Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS03825

Experiment: McCas-formate glass attached

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS03820 and MMJJ_RS03825 are separated by 25 nucleotidesMMJJ_RS03825 and MMJJ_RS03830 are separated by 37 nucleotidesMMJJ_RS03830 and MMJJ_RS03835 are separated by 5 nucleotides MMJJ_RS03820: MMJJ_RS03820 - hydrogenase formation protein HypD, at 710,784 to 711,866 _RS03820 MMJJ_RS03825: MMJJ_RS03825 - DUF1624 domain-containing protein, at 711,892 to 712,632 _RS03825 MMJJ_RS03830: MMJJ_RS03830 - CBS domain-containing protein, at 712,670 to 713,464 _RS03830 MMJJ_RS03835: MMJJ_RS03835 - DUF504 domain-containing protein, at 713,470 to 713,700 _RS03835 Position (kb) 711 712 713Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 710.991 kb on + strand, within MMJJ_RS03820at 711.066 kb on - strandat 711.066 kb on - strandat 711.067 kb on + strand, within MMJJ_RS03820at 711.067 kb on + strand, within MMJJ_RS03820at 711.238 kb on - strand, within MMJJ_RS03820at 711.241 kb on - strand, within MMJJ_RS03820at 711.334 kb on - strand, within MMJJ_RS03820at 711.387 kb on - strand, within MMJJ_RS03820at 711.388 kb on + strand, within MMJJ_RS03820at 711.388 kb on + strandat 711.390 kb on - strand, within MMJJ_RS03820at 711.390 kb on - strand, within MMJJ_RS03820at 711.391 kb on + strandat 711.476 kb on + strand, within MMJJ_RS03820at 711.476 kb on + strandat 711.487 kb on - strand, within MMJJ_RS03820at 711.849 kb on - strandat 711.854 kb on - strandat 711.861 kb on + strandat 711.864 kb on - strandat 711.868 kb on - strandat 711.868 kb on - strandat 711.868 kb on - strandat 711.868 kb on - strandat 711.868 kb on - strandat 711.868 kb on - strandat 711.868 kb on - strandat 711.868 kb on - strandat 711.868 kb on - strandat 711.868 kb on - strandat 711.869 kb on + strandat 711.869 kb on + strandat 711.873 kb on - strandat 711.894 kb on + strandat 711.914 kb on + strandat 711.926 kb on + strandat 711.963 kb on - strandat 711.965 kb on - strandat 711.966 kb on + strand, within MMJJ_RS03825at 711.971 kb on + strand, within MMJJ_RS03825at 711.978 kb on - strand, within MMJJ_RS03825at 711.978 kb on - strand, within MMJJ_RS03825at 711.978 kb on - strand, within MMJJ_RS03825at 711.978 kb on - strand, within MMJJ_RS03825at 711.997 kb on - strand, within MMJJ_RS03825at 711.998 kb on + strand, within MMJJ_RS03825at 711.998 kb on + strand, within MMJJ_RS03825at 712.087 kb on - strand, within MMJJ_RS03825at 712.087 kb on - strand, within MMJJ_RS03825at 712.088 kb on + strand, within MMJJ_RS03825at 712.088 kb on + strand, within MMJJ_RS03825at 712.091 kb on - strand, within MMJJ_RS03825at 712.091 kb on - strand, within MMJJ_RS03825at 712.091 kb on - strand, within MMJJ_RS03825at 712.091 kb on - strand, within MMJJ_RS03825at 712.092 kb on + strand, within MMJJ_RS03825at 712.092 kb on + strand, within MMJJ_RS03825at 712.094 kb on + strand, within MMJJ_RS03825at 712.121 kb on - strand, within MMJJ_RS03825at 712.122 kb on + strand, within MMJJ_RS03825at 712.151 kb on + strand, within MMJJ_RS03825at 712.166 kb on + strand, within MMJJ_RS03825at 712.166 kb on + strand, within MMJJ_RS03825at 712.172 kb on - strand, within MMJJ_RS03825at 712.173 kb on + strand, within MMJJ_RS03825at 712.173 kb on + strand, within MMJJ_RS03825at 712.173 kb on + strand, within MMJJ_RS03825at 712.176 kb on - strand, within MMJJ_RS03825at 712.180 kb on - strand, within MMJJ_RS03825at 712.199 kb on + strand, within MMJJ_RS03825at 712.207 kb on - strand, within MMJJ_RS03825at 712.208 kb on + strand, within MMJJ_RS03825at 712.208 kb on + strand, within MMJJ_RS03825at 712.208 kb on + strand, within MMJJ_RS03825at 712.261 kb on - strand, within MMJJ_RS03825at 712.276 kb on + strand, within MMJJ_RS03825at 712.311 kb on + strand, within MMJJ_RS03825at 712.311 kb on + strand, within MMJJ_RS03825at 712.312 kb on - strand, within MMJJ_RS03825at 712.351 kb on - strand, within MMJJ_RS03825at 712.352 kb on + strand, within MMJJ_RS03825at 712.352 kb on + strand, within MMJJ_RS03825at 712.353 kb on - strand, within MMJJ_RS03825at 712.354 kb on + strand, within MMJJ_RS03825at 712.367 kb on + strand, within MMJJ_RS03825at 712.395 kb on + strand, within MMJJ_RS03825at 712.395 kb on + strand, within MMJJ_RS03825at 712.446 kb on - strand, within MMJJ_RS03825at 712.464 kb on - strand, within MMJJ_RS03825at 712.465 kb on + strand, within MMJJ_RS03825at 712.465 kb on + strand, within MMJJ_RS03825at 712.469 kb on + strand, within MMJJ_RS03825at 712.518 kb on + strand, within MMJJ_RS03825at 712.518 kb on + strand, within MMJJ_RS03825at 712.544 kb on + strand, within MMJJ_RS03825at 712.553 kb on + strand, within MMJJ_RS03825at 712.567 kb on + strandat 712.567 kb on + strandat 712.576 kb on - strandat 712.576 kb on - strandat 712.577 kb on + strandat 712.577 kb on + strandat 712.579 kb on - strandat 712.650 kb on + strandat 712.658 kb on + strandat 712.684 kb on - strandat 712.699 kb on - strandat 712.700 kb on + strandat 712.700 kb on + strandat 712.700 kb on + strandat 712.700 kb on + strandat 712.700 kb on + strandat 712.701 kb on - strandat 712.741 kb on - strandat 712.745 kb on + strandat 712.811 kb on - strand, within MMJJ_RS03830at 712.893 kb on - strand, within MMJJ_RS03830at 712.919 kb on + strand, within MMJJ_RS03830at 712.949 kb on - strand, within MMJJ_RS03830at 712.950 kb on + strand, within MMJJ_RS03830at 712.957 kb on + strand, within MMJJ_RS03830at 713.006 kb on - strand, within MMJJ_RS03830at 713.006 kb on - strand, within MMJJ_RS03830at 713.007 kb on + strand, within MMJJ_RS03830at 713.024 kb on + strand, within MMJJ_RS03830at 713.038 kb on - strand, within MMJJ_RS03830at 713.039 kb on + strand, within MMJJ_RS03830at 713.039 kb on + strand, within MMJJ_RS03830at 713.039 kb on + strand, within MMJJ_RS03830at 713.043 kb on + strand, within MMJJ_RS03830at 713.065 kb on + strand, within MMJJ_RS03830at 713.124 kb on + strand, within MMJJ_RS03830at 713.124 kb on + strand, within MMJJ_RS03830at 713.124 kb on + strand, within MMJJ_RS03830at 713.124 kb on + strand, within MMJJ_RS03830at 713.124 kb on + strand, within MMJJ_RS03830at 713.197 kb on - strand, within MMJJ_RS03830at 713.198 kb on + strand, within MMJJ_RS03830at 713.222 kb on - strand, within MMJJ_RS03830at 713.242 kb on - strand, within MMJJ_RS03830at 713.280 kb on + strand, within MMJJ_RS03830at 713.299 kb on - strand, within MMJJ_RS03830at 713.306 kb on + strand, within MMJJ_RS03830at 713.391 kb on + strandat 713.446 kb on + strandat 713.459 kb on - strandat 713.460 kb on + strandat 713.506 kb on + strand, within MMJJ_RS03835at 713.580 kb on - strand, within MMJJ_RS03835at 713.630 kb on - strand, within MMJJ_RS03835at 713.631 kb on + strand, within MMJJ_RS03835

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas-formate glass attached
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710,991 + MMJJ_RS03820 0.19 -2.0
711,066 - +0.6
711,066 - +0.6
711,067 + MMJJ_RS03820 0.26 -1.4
711,067 + MMJJ_RS03820 0.26 -1.9
711,238 - MMJJ_RS03820 0.42 -0.4
711,241 - MMJJ_RS03820 0.42 -0.6
711,334 - MMJJ_RS03820 0.51 -1.4
711,387 - MMJJ_RS03820 0.56 +1.2
711,388 + MMJJ_RS03820 0.56 +2.4
711,388 + +0.6
711,390 - MMJJ_RS03820 0.56 -1.0
711,390 - MMJJ_RS03820 0.56 -1.2
711,391 + +0.2
711,476 + MMJJ_RS03820 0.64 -1.4
711,476 + -0.2
711,487 - MMJJ_RS03820 0.65 -0.8
711,849 - +0.1
711,854 - -0.5
711,861 + -0.5
711,864 - -1.4
711,868 - -0.5
711,868 - +0.7
711,868 - +2.4
711,868 - -4.7
711,868 - -1.7
711,868 - +0.5
711,868 - -0.1
711,868 - -0.4
711,868 - +0.0
711,868 - -0.5
711,869 + +0.2
711,869 + -1.2
711,873 - -0.1
711,894 + -1.2
711,914 + +1.1
711,926 + -0.1
711,963 - -1.6
711,965 - +0.6
711,966 + MMJJ_RS03825 0.10 +0.7
711,971 + MMJJ_RS03825 0.11 +0.9
711,978 - MMJJ_RS03825 0.12 +1.4
711,978 - MMJJ_RS03825 0.12 -0.1
711,978 - MMJJ_RS03825 0.12 +0.5
711,978 - MMJJ_RS03825 0.12 +1.1
711,997 - MMJJ_RS03825 0.14 +0.5
711,998 + MMJJ_RS03825 0.14 +0.5
711,998 + MMJJ_RS03825 0.14 +0.3
712,087 - MMJJ_RS03825 0.26 +0.8
712,087 - MMJJ_RS03825 0.26 -0.8
712,088 + MMJJ_RS03825 0.26 +0.2
712,088 + MMJJ_RS03825 0.26 -1.7
712,091 - MMJJ_RS03825 0.27 +1.2
712,091 - MMJJ_RS03825 0.27 -0.6
712,091 - MMJJ_RS03825 0.27 -0.1
712,091 - MMJJ_RS03825 0.27 -0.1
712,092 + MMJJ_RS03825 0.27 -0.3
712,092 + MMJJ_RS03825 0.27 -0.0
712,094 + MMJJ_RS03825 0.27 -1.9
712,121 - MMJJ_RS03825 0.31 -0.1
712,122 + MMJJ_RS03825 0.31 +0.7
712,151 + MMJJ_RS03825 0.35 -0.2
712,166 + MMJJ_RS03825 0.37 +0.4
712,166 + MMJJ_RS03825 0.37 +0.1
712,172 - MMJJ_RS03825 0.38 +0.8
712,173 + MMJJ_RS03825 0.38 +0.1
712,173 + MMJJ_RS03825 0.38 +0.8
712,173 + MMJJ_RS03825 0.38 +0.8
712,176 - MMJJ_RS03825 0.38 -2.9
712,180 - MMJJ_RS03825 0.39 +0.1
712,199 + MMJJ_RS03825 0.41 +0.5
712,207 - MMJJ_RS03825 0.43 +1.1
712,208 + MMJJ_RS03825 0.43 +0.2
712,208 + MMJJ_RS03825 0.43 +0.3
712,208 + MMJJ_RS03825 0.43 +0.2
712,261 - MMJJ_RS03825 0.50 +0.7
712,276 + MMJJ_RS03825 0.52 +1.6
712,311 + MMJJ_RS03825 0.57 +0.7
712,311 + MMJJ_RS03825 0.57 +0.4
712,312 - MMJJ_RS03825 0.57 -0.3
712,351 - MMJJ_RS03825 0.62 +0.3
712,352 + MMJJ_RS03825 0.62 +0.4
712,352 + MMJJ_RS03825 0.62 +0.4
712,353 - MMJJ_RS03825 0.62 -0.0
712,354 + MMJJ_RS03825 0.62 +2.4
712,367 + MMJJ_RS03825 0.64 +3.3
712,395 + MMJJ_RS03825 0.68 +2.1
712,395 + MMJJ_RS03825 0.68 +0.6
712,446 - MMJJ_RS03825 0.75 -0.4
712,464 - MMJJ_RS03825 0.77 +0.5
712,465 + MMJJ_RS03825 0.77 +0.1
712,465 + MMJJ_RS03825 0.77 -2.2
712,469 + MMJJ_RS03825 0.78 -0.2
712,518 + MMJJ_RS03825 0.84 -1.0
712,518 + MMJJ_RS03825 0.84 -1.5
712,544 + MMJJ_RS03825 0.88 -0.3
712,553 + MMJJ_RS03825 0.89 +0.6
712,567 + +0.5
712,567 + -1.4
712,576 - +0.6
712,576 - +0.1
712,577 + -1.4
712,577 + +0.2
712,579 - -0.8
712,650 + +0.5
712,658 + -0.2
712,684 - -4.2
712,699 - +0.8
712,700 + -0.4
712,700 + -1.1
712,700 + -4.6
712,700 + +0.0
712,700 + +0.8
712,701 - +1.2
712,741 - -2.7
712,745 + -1.4
712,811 - MMJJ_RS03830 0.18 -0.4
712,893 - MMJJ_RS03830 0.28 +0.3
712,919 + MMJJ_RS03830 0.31 -0.8
712,949 - MMJJ_RS03830 0.35 +0.7
712,950 + MMJJ_RS03830 0.35 +0.4
712,957 + MMJJ_RS03830 0.36 +0.2
713,006 - MMJJ_RS03830 0.42 +2.1
713,006 - MMJJ_RS03830 0.42 +1.1
713,007 + MMJJ_RS03830 0.42 +0.1
713,024 + MMJJ_RS03830 0.45 +0.7
713,038 - MMJJ_RS03830 0.46 +0.9
713,039 + MMJJ_RS03830 0.46 -4.5
713,039 + MMJJ_RS03830 0.46 -0.6
713,039 + MMJJ_RS03830 0.46 -1.0
713,043 + MMJJ_RS03830 0.47 -0.6
713,065 + MMJJ_RS03830 0.50 -0.3
713,124 + MMJJ_RS03830 0.57 +0.0
713,124 + MMJJ_RS03830 0.57 -1.0
713,124 + MMJJ_RS03830 0.57 +0.1
713,124 + MMJJ_RS03830 0.57 +0.5
713,124 + MMJJ_RS03830 0.57 +0.2
713,197 - MMJJ_RS03830 0.66 +0.3
713,198 + MMJJ_RS03830 0.66 +0.9
713,222 - MMJJ_RS03830 0.69 +0.0
713,242 - MMJJ_RS03830 0.72 -0.5
713,280 + MMJJ_RS03830 0.77 +0.3
713,299 - MMJJ_RS03830 0.79 +0.5
713,306 + MMJJ_RS03830 0.80 -0.1
713,391 + -0.4
713,446 + -0.0
713,459 - -0.2
713,460 + -1.3
713,506 + MMJJ_RS03835 0.16 +0.2
713,580 - MMJJ_RS03835 0.48 +0.5
713,630 - MMJJ_RS03835 0.69 +0.5
713,631 + MMJJ_RS03835 0.70 -0.3

Or see this region's nucleotide sequence