Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS04870

Experiment: McCas-formate glass attached

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS04860 and MMJJ_RS04865 are separated by 89 nucleotidesMMJJ_RS04865 and MMJJ_RS04870 are separated by 52 nucleotidesMMJJ_RS04870 and MMJJ_RS04875 are separated by 20 nucleotidesMMJJ_RS04875 and MMJJ_RS04880 are separated by 33 nucleotidesMMJJ_RS04880 and MMJJ_RS04885 are separated by 16 nucleotidesMMJJ_RS04885 and MMJJ_RS04890 are separated by 40 nucleotidesMMJJ_RS04890 and MMJJ_RS04895 are separated by 16 nucleotidesMMJJ_RS04895 and MMJJ_RS04900 are separated by 8 nucleotidesMMJJ_RS04900 and MMJJ_RS04905 are separated by 46 nucleotidesMMJJ_RS04905 and MMJJ_RS04910 are separated by 157 nucleotides MMJJ_RS04860: MMJJ_RS04860 - hypothetical protein, at 910,619 to 911,179 _RS04860 MMJJ_RS04865: MMJJ_RS04865 - 4Fe-4S binding protein, at 911,269 to 911,886 _RS04865 MMJJ_RS04870: MMJJ_RS04870 - tRNA-Asp, at 911,939 to 912,013 _RS04870 MMJJ_RS04875: MMJJ_RS04875 - tRNA-Lys, at 912,034 to 912,107 _RS04875 MMJJ_RS04880: MMJJ_RS04880 - tRNA-Asp, at 912,141 to 912,215 _RS04880 MMJJ_RS04885: MMJJ_RS04885 - 5S ribosomal RNA, at 912,232 to 912,346 _RS04885 MMJJ_RS04890: MMJJ_RS04890 - tRNA-Lys, at 912,387 to 912,460 _RS04890 MMJJ_RS04895: MMJJ_RS04895 - tRNA-Tyr, at 912,477 to 912,550 _RS04895 MMJJ_RS04900: MMJJ_RS04900 - tRNA-Pro, at 912,559 to 912,635 _RS04900 MMJJ_RS04905: MMJJ_RS04905 - tRNA-Thr, at 912,682 to 912,755 _RS04905 MMJJ_RS04910: MMJJ_RS04910 - pyridoxal 5'-phosphate synthase lyase subunit PdxS, at 912,913 to 913,812 _RS04910 Position (kb) 911 912 913Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 910.952 kb on - strand, within MMJJ_RS04860at 910.952 kb on - strand, within MMJJ_RS04860at 910.953 kb on + strand, within MMJJ_RS04860at 910.953 kb on + strand, within MMJJ_RS04860at 910.983 kb on + strand, within MMJJ_RS04860at 910.983 kb on + strand, within MMJJ_RS04860at 910.983 kb on + strand, within MMJJ_RS04860at 911.011 kb on - strand, within MMJJ_RS04860at 911.012 kb on + strand, within MMJJ_RS04860at 911.012 kb on + strand, within MMJJ_RS04860at 911.012 kb on + strand, within MMJJ_RS04860at 911.012 kb on + strand, within MMJJ_RS04860at 911.018 kb on - strand, within MMJJ_RS04860at 911.019 kb on + strand, within MMJJ_RS04860at 911.056 kb on - strand, within MMJJ_RS04860at 911.057 kb on + strand, within MMJJ_RS04860at 911.057 kb on + strand, within MMJJ_RS04860at 911.060 kb on - strand, within MMJJ_RS04860at 911.071 kb on - strand, within MMJJ_RS04860at 911.071 kb on - strand, within MMJJ_RS04860at 911.075 kb on + strand, within MMJJ_RS04860at 911.082 kb on - strand, within MMJJ_RS04860at 911.093 kb on - strand, within MMJJ_RS04860at 911.097 kb on - strand, within MMJJ_RS04860at 911.097 kb on - strand, within MMJJ_RS04860at 911.097 kb on - strand, within MMJJ_RS04860at 911.097 kb on - strand, within MMJJ_RS04860at 911.097 kb on - strand, within MMJJ_RS04860at 911.097 kb on - strand, within MMJJ_RS04860at 911.097 kb on - strand, within MMJJ_RS04860at 911.098 kb on + strand, within MMJJ_RS04860at 911.098 kb on + strand, within MMJJ_RS04860at 911.098 kb on + strand, within MMJJ_RS04860at 911.098 kb on + strand, within MMJJ_RS04860at 911.099 kb on - strand, within MMJJ_RS04860at 911.099 kb on - strand, within MMJJ_RS04860at 911.099 kb on - strand, within MMJJ_RS04860at 911.100 kb on + strand, within MMJJ_RS04860at 911.100 kb on + strand, within MMJJ_RS04860at 911.109 kb on + strand, within MMJJ_RS04860at 911.109 kb on + strand, within MMJJ_RS04860at 911.112 kb on - strand, within MMJJ_RS04860at 911.112 kb on - strand, within MMJJ_RS04860at 911.112 kb on - strand, within MMJJ_RS04860at 911.113 kb on + strand, within MMJJ_RS04860at 911.117 kb on + strand, within MMJJ_RS04860at 911.117 kb on + strand, within MMJJ_RS04860at 911.117 kb on + strand, within MMJJ_RS04860at 911.130 kb on + strandat 911.147 kb on - strandat 911.150 kb on - strandat 911.172 kb on - strandat 911.223 kb on - strandat 911.224 kb on + strandat 911.224 kb on + strandat 911.226 kb on - strandat 911.226 kb on - strandat 911.227 kb on + strandat 911.228 kb on - strandat 911.228 kb on - strandat 911.229 kb on + strandat 911.230 kb on - strandat 911.230 kb on - strandat 911.230 kb on - strandat 911.231 kb on + strandat 911.231 kb on + strandat 911.231 kb on + strandat 911.231 kb on + strandat 911.267 kb on + strandat 911.288 kb on + strandat 911.288 kb on + strandat 911.288 kb on + strandat 911.313 kb on - strandat 911.329 kb on - strandat 911.330 kb on + strandat 911.330 kb on + strandat 911.371 kb on - strand, within MMJJ_RS04865at 911.404 kb on + strand, within MMJJ_RS04865at 911.404 kb on + strand, within MMJJ_RS04865at 911.404 kb on + strand, within MMJJ_RS04865at 911.404 kb on + strand, within MMJJ_RS04865at 911.410 kb on - strand, within MMJJ_RS04865at 911.410 kb on - strand, within MMJJ_RS04865at 911.410 kb on - strand, within MMJJ_RS04865at 911.415 kb on - strand, within MMJJ_RS04865at 911.490 kb on - strand, within MMJJ_RS04865at 911.496 kb on - strand, within MMJJ_RS04865at 911.527 kb on - strand, within MMJJ_RS04865at 911.528 kb on + strand, within MMJJ_RS04865at 911.569 kb on - strand, within MMJJ_RS04865at 911.578 kb on - strand, within MMJJ_RS04865at 911.578 kb on - strand, within MMJJ_RS04865at 911.579 kb on + strand, within MMJJ_RS04865at 911.579 kb on + strand, within MMJJ_RS04865at 911.579 kb on + strand, within MMJJ_RS04865at 911.647 kb on - strand, within MMJJ_RS04865at 911.647 kb on - strand, within MMJJ_RS04865at 911.648 kb on + strand, within MMJJ_RS04865at 911.648 kb on + strand, within MMJJ_RS04865at 911.648 kb on + strand, within MMJJ_RS04865at 911.680 kb on - strand, within MMJJ_RS04865at 911.680 kb on - strand, within MMJJ_RS04865at 911.681 kb on + strand, within MMJJ_RS04865at 911.681 kb on + strand, within MMJJ_RS04865at 911.682 kb on - strand, within MMJJ_RS04865at 911.683 kb on + strand, within MMJJ_RS04865at 911.722 kb on - strand, within MMJJ_RS04865at 911.722 kb on - strand, within MMJJ_RS04865at 911.722 kb on - strand, within MMJJ_RS04865at 911.722 kb on - strand, within MMJJ_RS04865at 911.722 kb on - strand, within MMJJ_RS04865at 911.722 kb on - strand, within MMJJ_RS04865at 911.722 kb on - strand, within MMJJ_RS04865at 911.723 kb on + strand, within MMJJ_RS04865at 911.723 kb on + strand, within MMJJ_RS04865at 911.723 kb on + strand, within MMJJ_RS04865at 911.746 kb on - strand, within MMJJ_RS04865at 911.747 kb on + strand, within MMJJ_RS04865at 911.747 kb on + strand, within MMJJ_RS04865at 911.747 kb on + strand, within MMJJ_RS04865at 911.801 kb on - strand, within MMJJ_RS04865at 911.802 kb on + strand, within MMJJ_RS04865at 911.826 kb on - strandat 911.925 kb on - strandat 911.925 kb on - strandat 911.926 kb on + strandat 911.986 kb on + strandat 912.001 kb on + strand, within MMJJ_RS04870at 912.001 kb on + strand, within MMJJ_RS04870at 912.095 kb on + strand, within MMJJ_RS04875at 912.100 kb on + strandat 912.100 kb on + strandat 912.121 kb on - strandat 912.136 kb on - strandat 912.834 kb on - strandat 912.848 kb on - strandat 912.849 kb on + strandat 912.849 kb on + strandat 912.855 kb on - strandat 912.856 kb on + strandat 912.863 kb on - strandat 912.864 kb on + strandat 912.864 kb on + strandat 912.864 kb on + strandat 912.866 kb on - strandat 912.868 kb on - strandat 912.868 kb on - strandat 912.869 kb on + strandat 912.886 kb on - strandat 912.899 kb on + strandat 912.899 kb on + strandat 912.915 kb on + strandat 912.960 kb on - strandat 912.963 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas-formate glass attached
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910,952 - MMJJ_RS04860 0.59 -0.1
910,952 - MMJJ_RS04860 0.59 +0.4
910,953 + MMJJ_RS04860 0.60 +1.4
910,953 + MMJJ_RS04860 0.60 +0.3
910,983 + MMJJ_RS04860 0.65 +0.4
910,983 + MMJJ_RS04860 0.65 -3.2
910,983 + MMJJ_RS04860 0.65 +0.3
911,011 - MMJJ_RS04860 0.70 +0.6
911,012 + MMJJ_RS04860 0.70 -0.1
911,012 + MMJJ_RS04860 0.70 +0.1
911,012 + MMJJ_RS04860 0.70 -0.4
911,012 + MMJJ_RS04860 0.70 +0.6
911,018 - MMJJ_RS04860 0.71 +1.0
911,019 + MMJJ_RS04860 0.71 -0.6
911,056 - MMJJ_RS04860 0.78 -0.5
911,057 + MMJJ_RS04860 0.78 -1.0
911,057 + MMJJ_RS04860 0.78 +0.2
911,060 - MMJJ_RS04860 0.79 +0.5
911,071 - MMJJ_RS04860 0.81 +0.7
911,071 - MMJJ_RS04860 0.81 -3.3
911,075 + MMJJ_RS04860 0.81 -0.1
911,082 - MMJJ_RS04860 0.83 +0.1
911,093 - MMJJ_RS04860 0.84 -0.7
911,097 - MMJJ_RS04860 0.85 +0.3
911,097 - MMJJ_RS04860 0.85 +0.7
911,097 - MMJJ_RS04860 0.85 +0.3
911,097 - MMJJ_RS04860 0.85 -0.6
911,097 - MMJJ_RS04860 0.85 +0.6
911,097 - MMJJ_RS04860 0.85 +0.9
911,097 - MMJJ_RS04860 0.85 +0.3
911,098 + MMJJ_RS04860 0.85 -0.1
911,098 + MMJJ_RS04860 0.85 -1.5
911,098 + MMJJ_RS04860 0.85 -0.3
911,098 + MMJJ_RS04860 0.85 -1.0
911,099 - MMJJ_RS04860 0.86 -0.3
911,099 - MMJJ_RS04860 0.86 -0.1
911,099 - MMJJ_RS04860 0.86 +0.3
911,100 + MMJJ_RS04860 0.86 -5.4
911,100 + MMJJ_RS04860 0.86 -0.5
911,109 + MMJJ_RS04860 0.87 -2.9
911,109 + MMJJ_RS04860 0.87 +0.4
911,112 - MMJJ_RS04860 0.88 -0.7
911,112 - MMJJ_RS04860 0.88 +0.1
911,112 - MMJJ_RS04860 0.88 +0.1
911,113 + MMJJ_RS04860 0.88 +0.8
911,117 + MMJJ_RS04860 0.89 -0.7
911,117 + MMJJ_RS04860 0.89 +0.6
911,117 + MMJJ_RS04860 0.89 +0.1
911,130 + -0.4
911,147 - +0.6
911,150 - +0.7
911,172 - +0.2
911,223 - -1.2
911,224 + +0.4
911,224 + -0.8
911,226 - +0.6
911,226 - +0.4
911,227 + -0.5
911,228 - +0.4
911,228 - -1.4
911,229 + -0.6
911,230 - +0.2
911,230 - +0.0
911,230 - +0.4
911,231 + -0.4
911,231 + +0.3
911,231 + +0.2
911,231 + -1.5
911,267 + +0.6
911,288 + -1.2
911,288 + -1.7
911,288 + +1.4
911,313 - -1.1
911,329 - +0.1
911,330 + +0.6
911,330 + +1.0
911,371 - MMJJ_RS04865 0.17 +1.0
911,404 + MMJJ_RS04865 0.22 +0.9
911,404 + MMJJ_RS04865 0.22 +0.1
911,404 + MMJJ_RS04865 0.22 -0.5
911,404 + MMJJ_RS04865 0.22 -5.3
911,410 - MMJJ_RS04865 0.23 -2.0
911,410 - MMJJ_RS04865 0.23 +1.0
911,410 - MMJJ_RS04865 0.23 +0.1
911,415 - MMJJ_RS04865 0.24 -0.2
911,490 - MMJJ_RS04865 0.36 +0.4
911,496 - MMJJ_RS04865 0.37 -2.7
911,527 - MMJJ_RS04865 0.42 +1.7
911,528 + MMJJ_RS04865 0.42 -0.2
911,569 - MMJJ_RS04865 0.49 +0.4
911,578 - MMJJ_RS04865 0.50 +0.1
911,578 - MMJJ_RS04865 0.50 +0.7
911,579 + MMJJ_RS04865 0.50 -1.6
911,579 + MMJJ_RS04865 0.50 +0.2
911,579 + MMJJ_RS04865 0.50 +0.2
911,647 - MMJJ_RS04865 0.61 -1.4
911,647 - MMJJ_RS04865 0.61 -0.7
911,648 + MMJJ_RS04865 0.61 +0.3
911,648 + MMJJ_RS04865 0.61 -1.6
911,648 + MMJJ_RS04865 0.61 -1.7
911,680 - MMJJ_RS04865 0.67 -1.0
911,680 - MMJJ_RS04865 0.67 +0.3
911,681 + MMJJ_RS04865 0.67 +0.9
911,681 + MMJJ_RS04865 0.67 +1.1
911,682 - MMJJ_RS04865 0.67 +0.7
911,683 + MMJJ_RS04865 0.67 -1.4
911,722 - MMJJ_RS04865 0.73 +0.7
911,722 - MMJJ_RS04865 0.73 -2.9
911,722 - MMJJ_RS04865 0.73 -0.8
911,722 - MMJJ_RS04865 0.73 -3.8
911,722 - MMJJ_RS04865 0.73 -0.3
911,722 - MMJJ_RS04865 0.73 +0.2
911,722 - MMJJ_RS04865 0.73 +1.1
911,723 + MMJJ_RS04865 0.73 +0.1
911,723 + MMJJ_RS04865 0.73 +0.6
911,723 + MMJJ_RS04865 0.73 +1.6
911,746 - MMJJ_RS04865 0.77 -0.6
911,747 + MMJJ_RS04865 0.77 +0.4
911,747 + MMJJ_RS04865 0.77 -0.0
911,747 + MMJJ_RS04865 0.77 -2.3
911,801 - MMJJ_RS04865 0.86 +0.8
911,802 + MMJJ_RS04865 0.86 +1.3
911,826 - -1.1
911,925 - +0.3
911,925 - -0.6
911,926 + +0.1
911,986 + -0.7
912,001 + MMJJ_RS04870 0.83 -0.2
912,001 + MMJJ_RS04870 0.83 +1.1
912,095 + MMJJ_RS04875 0.82 -1.1
912,100 + -1.6
912,100 + -0.5
912,121 - +0.1
912,136 - +1.6
912,834 - -0.1
912,848 - -4.1
912,849 + +0.2
912,849 + +0.6
912,855 - +0.2
912,856 + +0.2
912,863 - +0.5
912,864 + -0.4
912,864 + +0.6
912,864 + -4.0
912,866 - -0.2
912,868 - +1.3
912,868 - -0.6
912,869 + -1.0
912,886 - +0.6
912,899 + +0.6
912,899 + -0.6
912,915 + +0.3
912,960 - +0.1
912,963 - +0.2

Or see this region's nucleotide sequence