Experiment: McCas-formate glass attached
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS04825 and MMJJ_RS04830 are separated by 7 nucleotides MMJJ_RS04830 and MMJJ_RS04835 are separated by 3 nucleotides MMJJ_RS04835 and MMJJ_RS04840 overlap by 10 nucleotides
MMJJ_RS04825: MMJJ_RS04825 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, at 903,790 to 905,070
_RS04825
MMJJ_RS04830: MMJJ_RS04830 - zinc dependent phospholipase C family protein, at 905,078 to 905,617
_RS04830
MMJJ_RS04835: MMJJ_RS04835 - ABC transporter ATP-binding protein, at 905,621 to 906,589
_RS04835
MMJJ_RS04840: MMJJ_RS04840 - iron ABC transporter permease, at 906,580 to 908,217
_RS04840
Position (kb) 905
906
907 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 904.707 kb on - strand, within MMJJ_RS04825 at 904.725 kb on - strand, within MMJJ_RS04825 at 904.726 kb on + strand, within MMJJ_RS04825 at 904.752 kb on - strand, within MMJJ_RS04825 at 904.752 kb on - strand, within MMJJ_RS04825 at 904.753 kb on + strand, within MMJJ_RS04825 at 904.794 kb on - strand, within MMJJ_RS04825 at 904.797 kb on - strand, within MMJJ_RS04825 at 904.798 kb on + strand, within MMJJ_RS04825 at 904.815 kb on - strand, within MMJJ_RS04825 at 904.816 kb on + strand, within MMJJ_RS04825 at 904.835 kb on - strand, within MMJJ_RS04825 at 904.836 kb on + strand, within MMJJ_RS04825 at 904.836 kb on + strand, within MMJJ_RS04825 at 904.839 kb on + strand, within MMJJ_RS04825 at 904.868 kb on - strand, within MMJJ_RS04825 at 904.869 kb on + strand, within MMJJ_RS04825 at 904.884 kb on - strand, within MMJJ_RS04825 at 904.937 kb on - strand, within MMJJ_RS04825 at 904.968 kb on + strand at 904.968 kb on + strand at 904.971 kb on + strand at 904.974 kb on + strand at 904.981 kb on + strand at 904.999 kb on - strand at 905.000 kb on + strand at 905.000 kb on + strand at 905.000 kb on + strand at 905.000 kb on + strand at 905.004 kb on - strand at 905.004 kb on - strand at 905.004 kb on - strand at 905.004 kb on - strand at 905.005 kb on + strand at 905.005 kb on + strand at 905.032 kb on - strand at 905.032 kb on - strand at 905.033 kb on + strand at 905.033 kb on + strand at 905.035 kb on + strand at 905.069 kb on + strand at 905.072 kb on - strand at 905.078 kb on + strand at 905.088 kb on - strand at 905.090 kb on - strand at 905.155 kb on + strand, within MMJJ_RS04830 at 905.269 kb on - strand, within MMJJ_RS04830 at 905.306 kb on + strand, within MMJJ_RS04830 at 905.306 kb on + strand, within MMJJ_RS04830 at 905.306 kb on + strand, within MMJJ_RS04830 at 905.306 kb on + strand, within MMJJ_RS04830 at 905.317 kb on + strand, within MMJJ_RS04830 at 905.339 kb on - strand, within MMJJ_RS04830 at 905.340 kb on + strand, within MMJJ_RS04830 at 905.340 kb on + strand, within MMJJ_RS04830 at 905.346 kb on - strand, within MMJJ_RS04830 at 905.359 kb on - strand, within MMJJ_RS04830 at 905.364 kb on - strand, within MMJJ_RS04830 at 905.364 kb on - strand, within MMJJ_RS04830 at 905.419 kb on - strand, within MMJJ_RS04830 at 905.420 kb on + strand, within MMJJ_RS04830 at 905.456 kb on + strand, within MMJJ_RS04830 at 905.494 kb on - strand, within MMJJ_RS04830 at 905.496 kb on - strand, within MMJJ_RS04830 at 905.496 kb on - strand, within MMJJ_RS04830 at 905.506 kb on - strand, within MMJJ_RS04830 at 905.507 kb on + strand, within MMJJ_RS04830 at 905.507 kb on + strand, within MMJJ_RS04830 at 905.591 kb on - strand at 905.591 kb on - strand at 905.591 kb on - strand at 905.611 kb on + strand at 905.633 kb on - strand at 905.692 kb on - strand at 905.692 kb on - strand at 905.729 kb on - strand, within MMJJ_RS04835 at 905.730 kb on + strand, within MMJJ_RS04835 at 905.730 kb on + strand, within MMJJ_RS04835 at 905.731 kb on - strand, within MMJJ_RS04835 at 905.731 kb on - strand, within MMJJ_RS04835 at 905.732 kb on + strand, within MMJJ_RS04835 at 905.736 kb on - strand, within MMJJ_RS04835 at 905.736 kb on - strand, within MMJJ_RS04835 at 905.737 kb on + strand, within MMJJ_RS04835 at 905.737 kb on + strand, within MMJJ_RS04835 at 905.737 kb on + strand, within MMJJ_RS04835 at 905.737 kb on + strand, within MMJJ_RS04835 at 905.741 kb on - strand, within MMJJ_RS04835 at 905.742 kb on + strand, within MMJJ_RS04835 at 905.804 kb on - strand, within MMJJ_RS04835 at 905.804 kb on - strand, within MMJJ_RS04835 at 905.804 kb on - strand, within MMJJ_RS04835 at 905.820 kb on + strand, within MMJJ_RS04835 at 905.858 kb on + strand, within MMJJ_RS04835 at 905.861 kb on - strand, within MMJJ_RS04835 at 905.861 kb on - strand, within MMJJ_RS04835 at 905.862 kb on + strand, within MMJJ_RS04835 at 905.864 kb on - strand, within MMJJ_RS04835 at 905.887 kb on - strand, within MMJJ_RS04835 at 905.932 kb on + strand, within MMJJ_RS04835 at 905.935 kb on - strand, within MMJJ_RS04835 at 905.971 kb on - strand, within MMJJ_RS04835 at 905.989 kb on - strand, within MMJJ_RS04835 at 905.989 kb on - strand, within MMJJ_RS04835 at 905.989 kb on - strand, within MMJJ_RS04835 at 905.989 kb on - strand, within MMJJ_RS04835 at 905.990 kb on + strand, within MMJJ_RS04835 at 906.026 kb on - strand, within MMJJ_RS04835 at 906.030 kb on - strand, within MMJJ_RS04835 at 906.031 kb on + strand, within MMJJ_RS04835 at 906.031 kb on + strand, within MMJJ_RS04835 at 906.203 kb on + strand, within MMJJ_RS04835 at 906.357 kb on + strand, within MMJJ_RS04835 at 906.359 kb on - strand, within MMJJ_RS04835 at 906.643 kb on + strand at 906.660 kb on + strand at 906.704 kb on + strand at 906.715 kb on - strand at 906.715 kb on - strand at 906.769 kb on + strand, within MMJJ_RS04840 at 906.777 kb on - strand, within MMJJ_RS04840 at 906.778 kb on + strand, within MMJJ_RS04840 at 906.783 kb on - strand, within MMJJ_RS04840 at 906.783 kb on - strand, within MMJJ_RS04840 at 906.784 kb on + strand, within MMJJ_RS04840 at 906.784 kb on + strand, within MMJJ_RS04840 at 906.784 kb on + strand, within MMJJ_RS04840 at 906.784 kb on + strand, within MMJJ_RS04840 at 906.784 kb on + strand, within MMJJ_RS04840 at 906.786 kb on + strand, within MMJJ_RS04840 at 906.787 kb on - strand, within MMJJ_RS04840 at 906.787 kb on - strand, within MMJJ_RS04840 at 906.788 kb on + strand, within MMJJ_RS04840 at 906.788 kb on + strand, within MMJJ_RS04840 at 906.788 kb on + strand, within MMJJ_RS04840 at 906.788 kb on + strand, within MMJJ_RS04840 at 906.788 kb on + strand, within MMJJ_RS04840 at 906.803 kb on + strand, within MMJJ_RS04840 at 906.817 kb on - strand, within MMJJ_RS04840 at 906.818 kb on + strand, within MMJJ_RS04840 at 906.826 kb on - strand, within MMJJ_RS04840 at 906.836 kb on - strand at 906.836 kb on - strand, within MMJJ_RS04840 at 906.867 kb on - strand, within MMJJ_RS04840 at 906.925 kb on + strand, within MMJJ_RS04840 at 906.985 kb on + strand, within MMJJ_RS04840 at 907.003 kb on + strand, within MMJJ_RS04840 at 907.020 kb on + strand, within MMJJ_RS04840 at 907.070 kb on + strand, within MMJJ_RS04840 at 907.070 kb on + strand, within MMJJ_RS04840 at 907.074 kb on + strand, within MMJJ_RS04840 at 907.107 kb on + strand, within MMJJ_RS04840 at 907.108 kb on - strand at 907.108 kb on - strand, within MMJJ_RS04840 at 907.109 kb on + strand, within MMJJ_RS04840 at 907.109 kb on + strand, within MMJJ_RS04840 at 907.110 kb on - strand, within MMJJ_RS04840 at 907.110 kb on - strand, within MMJJ_RS04840 at 907.110 kb on - strand, within MMJJ_RS04840 at 907.110 kb on - strand, within MMJJ_RS04840 at 907.110 kb on - strand, within MMJJ_RS04840 at 907.110 kb on - strand, within MMJJ_RS04840 at 907.110 kb on - strand, within MMJJ_RS04840 at 907.111 kb on + strand, within MMJJ_RS04840 at 907.111 kb on + strand, within MMJJ_RS04840 at 907.111 kb on + strand, within MMJJ_RS04840 at 907.111 kb on + strand, within MMJJ_RS04840 at 907.111 kb on + strand, within MMJJ_RS04840 at 907.111 kb on + strand, within MMJJ_RS04840 at 907.111 kb on + strand, within MMJJ_RS04840 at 907.113 kb on - strand, within MMJJ_RS04840 at 907.113 kb on - strand, within MMJJ_RS04840 at 907.114 kb on + strand, within MMJJ_RS04840 at 907.114 kb on + strand, within MMJJ_RS04840 at 907.115 kb on - strand, within MMJJ_RS04840 at 907.115 kb on - strand, within MMJJ_RS04840 at 907.116 kb on + strand, within MMJJ_RS04840 at 907.116 kb on + strand, within MMJJ_RS04840 at 907.116 kb on + strand, within MMJJ_RS04840 at 907.116 kb on + strand, within MMJJ_RS04840 at 907.116 kb on + strand, within MMJJ_RS04840 at 907.116 kb on + strand, within MMJJ_RS04840 at 907.171 kb on - strand, within MMJJ_RS04840 at 907.171 kb on - strand, within MMJJ_RS04840 at 907.221 kb on + strand, within MMJJ_RS04840 at 907.226 kb on + strand, within MMJJ_RS04840 at 907.238 kb on - strand, within MMJJ_RS04840 at 907.271 kb on + strand, within MMJJ_RS04840 at 907.346 kb on + strand, within MMJJ_RS04840 at 907.348 kb on + strand, within MMJJ_RS04840 at 907.350 kb on - strand, within MMJJ_RS04840 at 907.350 kb on - strand, within MMJJ_RS04840 at 907.350 kb on - strand, within MMJJ_RS04840 at 907.351 kb on + strand, within MMJJ_RS04840 at 907.351 kb on + strand, within MMJJ_RS04840 at 907.351 kb on + strand, within MMJJ_RS04840 at 907.354 kb on - strand, within MMJJ_RS04840 at 907.369 kb on - strand, within MMJJ_RS04840 at 907.403 kb on - strand, within MMJJ_RS04840 at 907.403 kb on - strand, within MMJJ_RS04840 at 907.412 kb on - strand, within MMJJ_RS04840 at 907.455 kb on - strand, within MMJJ_RS04840 at 907.503 kb on + strand, within MMJJ_RS04840 at 907.567 kb on + strand, within MMJJ_RS04840 at 907.579 kb on - strand, within MMJJ_RS04840
Per-strain Table
Position Strand Gene LocusTag Fraction McCas-formate glass attached remove 904,707 - MMJJ_RS04825 0.72 +0.4 904,725 - MMJJ_RS04825 0.73 -1.1 904,726 + MMJJ_RS04825 0.73 -0.2 904,752 - MMJJ_RS04825 0.75 +0.5 904,752 - MMJJ_RS04825 0.75 +0.3 904,753 + MMJJ_RS04825 0.75 +0.2 904,794 - MMJJ_RS04825 0.78 -0.0 904,797 - MMJJ_RS04825 0.79 +0.4 904,798 + MMJJ_RS04825 0.79 +0.8 904,815 - MMJJ_RS04825 0.80 +0.3 904,816 + MMJJ_RS04825 0.80 +0.5 904,835 - MMJJ_RS04825 0.82 +0.0 904,836 + MMJJ_RS04825 0.82 -0.9 904,836 + MMJJ_RS04825 0.82 -1.2 904,839 + MMJJ_RS04825 0.82 +0.2 904,868 - MMJJ_RS04825 0.84 +0.3 904,869 + MMJJ_RS04825 0.84 -0.3 904,884 - MMJJ_RS04825 0.85 +0.8 904,937 - MMJJ_RS04825 0.90 +0.9 904,968 + -0.9 904,968 + +0.4 904,971 + -0.7 904,974 + -4.1 904,981 + -0.4 904,999 - +1.5 905,000 + +1.0 905,000 + -2.1 905,000 + -0.7 905,000 + +0.6 905,004 - -0.1 905,004 - +0.5 905,004 - -0.2 905,004 - +0.3 905,005 + +0.4 905,005 + +0.1 905,032 - -0.2 905,032 - +0.1 905,033 + +0.6 905,033 + +0.2 905,035 + +0.4 905,069 + +0.3 905,072 - -0.8 905,078 + +0.5 905,088 - +0.4 905,090 - -0.9 905,155 + MMJJ_RS04830 0.14 +0.8 905,269 - MMJJ_RS04830 0.35 -0.1 905,306 + MMJJ_RS04830 0.42 +0.3 905,306 + MMJJ_RS04830 0.42 -0.7 905,306 + MMJJ_RS04830 0.42 +0.5 905,306 + MMJJ_RS04830 0.42 -0.1 905,317 + MMJJ_RS04830 0.44 +1.1 905,339 - MMJJ_RS04830 0.48 -0.4 905,340 + MMJJ_RS04830 0.49 +0.5 905,340 + MMJJ_RS04830 0.49 -1.0 905,346 - MMJJ_RS04830 0.50 -0.1 905,359 - MMJJ_RS04830 0.52 -0.6 905,364 - MMJJ_RS04830 0.53 -0.3 905,364 - MMJJ_RS04830 0.53 +0.5 905,419 - MMJJ_RS04830 0.63 +0.4 905,420 + MMJJ_RS04830 0.63 -0.4 905,456 + MMJJ_RS04830 0.70 -0.1 905,494 - MMJJ_RS04830 0.77 -0.2 905,496 - MMJJ_RS04830 0.77 +0.1 905,496 - MMJJ_RS04830 0.77 +0.9 905,506 - MMJJ_RS04830 0.79 +0.1 905,507 + MMJJ_RS04830 0.79 +0.0 905,507 + MMJJ_RS04830 0.79 +0.6 905,591 - -0.2 905,591 - -0.3 905,591 - +0.8 905,611 + +0.1 905,633 - +0.3 905,692 - -0.3 905,692 - -0.7 905,729 - MMJJ_RS04835 0.11 -0.9 905,730 + MMJJ_RS04835 0.11 -0.5 905,730 + MMJJ_RS04835 0.11 +0.6 905,731 - MMJJ_RS04835 0.11 +0.3 905,731 - MMJJ_RS04835 0.11 +0.2 905,732 + MMJJ_RS04835 0.11 +0.6 905,736 - MMJJ_RS04835 0.12 -2.0 905,736 - MMJJ_RS04835 0.12 +0.8 905,737 + MMJJ_RS04835 0.12 -0.0 905,737 + MMJJ_RS04835 0.12 -0.5 905,737 + MMJJ_RS04835 0.12 -0.6 905,737 + MMJJ_RS04835 0.12 +0.9 905,741 - MMJJ_RS04835 0.12 +0.4 905,742 + MMJJ_RS04835 0.12 +0.1 905,804 - MMJJ_RS04835 0.19 -1.4 905,804 - MMJJ_RS04835 0.19 -3.4 905,804 - MMJJ_RS04835 0.19 -0.7 905,820 + MMJJ_RS04835 0.21 +0.5 905,858 + MMJJ_RS04835 0.24 -0.3 905,861 - MMJJ_RS04835 0.25 +0.0 905,861 - MMJJ_RS04835 0.25 -0.1 905,862 + MMJJ_RS04835 0.25 +2.9 905,864 - MMJJ_RS04835 0.25 -2.0 905,887 - MMJJ_RS04835 0.27 +1.0 905,932 + MMJJ_RS04835 0.32 +1.2 905,935 - MMJJ_RS04835 0.32 -0.1 905,971 - MMJJ_RS04835 0.36 +0.8 905,989 - MMJJ_RS04835 0.38 +0.4 905,989 - MMJJ_RS04835 0.38 +1.6 905,989 - MMJJ_RS04835 0.38 +0.4 905,989 - MMJJ_RS04835 0.38 +0.1 905,990 + MMJJ_RS04835 0.38 -0.3 906,026 - MMJJ_RS04835 0.42 +0.4 906,030 - MMJJ_RS04835 0.42 +0.7 906,031 + MMJJ_RS04835 0.42 +0.1 906,031 + MMJJ_RS04835 0.42 +0.3 906,203 + MMJJ_RS04835 0.60 -1.8 906,357 + MMJJ_RS04835 0.76 +0.5 906,359 - MMJJ_RS04835 0.76 +0.6 906,643 + +0.5 906,660 + +0.7 906,704 + -0.7 906,715 - -0.6 906,715 - +0.1 906,769 + MMJJ_RS04840 0.12 -3.1 906,777 - MMJJ_RS04840 0.12 +0.8 906,778 + MMJJ_RS04840 0.12 +0.2 906,783 - MMJJ_RS04840 0.12 -4.7 906,783 - MMJJ_RS04840 0.12 -0.2 906,784 + MMJJ_RS04840 0.12 -1.0 906,784 + MMJJ_RS04840 0.12 +1.1 906,784 + MMJJ_RS04840 0.12 +0.0 906,784 + MMJJ_RS04840 0.12 +1.7 906,784 + MMJJ_RS04840 0.12 -2.4 906,786 + MMJJ_RS04840 0.13 +0.5 906,787 - MMJJ_RS04840 0.13 -1.6 906,787 - MMJJ_RS04840 0.13 -0.4 906,788 + MMJJ_RS04840 0.13 +0.6 906,788 + MMJJ_RS04840 0.13 +0.6 906,788 + MMJJ_RS04840 0.13 -2.3 906,788 + MMJJ_RS04840 0.13 -3.7 906,788 + MMJJ_RS04840 0.13 +0.1 906,803 + MMJJ_RS04840 0.14 -0.4 906,817 - MMJJ_RS04840 0.14 -1.0 906,818 + MMJJ_RS04840 0.15 +1.7 906,826 - MMJJ_RS04840 0.15 -4.6 906,836 - -0.7 906,836 - MMJJ_RS04840 0.16 -4.6 906,867 - MMJJ_RS04840 0.18 -0.3 906,925 + MMJJ_RS04840 0.21 +1.6 906,985 + MMJJ_RS04840 0.25 +0.4 907,003 + MMJJ_RS04840 0.26 -0.2 907,020 + MMJJ_RS04840 0.27 +0.3 907,070 + MMJJ_RS04840 0.30 -1.6 907,070 + MMJJ_RS04840 0.30 -0.1 907,074 + MMJJ_RS04840 0.30 -1.1 907,107 + MMJJ_RS04840 0.32 +0.0 907,108 - -0.2 907,108 - MMJJ_RS04840 0.32 -0.0 907,109 + MMJJ_RS04840 0.32 -0.4 907,109 + MMJJ_RS04840 0.32 -1.6 907,110 - MMJJ_RS04840 0.32 +0.5 907,110 - MMJJ_RS04840 0.32 -3.0 907,110 - MMJJ_RS04840 0.32 -0.1 907,110 - MMJJ_RS04840 0.32 +0.3 907,110 - MMJJ_RS04840 0.32 +0.2 907,110 - MMJJ_RS04840 0.32 -0.4 907,110 - MMJJ_RS04840 0.32 -0.2 907,111 + MMJJ_RS04840 0.32 -2.0 907,111 + MMJJ_RS04840 0.32 -0.5 907,111 + MMJJ_RS04840 0.32 +0.5 907,111 + MMJJ_RS04840 0.32 -4.5 907,111 + MMJJ_RS04840 0.32 +1.3 907,111 + MMJJ_RS04840 0.32 -1.9 907,111 + MMJJ_RS04840 0.32 +1.0 907,113 - MMJJ_RS04840 0.33 +0.5 907,113 - MMJJ_RS04840 0.33 -0.1 907,114 + MMJJ_RS04840 0.33 +0.1 907,114 + MMJJ_RS04840 0.33 +1.1 907,115 - MMJJ_RS04840 0.33 -2.1 907,115 - MMJJ_RS04840 0.33 +1.3 907,116 + MMJJ_RS04840 0.33 +0.5 907,116 + MMJJ_RS04840 0.33 +0.6 907,116 + MMJJ_RS04840 0.33 -0.1 907,116 + MMJJ_RS04840 0.33 +0.7 907,116 + MMJJ_RS04840 0.33 +0.2 907,116 + MMJJ_RS04840 0.33 -0.5 907,171 - MMJJ_RS04840 0.36 -0.3 907,171 - MMJJ_RS04840 0.36 +0.4 907,221 + MMJJ_RS04840 0.39 -0.2 907,226 + MMJJ_RS04840 0.39 +0.2 907,238 - MMJJ_RS04840 0.40 -2.0 907,271 + MMJJ_RS04840 0.42 +0.2 907,346 + MMJJ_RS04840 0.47 +0.9 907,348 + MMJJ_RS04840 0.47 +0.3 907,350 - MMJJ_RS04840 0.47 -2.3 907,350 - MMJJ_RS04840 0.47 -1.9 907,350 - MMJJ_RS04840 0.47 +0.4 907,351 + MMJJ_RS04840 0.47 +0.1 907,351 + MMJJ_RS04840 0.47 -0.4 907,351 + MMJJ_RS04840 0.47 +0.6 907,354 - MMJJ_RS04840 0.47 -0.7 907,369 - MMJJ_RS04840 0.48 +0.0 907,403 - MMJJ_RS04840 0.50 +1.2 907,403 - MMJJ_RS04840 0.50 +0.1 907,412 - MMJJ_RS04840 0.51 -0.0 907,455 - MMJJ_RS04840 0.53 +0.4 907,503 + MMJJ_RS04840 0.56 +0.3 907,567 + MMJJ_RS04840 0.60 -0.4 907,579 - MMJJ_RS04840 0.61 -1.2
Or see this region's nucleotide sequence