJ_RS05200 0.44 -0.6
960,648 + MMJJ_RS05200 0.44 +1.0
960,648 + MMJJ_RS05200 0.44 +0.2
960,654 + MMJJ_RS05200 0.45 -0.0
960,654 + MMJJ_RS05200 0.45 +0.8
960,663 + MMJJ_RS05200 0.45 -0.5
960,703 - MMJJ_RS05200 0.49 -2.5
960,723 - MMJJ_RS05200 0.51 +0.2
960,724 + MMJJ_RS05200 0.51 +0.5
960,753 + MMJJ_RS05200 0.54 -0.2
960,832 - MMJJ_RS05200 0.61 -0.1
960,833 + MMJJ_RS05200 0.61 -2.6
960,869 + MMJJ_RS05200 0.64 -0.4
960,869 + MMJJ_RS05200 0.64 +0.8
960,875 - MMJJ_RS05200 0.65 +0.4
960,875 - MMJJ_RS05200 0.65 -0.3
960,894 - MMJJ_RS05200 0.66 -1.6
960,941 - MMJJ_RS05200 0.70 +0.1
960,941 - MMJJ_RS05200 0.70 +0.7
960,942 + MMJJ_RS05200 0.71 -1.8
960,942 + MMJJ_RS05200 0.71 +0.9
960,942 + MMJJ_RS05200 0.71 +0.2
960,943 - MMJJ_RS05200 0.71 -2.3
960,943 - MMJJ_RS05200 0.71 -0.2
960,944 + MMJJ_RS05200 0.71 -1.2
961,007 + MMJJ_RS05200 0.76 +0.4
961,026 + MMJJ_RS05200 0.78 +0.5
961,086 - MMJJ_RS05200 0.84 -1.2
961,086 - MMJJ_RS05200 0.84 +0.0
961,087 + MMJJ_RS05200 0.84 +0.2
961,091 - MMJJ_RS05200 0.84 +0.2
961,091 - MMJJ_RS05200 0.84 -1.1
961,093 - MMJJ_RS05200 0.84 -0.1

Or see this region's nucleotide sequence