Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS04765

Experiment: McCas-formate glass attached

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS04760 and MMJJ_RS04765 are separated by 40 nucleotidesMMJJ_RS04765 and MMJJ_RS04770 are separated by 18 nucleotides MMJJ_RS04760: MMJJ_RS04760 - 5,10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC, at 893,108 to 894,640 _RS04760 MMJJ_RS04765: MMJJ_RS04765 - metal-dependent hydrolase, at 894,681 to 895,355 _RS04765 MMJJ_RS04770: MMJJ_RS04770 - formate-dependent phosphoribosylglycinamide formyltransferase, at 895,374 to 896,540 _RS04770 Position (kb) 894 895 896Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 893.811 kb on - strand, within MMJJ_RS04760at 893.811 kb on - strand, within MMJJ_RS04760at 893.811 kb on - strand, within MMJJ_RS04760at 893.874 kb on - strand, within MMJJ_RS04760at 893.874 kb on - strand, within MMJJ_RS04760at 893.874 kb on - strand, within MMJJ_RS04760at 893.875 kb on + strand, within MMJJ_RS04760at 893.875 kb on + strand, within MMJJ_RS04760at 893.875 kb on + strand, within MMJJ_RS04760at 893.875 kb on + strand, within MMJJ_RS04760at 893.875 kb on + strand, within MMJJ_RS04760at 893.880 kb on - strand, within MMJJ_RS04760at 893.881 kb on + strand, within MMJJ_RS04760at 893.899 kb on - strand, within MMJJ_RS04760at 894.037 kb on + strand, within MMJJ_RS04760at 894.037 kb on + strand, within MMJJ_RS04760at 894.073 kb on - strand, within MMJJ_RS04760at 894.073 kb on - strand, within MMJJ_RS04760at 894.073 kb on - strand, within MMJJ_RS04760at 894.073 kb on - strand, within MMJJ_RS04760at 894.073 kb on - strand, within MMJJ_RS04760at 894.073 kb on - strand, within MMJJ_RS04760at 894.074 kb on + strand, within MMJJ_RS04760at 894.229 kb on - strand, within MMJJ_RS04760at 894.246 kb on - strand, within MMJJ_RS04760at 894.246 kb on - strand, within MMJJ_RS04760at 894.246 kb on - strand, within MMJJ_RS04760at 894.246 kb on - strand, within MMJJ_RS04760at 894.247 kb on + strand, within MMJJ_RS04760at 894.247 kb on + strand, within MMJJ_RS04760at 894.247 kb on + strand, within MMJJ_RS04760at 894.247 kb on + strand, within MMJJ_RS04760at 894.247 kb on + strand, within MMJJ_RS04760at 894.247 kb on + strand, within MMJJ_RS04760at 894.247 kb on + strand, within MMJJ_RS04760at 894.247 kb on + strand, within MMJJ_RS04760at 894.248 kb on - strand, within MMJJ_RS04760at 894.269 kb on - strand, within MMJJ_RS04760at 894.270 kb on + strand, within MMJJ_RS04760at 894.276 kb on - strand, within MMJJ_RS04760at 894.276 kb on - strand, within MMJJ_RS04760at 894.302 kb on + strand, within MMJJ_RS04760at 894.305 kb on + strand, within MMJJ_RS04760at 894.317 kb on - strand, within MMJJ_RS04760at 894.318 kb on + strand, within MMJJ_RS04760at 894.318 kb on + strand, within MMJJ_RS04760at 894.329 kb on - strand, within MMJJ_RS04760at 894.329 kb on - strand, within MMJJ_RS04760at 894.366 kb on - strand, within MMJJ_RS04760at 894.401 kb on - strand, within MMJJ_RS04760at 894.401 kb on - strand, within MMJJ_RS04760at 894.401 kb on - strand, within MMJJ_RS04760at 894.401 kb on - strand, within MMJJ_RS04760at 894.401 kb on - strand, within MMJJ_RS04760at 894.402 kb on + strand, within MMJJ_RS04760at 894.402 kb on + strand, within MMJJ_RS04760at 894.402 kb on + strand, within MMJJ_RS04760at 894.402 kb on + strand, within MMJJ_RS04760at 894.404 kb on + strand, within MMJJ_RS04760at 894.444 kb on - strand, within MMJJ_RS04760at 894.444 kb on - strand, within MMJJ_RS04760at 894.444 kb on - strand, within MMJJ_RS04760at 894.445 kb on + strand, within MMJJ_RS04760at 894.445 kb on + strand, within MMJJ_RS04760at 894.445 kb on + strand, within MMJJ_RS04760at 894.445 kb on + strand, within MMJJ_RS04760at 894.445 kb on + strand, within MMJJ_RS04760at 894.445 kb on + strand, within MMJJ_RS04760at 894.445 kb on + strand, within MMJJ_RS04760at 894.445 kb on + strand, within MMJJ_RS04760at 894.446 kb on - strand, within MMJJ_RS04760at 894.446 kb on - strand, within MMJJ_RS04760at 894.446 kb on - strand, within MMJJ_RS04760at 894.446 kb on - strand, within MMJJ_RS04760at 894.447 kb on + strand, within MMJJ_RS04760at 894.447 kb on + strand, within MMJJ_RS04760at 894.447 kb on + strand, within MMJJ_RS04760at 894.447 kb on + strand, within MMJJ_RS04760at 894.447 kb on + strand, within MMJJ_RS04760at 894.447 kb on + strand, within MMJJ_RS04760at 894.447 kb on + strand, within MMJJ_RS04760at 894.450 kb on - strand, within MMJJ_RS04760at 894.450 kb on - strand, within MMJJ_RS04760at 894.450 kb on - strand, within MMJJ_RS04760at 894.496 kb on + strandat 894.511 kb on + strandat 894.518 kb on - strandat 894.519 kb on + strandat 894.519 kb on + strandat 894.575 kb on + strandat 894.577 kb on - strandat 894.578 kb on + strandat 894.578 kb on + strandat 894.601 kb on + strandat 894.634 kb on + strandat 894.634 kb on + strandat 894.634 kb on + strandat 894.698 kb on - strandat 894.699 kb on + strandat 894.699 kb on + strandat 894.732 kb on + strandat 894.732 kb on + strandat 894.761 kb on + strand, within MMJJ_RS04765at 894.788 kb on + strand, within MMJJ_RS04765at 894.799 kb on - strand, within MMJJ_RS04765at 894.812 kb on + strand, within MMJJ_RS04765at 894.812 kb on + strand, within MMJJ_RS04765at 894.828 kb on - strand, within MMJJ_RS04765at 894.828 kb on - strand, within MMJJ_RS04765at 894.828 kb on - strand, within MMJJ_RS04765at 894.828 kb on - strand, within MMJJ_RS04765at 894.828 kb on - strand, within MMJJ_RS04765at 894.828 kb on - strand, within MMJJ_RS04765at 894.829 kb on + strand, within MMJJ_RS04765at 894.829 kb on + strand, within MMJJ_RS04765at 894.830 kb on - strand, within MMJJ_RS04765at 894.830 kb on - strand, within MMJJ_RS04765at 894.830 kb on - strand, within MMJJ_RS04765at 894.831 kb on + strand, within MMJJ_RS04765at 894.831 kb on + strand, within MMJJ_RS04765at 894.846 kb on + strand, within MMJJ_RS04765at 894.867 kb on - strand, within MMJJ_RS04765at 894.867 kb on - strand, within MMJJ_RS04765at 894.867 kb on - strand, within MMJJ_RS04765at 894.867 kb on - strand, within MMJJ_RS04765at 894.871 kb on - strand, within MMJJ_RS04765at 894.871 kb on - strand, within MMJJ_RS04765at 894.885 kb on - strand, within MMJJ_RS04765at 894.935 kb on - strand, within MMJJ_RS04765at 894.949 kb on + strand, within MMJJ_RS04765at 894.995 kb on - strand, within MMJJ_RS04765at 895.088 kb on - strand, within MMJJ_RS04765at 895.089 kb on + strand, within MMJJ_RS04765at 895.160 kb on - strand, within MMJJ_RS04765at 895.161 kb on + strand, within MMJJ_RS04765at 895.185 kb on - strand, within MMJJ_RS04765at 895.190 kb on + strand, within MMJJ_RS04765at 895.209 kb on - strand, within MMJJ_RS04765at 895.277 kb on - strand, within MMJJ_RS04765at 895.287 kb on + strand, within MMJJ_RS04765at 895.599 kb on - strand, within MMJJ_RS04770at 895.677 kb on + strand, within MMJJ_RS04770at 895.707 kb on - strand, within MMJJ_RS04770at 896.085 kb on - strand, within MMJJ_RS04770at 896.086 kb on + strand, within MMJJ_RS04770at 896.090 kb on - strandat 896.280 kb on + strand, within MMJJ_RS04770at 896.310 kb on - strand, within MMJJ_RS04770

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas-formate glass attached
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893,811 - MMJJ_RS04760 0.46 -1.9
893,811 - MMJJ_RS04760 0.46 +0.4
893,811 - MMJJ_RS04760 0.46 +0.3
893,874 - MMJJ_RS04760 0.50 +1.0
893,874 - MMJJ_RS04760 0.50 +0.6
893,874 - MMJJ_RS04760 0.50 -0.1
893,875 + MMJJ_RS04760 0.50 +1.4
893,875 + MMJJ_RS04760 0.50 +0.3
893,875 + MMJJ_RS04760 0.50 -3.7
893,875 + MMJJ_RS04760 0.50 +0.6
893,875 + MMJJ_RS04760 0.50 -1.5
893,880 - MMJJ_RS04760 0.50 -0.5
893,881 + MMJJ_RS04760 0.50 -1.1
893,899 - MMJJ_RS04760 0.52 -0.7
894,037 + MMJJ_RS04760 0.61 +2.6
894,037 + MMJJ_RS04760 0.61 +1.0
894,073 - MMJJ_RS04760 0.63 +0.3
894,073 - MMJJ_RS04760 0.63 +0.1
894,073 - MMJJ_RS04760 0.63 +0.5
894,073 - MMJJ_RS04760 0.63 -0.1
894,073 - MMJJ_RS04760 0.63 -3.3
894,073 - MMJJ_RS04760 0.63 +0.4
894,074 + MMJJ_RS04760 0.63 +0.7
894,229 - MMJJ_RS04760 0.73 -0.5
894,246 - MMJJ_RS04760 0.74 +0.6
894,246 - MMJJ_RS04760 0.74 -0.0
894,246 - MMJJ_RS04760 0.74 -2.8
894,246 - MMJJ_RS04760 0.74 -1.1
894,247 + MMJJ_RS04760 0.74 +0.6
894,247 + MMJJ_RS04760 0.74 -1.9
894,247 + MMJJ_RS04760 0.74 -4.0
894,247 + MMJJ_RS04760 0.74 +1.0
894,247 + MMJJ_RS04760 0.74 +0.8
894,247 + MMJJ_RS04760 0.74 -4.0
894,247 + MMJJ_RS04760 0.74 -1.1
894,247 + MMJJ_RS04760 0.74 -2.7
894,248 - MMJJ_RS04760 0.74 +0.4
894,269 - MMJJ_RS04760 0.76 +0.8
894,270 + MMJJ_RS04760 0.76 +0.6
894,276 - MMJJ_RS04760 0.76 -4.7
894,276 - MMJJ_RS04760 0.76 -2.4
894,302 + MMJJ_RS04760 0.78 +0.9
894,305 + MMJJ_RS04760 0.78 -1.8
894,317 - MMJJ_RS04760 0.79 -1.3
894,318 + MMJJ_RS04760 0.79 -1.2
894,318 + MMJJ_RS04760 0.79 +0.6
894,329 - MMJJ_RS04760 0.80 +1.2
894,329 - MMJJ_RS04760 0.80 +0.2
894,366 - MMJJ_RS04760 0.82 +0.0
894,401 - MMJJ_RS04760 0.84 +1.3
894,401 - MMJJ_RS04760 0.84 -0.7
894,401 - MMJJ_RS04760 0.84 -0.4
894,401 - MMJJ_RS04760 0.84 -2.0
894,401 - MMJJ_RS04760 0.84 +0.6
894,402 + MMJJ_RS04760 0.84 -1.8
894,402 + MMJJ_RS04760 0.84 +0.6
894,402 + MMJJ_RS04760 0.84 -2.3
894,402 + MMJJ_RS04760 0.84 -0.9
894,404 + MMJJ_RS04760 0.85 -0.4
894,444 - MMJJ_RS04760 0.87 -1.1
894,444 - MMJJ_RS04760 0.87 -4.0
894,444 - MMJJ_RS04760 0.87 -3.3
894,445 + MMJJ_RS04760 0.87 +0.0
894,445 + MMJJ_RS04760 0.87 -0.2
894,445 + MMJJ_RS04760 0.87 +0.5
894,445 + MMJJ_RS04760 0.87 -3.8
894,445 + MMJJ_RS04760 0.87 +0.7
894,445 + MMJJ_RS04760 0.87 +1.4
894,445 + MMJJ_RS04760 0.87 -0.1
894,445 + MMJJ_RS04760 0.87 -0.3
894,446 - MMJJ_RS04760 0.87 -4.8
894,446 - MMJJ_RS04760 0.87 +0.1
894,446 - MMJJ_RS04760 0.87 +0.3
894,446 - MMJJ_RS04760 0.87 -0.5
894,447 + MMJJ_RS04760 0.87 -2.0
894,447 + MMJJ_RS04760 0.87 -3.3
894,447 + MMJJ_RS04760 0.87 +0.6
894,447 + MMJJ_RS04760 0.87 -0.5
894,447 + MMJJ_RS04760 0.87 -1.4
894,447 + MMJJ_RS04760 0.87 +0.9
894,447 + MMJJ_RS04760 0.87 +0.4
894,450 - MMJJ_RS04760 0.88 -1.1
894,450 - MMJJ_RS04760 0.88 -1.7
894,450 - MMJJ_RS04760 0.88 +0.3
894,496 + +0.9
894,511 + +0.2
894,518 - +0.1
894,519 + -0.3
894,519 + -0.7
894,575 + -0.1
894,577 - -3.2
894,578 + -0.3
894,578 + +0.4
894,601 + -0.2
894,634 + +0.8
894,634 + +0.8
894,634 + -0.7
894,698 - +1.2
894,699 + -0.0
894,699 + +0.5
894,732 + -0.0
894,732 + -2.0
894,761 + MMJJ_RS04765 0.12 -4.9
894,788 + MMJJ_RS04765 0.16 +1.4
894,799 - MMJJ_RS04765 0.17 -2.0
894,812 + MMJJ_RS04765 0.19 +1.7
894,812 + MMJJ_RS04765 0.19 +2.8
894,828 - MMJJ_RS04765 0.22 +1.0
894,828 - MMJJ_RS04765 0.22 -3.2
894,828 - MMJJ_RS04765 0.22 +1.5
894,828 - MMJJ_RS04765 0.22 +0.4
894,828 - MMJJ_RS04765 0.22 -1.9
894,828 - MMJJ_RS04765 0.22 +0.1
894,829 + MMJJ_RS04765 0.22 -0.0
894,829 + MMJJ_RS04765 0.22 -3.3
894,830 - MMJJ_RS04765 0.22 -2.1
894,830 - MMJJ_RS04765 0.22 +1.1
894,830 - MMJJ_RS04765 0.22 +0.2
894,831 + MMJJ_RS04765 0.22 -2.7
894,831 + MMJJ_RS04765 0.22 +0.9
894,846 + MMJJ_RS04765 0.24 +0.7
894,867 - MMJJ_RS04765 0.28 -1.8
894,867 - MMJJ_RS04765 0.28 -3.2
894,867 - MMJJ_RS04765 0.28 +1.4
894,867 - MMJJ_RS04765 0.28 -1.8
894,871 - MMJJ_RS04765 0.28 -0.4
894,871 - MMJJ_RS04765 0.28 -2.2
894,885 - MMJJ_RS04765 0.30 +0.8
894,935 - MMJJ_RS04765 0.38 -2.1
894,949 + MMJJ_RS04765 0.40 -1.7
894,995 - MMJJ_RS04765 0.47 -0.9
895,088 - MMJJ_RS04765 0.60 -1.9
895,089 + MMJJ_RS04765 0.60 +0.8
895,160 - MMJJ_RS04765 0.71 -2.2
895,161 + MMJJ_RS04765 0.71 -3.6
895,185 - MMJJ_RS04765 0.75 +1.0
895,190 + MMJJ_RS04765 0.75 +0.2
895,209 - MMJJ_RS04765 0.78 +1.8
895,277 - MMJJ_RS04765 0.88 -1.2
895,287 + MMJJ_RS04765 0.90 -0.9
895,599 - MMJJ_RS04770 0.19 +0.2
895,677 + MMJJ_RS04770 0.26 -2.7
895,707 - MMJJ_RS04770 0.29 -0.2
896,085 - MMJJ_RS04770 0.61 -2.3
896,086 + MMJJ_RS04770 0.61 +2.3
896,090 - -1.3
896,280 + MMJJ_RS04770 0.78 -2.0
896,310 - MMJJ_RS04770 0.80 -0.2

Or see this region's nucleotide sequence