Experiment: McCas-formate glass attached
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03415 and MMJJ_RS03420 overlap by 8 nucleotides MMJJ_RS03420 and MMJJ_RS03425 are separated by 0 nucleotides MMJJ_RS03425 and MMJJ_RS03430 are separated by 220 nucleotides MMJJ_RS03430 and MMJJ_RS03435 are separated by 115 nucleotides
MMJJ_RS03415: MMJJ_RS03415 - hypothetical protein, at 642,654 to 643,091
_RS03415
MMJJ_RS03420: MMJJ_RS03420 - hypothetical protein, at 643,084 to 643,359
_RS03420
MMJJ_RS03425: MMJJ_RS03425 - DUF2080 family transposase-associated protein, at 643,360 to 643,485
_RS03425
MMJJ_RS03430: MMJJ_RS03430 - winged helix-turn-helix domain-containing protein, at 643,706 to 644,071
_RS03430
MMJJ_RS03435: MMJJ_RS03435 - hypothetical protein, at 644,187 to 645,512
_RS03435
Position (kb) 643
644
645 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 642.734 kb on + strand, within MMJJ_RS03415 at 642.741 kb on - strand, within MMJJ_RS03415 at 642.795 kb on + strand, within MMJJ_RS03415 at 642.821 kb on - strand, within MMJJ_RS03415 at 642.821 kb on - strand, within MMJJ_RS03415 at 642.873 kb on - strand, within MMJJ_RS03415 at 642.891 kb on - strand, within MMJJ_RS03415 at 642.899 kb on + strand, within MMJJ_RS03415 at 642.899 kb on + strand, within MMJJ_RS03415 at 642.951 kb on - strand, within MMJJ_RS03415 at 642.951 kb on - strand, within MMJJ_RS03415 at 642.951 kb on - strand, within MMJJ_RS03415 at 642.957 kb on - strand, within MMJJ_RS03415 at 642.958 kb on + strand, within MMJJ_RS03415 at 642.988 kb on - strand, within MMJJ_RS03415 at 643.065 kb on + strand at 643.071 kb on + strand at 643.071 kb on + strand at 643.108 kb on - strand at 643.116 kb on + strand, within MMJJ_RS03420 at 643.116 kb on + strand, within MMJJ_RS03420 at 643.116 kb on + strand, within MMJJ_RS03420 at 643.133 kb on - strand, within MMJJ_RS03420 at 643.134 kb on + strand, within MMJJ_RS03420 at 643.134 kb on + strand, within MMJJ_RS03420 at 643.188 kb on + strand, within MMJJ_RS03420 at 643.213 kb on - strand, within MMJJ_RS03420 at 643.214 kb on + strand, within MMJJ_RS03420 at 643.214 kb on + strand, within MMJJ_RS03420 at 643.214 kb on + strand, within MMJJ_RS03420 at 643.217 kb on - strand, within MMJJ_RS03420 at 643.217 kb on - strand, within MMJJ_RS03420 at 643.218 kb on + strand, within MMJJ_RS03420 at 643.232 kb on + strand, within MMJJ_RS03420 at 643.238 kb on - strand, within MMJJ_RS03420 at 643.239 kb on + strand, within MMJJ_RS03420 at 643.279 kb on - strand, within MMJJ_RS03420 at 643.280 kb on + strand, within MMJJ_RS03420 at 643.312 kb on - strand, within MMJJ_RS03420 at 643.313 kb on + strand, within MMJJ_RS03420 at 643.313 kb on + strand, within MMJJ_RS03420 at 643.317 kb on - strand, within MMJJ_RS03420 at 643.317 kb on - strand, within MMJJ_RS03420 at 643.317 kb on - strand, within MMJJ_RS03420 at 643.317 kb on - strand, within MMJJ_RS03420 at 643.318 kb on + strand, within MMJJ_RS03420 at 643.319 kb on - strand, within MMJJ_RS03420 at 643.320 kb on + strand, within MMJJ_RS03420 at 643.320 kb on + strand, within MMJJ_RS03420 at 643.362 kb on + strand at 643.393 kb on - strand, within MMJJ_RS03425 at 643.395 kb on - strand, within MMJJ_RS03425 at 643.404 kb on - strand, within MMJJ_RS03425 at 643.405 kb on + strand, within MMJJ_RS03425 at 643.466 kb on + strand, within MMJJ_RS03425 at 643.591 kb on - strand at 643.591 kb on - strand at 643.591 kb on - strand at 643.591 kb on - strand at 643.592 kb on + strand at 643.592 kb on + strand at 643.592 kb on + strand at 643.592 kb on + strand at 643.661 kb on - strand at 643.667 kb on + strand at 643.682 kb on - strand at 643.779 kb on + strand, within MMJJ_RS03430 at 643.835 kb on + strand at 643.845 kb on - strand, within MMJJ_RS03430 at 643.863 kb on - strand, within MMJJ_RS03430 at 643.906 kb on - strand, within MMJJ_RS03430 at 643.918 kb on - strand, within MMJJ_RS03430 at 643.954 kb on + strand, within MMJJ_RS03430 at 643.956 kb on + strand at 644.001 kb on - strand, within MMJJ_RS03430 at 644.001 kb on - strand, within MMJJ_RS03430 at 644.020 kb on - strand, within MMJJ_RS03430 at 644.020 kb on - strand, within MMJJ_RS03430 at 644.021 kb on + strand, within MMJJ_RS03430 at 644.045 kb on + strand at 644.069 kb on - strand at 644.083 kb on + strand at 644.083 kb on + strand at 644.085 kb on - strand at 644.085 kb on - strand at 644.090 kb on + strand at 644.090 kb on + strand at 644.091 kb on - strand at 644.092 kb on + strand at 644.099 kb on + strand at 644.127 kb on - strand at 644.132 kb on + strand at 644.133 kb on - strand at 644.133 kb on - strand at 644.138 kb on + strand at 644.138 kb on + strand at 644.142 kb on - strand at 644.146 kb on - strand at 644.146 kb on - strand at 644.146 kb on - strand at 644.242 kb on - strand at 644.247 kb on - strand at 644.247 kb on - strand at 644.247 kb on - strand at 644.247 kb on - strand at 644.248 kb on + strand at 644.249 kb on - strand at 644.249 kb on - strand at 644.249 kb on - strand at 644.250 kb on + strand at 644.250 kb on + strand at 644.250 kb on + strand at 644.307 kb on - strand at 644.308 kb on + strand at 644.312 kb on + strand at 644.376 kb on - strand, within MMJJ_RS03435 at 644.382 kb on + strand, within MMJJ_RS03435 at 644.400 kb on + strand, within MMJJ_RS03435 at 644.403 kb on + strand, within MMJJ_RS03435 at 644.418 kb on + strand, within MMJJ_RS03435 at 644.432 kb on + strand, within MMJJ_RS03435 at 644.463 kb on - strand, within MMJJ_RS03435 at 644.464 kb on + strand, within MMJJ_RS03435 at 644.464 kb on + strand, within MMJJ_RS03435 at 644.464 kb on + strand, within MMJJ_RS03435 at 644.480 kb on - strand, within MMJJ_RS03435 at 644.544 kb on - strand, within MMJJ_RS03435 at 644.545 kb on + strand, within MMJJ_RS03435 at 644.545 kb on + strand, within MMJJ_RS03435 at 644.545 kb on + strand, within MMJJ_RS03435 at 644.545 kb on + strand, within MMJJ_RS03435 at 644.587 kb on - strand, within MMJJ_RS03435 at 644.594 kb on - strand, within MMJJ_RS03435 at 644.625 kb on + strand, within MMJJ_RS03435 at 644.643 kb on + strand, within MMJJ_RS03435 at 644.645 kb on + strand, within MMJJ_RS03435 at 644.690 kb on + strand, within MMJJ_RS03435 at 644.707 kb on - strand, within MMJJ_RS03435 at 644.708 kb on + strand, within MMJJ_RS03435 at 644.750 kb on - strand, within MMJJ_RS03435 at 644.750 kb on - strand, within MMJJ_RS03435 at 644.754 kb on + strand, within MMJJ_RS03435 at 644.754 kb on + strand, within MMJJ_RS03435 at 644.779 kb on - strand, within MMJJ_RS03435 at 644.823 kb on - strand, within MMJJ_RS03435 at 644.824 kb on + strand, within MMJJ_RS03435 at 644.824 kb on + strand, within MMJJ_RS03435 at 644.828 kb on - strand, within MMJJ_RS03435 at 644.858 kb on - strand, within MMJJ_RS03435 at 644.858 kb on - strand, within MMJJ_RS03435 at 644.905 kb on - strand, within MMJJ_RS03435 at 644.915 kb on + strand, within MMJJ_RS03435 at 644.978 kb on - strand, within MMJJ_RS03435 at 644.978 kb on - strand, within MMJJ_RS03435 at 644.978 kb on - strand, within MMJJ_RS03435 at 644.979 kb on + strand, within MMJJ_RS03435 at 644.981 kb on - strand, within MMJJ_RS03435 at 644.982 kb on + strand, within MMJJ_RS03435 at 644.983 kb on - strand, within MMJJ_RS03435 at 644.983 kb on - strand, within MMJJ_RS03435 at 644.983 kb on - strand, within MMJJ_RS03435 at 644.984 kb on + strand, within MMJJ_RS03435 at 644.984 kb on + strand, within MMJJ_RS03435 at 644.984 kb on + strand, within MMJJ_RS03435 at 645.013 kb on - strand, within MMJJ_RS03435 at 645.033 kb on - strand, within MMJJ_RS03435 at 645.053 kb on - strand, within MMJJ_RS03435 at 645.068 kb on + strand, within MMJJ_RS03435
Per-strain Table
Position Strand Gene LocusTag Fraction McCas-formate glass attached remove 642,734 + MMJJ_RS03415 0.18 +0.9 642,741 - MMJJ_RS03415 0.20 -3.1 642,795 + MMJJ_RS03415 0.32 +0.6 642,821 - MMJJ_RS03415 0.38 -1.5 642,821 - MMJJ_RS03415 0.38 +0.4 642,873 - MMJJ_RS03415 0.50 +1.8 642,891 - MMJJ_RS03415 0.54 -0.6 642,899 + MMJJ_RS03415 0.56 -0.2 642,899 + MMJJ_RS03415 0.56 +0.2 642,951 - MMJJ_RS03415 0.68 +0.9 642,951 - MMJJ_RS03415 0.68 -0.1 642,951 - MMJJ_RS03415 0.68 -0.2 642,957 - MMJJ_RS03415 0.69 +0.6 642,958 + MMJJ_RS03415 0.69 +0.0 642,988 - MMJJ_RS03415 0.76 -0.8 643,065 + +0.8 643,071 + +0.5 643,071 + +0.3 643,108 - +0.9 643,116 + MMJJ_RS03420 0.12 +0.0 643,116 + MMJJ_RS03420 0.12 -4.9 643,116 + MMJJ_RS03420 0.12 +0.5 643,133 - MMJJ_RS03420 0.18 -2.4 643,134 + MMJJ_RS03420 0.18 -0.5 643,134 + MMJJ_RS03420 0.18 +0.6 643,188 + MMJJ_RS03420 0.38 +1.6 643,213 - MMJJ_RS03420 0.47 +0.5 643,214 + MMJJ_RS03420 0.47 -5.1 643,214 + MMJJ_RS03420 0.47 -0.6 643,214 + MMJJ_RS03420 0.47 +0.5 643,217 - MMJJ_RS03420 0.48 -0.7 643,217 - MMJJ_RS03420 0.48 +0.4 643,218 + MMJJ_RS03420 0.49 +0.6 643,232 + MMJJ_RS03420 0.54 -1.8 643,238 - MMJJ_RS03420 0.56 -0.1 643,239 + MMJJ_RS03420 0.56 +0.5 643,279 - MMJJ_RS03420 0.71 -1.9 643,280 + MMJJ_RS03420 0.71 +0.1 643,312 - MMJJ_RS03420 0.83 +0.4 643,313 + MMJJ_RS03420 0.83 -0.6 643,313 + MMJJ_RS03420 0.83 +1.1 643,317 - MMJJ_RS03420 0.84 +0.4 643,317 - MMJJ_RS03420 0.84 +0.8 643,317 - MMJJ_RS03420 0.84 +0.4 643,317 - MMJJ_RS03420 0.84 +1.2 643,318 + MMJJ_RS03420 0.85 -0.3 643,319 - MMJJ_RS03420 0.85 -0.6 643,320 + MMJJ_RS03420 0.86 -0.7 643,320 + MMJJ_RS03420 0.86 +0.8 643,362 + +0.6 643,393 - MMJJ_RS03425 0.26 +0.4 643,395 - MMJJ_RS03425 0.28 +0.2 643,404 - MMJJ_RS03425 0.35 +0.3 643,405 + MMJJ_RS03425 0.36 -3.2 643,466 + MMJJ_RS03425 0.84 +0.5 643,591 - +0.7 643,591 - -0.4 643,591 - +0.2 643,591 - -0.2 643,592 + +0.1 643,592 + -0.5 643,592 + +0.1 643,592 + -0.8 643,661 - -3.5 643,667 + +1.2 643,682 - -2.1 643,779 + MMJJ_RS03430 0.20 -1.3 643,835 + +2.6 643,845 - MMJJ_RS03430 0.38 -0.8 643,863 - MMJJ_RS03430 0.43 -0.3 643,906 - MMJJ_RS03430 0.55 -1.0 643,918 - MMJJ_RS03430 0.58 +1.8 643,954 + MMJJ_RS03430 0.68 -1.3 643,956 + -0.1 644,001 - MMJJ_RS03430 0.81 +1.1 644,001 - MMJJ_RS03430 0.81 +0.1 644,020 - MMJJ_RS03430 0.86 +0.0 644,020 - MMJJ_RS03430 0.86 +0.7 644,021 + MMJJ_RS03430 0.86 +0.4 644,045 + -1.3 644,069 - -0.5 644,083 + -5.8 644,083 + -0.5 644,085 - +0.4 644,085 - +0.3 644,090 + -0.5 644,090 + -0.9 644,091 - -0.5 644,092 + +0.5 644,099 + +0.7 644,127 - +0.4 644,132 + +0.8 644,133 - -3.0 644,133 - -1.1 644,138 + -2.9 644,138 + +0.8 644,142 - +0.8 644,146 - +0.9 644,146 - -0.5 644,146 - +0.3 644,242 - +0.8 644,247 - +1.2 644,247 - +0.2 644,247 - -1.7 644,247 - -2.7 644,248 + +0.2 644,249 - +0.7 644,249 - +0.8 644,249 - +0.7 644,250 + -0.5 644,250 + +0.0 644,250 + -4.6 644,307 - +0.2 644,308 + -0.3 644,312 + -0.6 644,376 - MMJJ_RS03435 0.14 -0.1 644,382 + MMJJ_RS03435 0.15 +0.6 644,400 + MMJJ_RS03435 0.16 -0.8 644,403 + MMJJ_RS03435 0.16 +2.6 644,418 + MMJJ_RS03435 0.17 -1.8 644,432 + MMJJ_RS03435 0.18 -1.4 644,463 - MMJJ_RS03435 0.21 +0.1 644,464 + MMJJ_RS03435 0.21 +0.4 644,464 + MMJJ_RS03435 0.21 -0.2 644,464 + MMJJ_RS03435 0.21 +0.6 644,480 - MMJJ_RS03435 0.22 -0.7 644,544 - MMJJ_RS03435 0.27 -0.3 644,545 + MMJJ_RS03435 0.27 +0.2 644,545 + MMJJ_RS03435 0.27 +1.6 644,545 + MMJJ_RS03435 0.27 +0.8 644,545 + MMJJ_RS03435 0.27 -0.2 644,587 - MMJJ_RS03435 0.30 +0.4 644,594 - MMJJ_RS03435 0.31 +0.5 644,625 + MMJJ_RS03435 0.33 -0.1 644,643 + MMJJ_RS03435 0.34 -0.8 644,645 + MMJJ_RS03435 0.35 -0.1 644,690 + MMJJ_RS03435 0.38 +0.9 644,707 - MMJJ_RS03435 0.39 +0.3 644,708 + MMJJ_RS03435 0.39 +0.4 644,750 - MMJJ_RS03435 0.42 -0.2 644,750 - MMJJ_RS03435 0.42 -1.6 644,754 + MMJJ_RS03435 0.43 +0.1 644,754 + MMJJ_RS03435 0.43 +0.1 644,779 - MMJJ_RS03435 0.45 +0.1 644,823 - MMJJ_RS03435 0.48 -0.2 644,824 + MMJJ_RS03435 0.48 +0.2 644,824 + MMJJ_RS03435 0.48 +0.9 644,828 - MMJJ_RS03435 0.48 -1.8 644,858 - MMJJ_RS03435 0.51 +0.5 644,858 - MMJJ_RS03435 0.51 -3.4 644,905 - MMJJ_RS03435 0.54 +1.7 644,915 + MMJJ_RS03435 0.55 -0.5 644,978 - MMJJ_RS03435 0.60 -0.7 644,978 - MMJJ_RS03435 0.60 +0.1 644,978 - MMJJ_RS03435 0.60 -0.2 644,979 + MMJJ_RS03435 0.60 -0.3 644,981 - MMJJ_RS03435 0.60 +0.5 644,982 + MMJJ_RS03435 0.60 +0.6 644,983 - MMJJ_RS03435 0.60 +0.5 644,983 - MMJJ_RS03435 0.60 +0.6 644,983 - MMJJ_RS03435 0.60 +0.4 644,984 + MMJJ_RS03435 0.60 +0.3 644,984 + MMJJ_RS03435 0.60 +0.5 644,984 + MMJJ_RS03435 0.60 +1.2 645,013 - MMJJ_RS03435 0.62 +0.5 645,033 - MMJJ_RS03435 0.64 +0.3 645,053 - MMJJ_RS03435 0.65 -0.4 645,068 + MMJJ_RS03435 0.66 +0.8
Or see this region's nucleotide sequence