Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS03320

Experiment: McCas-formate glass attached

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMJJ_RS03315 and MMJJ_RS03320 overlap by 17 nucleotidesMMJJ_RS03320 and MMJJ_RS03325 are separated by 41 nucleotides MMJJ_RS03315: MMJJ_RS03315 - hypothetical protein, at 629,765 to 631,825 _RS03315 MMJJ_RS03320: MMJJ_RS03320 - hypothetical protein, at 631,809 to 631,982 _RS03320 MMJJ_RS03325: MMJJ_RS03325 - hypothetical protein, at 632,024 to 634,282 _RS03325 Position (kb) 631 632Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 630.886 kb on - strand, within MMJJ_RS03315at 630.886 kb on - strandat 630.886 kb on - strand, within MMJJ_RS03315at 630.886 kb on - strand, within MMJJ_RS03315at 630.887 kb on + strand, within MMJJ_RS03315at 630.887 kb on + strand, within MMJJ_RS03315at 630.892 kb on - strand, within MMJJ_RS03315at 630.903 kb on - strand, within MMJJ_RS03315at 630.903 kb on - strand, within MMJJ_RS03315at 630.904 kb on + strand, within MMJJ_RS03315at 630.955 kb on - strand, within MMJJ_RS03315at 630.965 kb on + strand, within MMJJ_RS03315at 630.965 kb on + strand, within MMJJ_RS03315at 630.985 kb on - strand, within MMJJ_RS03315at 631.059 kb on - strand, within MMJJ_RS03315at 631.061 kb on - strand, within MMJJ_RS03315at 631.061 kb on - strand, within MMJJ_RS03315at 631.100 kb on - strand, within MMJJ_RS03315at 631.173 kb on + strand, within MMJJ_RS03315at 631.189 kb on - strand, within MMJJ_RS03315at 631.189 kb on - strand, within MMJJ_RS03315at 631.211 kb on + strand, within MMJJ_RS03315at 631.211 kb on + strand, within MMJJ_RS03315at 631.233 kb on - strand, within MMJJ_RS03315at 631.233 kb on - strand, within MMJJ_RS03315at 631.234 kb on + strand, within MMJJ_RS03315at 631.234 kb on + strand, within MMJJ_RS03315at 631.242 kb on + strand, within MMJJ_RS03315at 631.261 kb on - strand, within MMJJ_RS03315at 631.261 kb on - strand, within MMJJ_RS03315at 631.262 kb on + strandat 631.262 kb on + strand, within MMJJ_RS03315at 631.262 kb on + strand, within MMJJ_RS03315at 631.267 kb on - strand, within MMJJ_RS03315at 631.268 kb on + strand, within MMJJ_RS03315at 631.275 kb on + strand, within MMJJ_RS03315at 631.275 kb on + strand, within MMJJ_RS03315at 631.284 kb on + strand, within MMJJ_RS03315at 631.291 kb on - strand, within MMJJ_RS03315at 631.307 kb on - strand, within MMJJ_RS03315at 631.307 kb on - strand, within MMJJ_RS03315at 631.308 kb on + strand, within MMJJ_RS03315at 631.308 kb on + strand, within MMJJ_RS03315at 631.312 kb on - strand, within MMJJ_RS03315at 631.312 kb on - strand, within MMJJ_RS03315at 631.312 kb on - strand, within MMJJ_RS03315at 631.312 kb on - strand, within MMJJ_RS03315at 631.313 kb on + strand, within MMJJ_RS03315at 631.313 kb on + strand, within MMJJ_RS03315at 631.313 kb on + strand, within MMJJ_RS03315at 631.313 kb on + strand, within MMJJ_RS03315at 631.313 kb on + strand, within MMJJ_RS03315at 631.314 kb on - strand, within MMJJ_RS03315at 631.361 kb on - strand, within MMJJ_RS03315at 631.362 kb on + strand, within MMJJ_RS03315at 631.362 kb on + strand, within MMJJ_RS03315at 631.382 kb on - strand, within MMJJ_RS03315at 631.413 kb on + strand, within MMJJ_RS03315at 631.413 kb on + strand, within MMJJ_RS03315at 631.418 kb on + strand, within MMJJ_RS03315at 631.433 kb on - strand, within MMJJ_RS03315at 631.434 kb on + strand, within MMJJ_RS03315at 631.477 kb on + strand, within MMJJ_RS03315at 631.487 kb on + strand, within MMJJ_RS03315at 631.506 kb on + strand, within MMJJ_RS03315at 631.615 kb on - strand, within MMJJ_RS03315at 631.642 kb on - strandat 631.643 kb on + strandat 631.689 kb on + strandat 631.690 kb on - strandat 631.690 kb on - strandat 631.690 kb on - strandat 631.700 kb on - strandat 631.701 kb on + strandat 631.733 kb on - strandat 631.734 kb on + strandat 631.734 kb on + strandat 631.810 kb on - strandat 631.888 kb on + strand, within MMJJ_RS03320at 631.907 kb on - strand, within MMJJ_RS03320at 631.940 kb on + strand, within MMJJ_RS03320at 631.952 kb on - strand, within MMJJ_RS03320at 631.953 kb on + strand, within MMJJ_RS03320at 631.953 kb on + strand, within MMJJ_RS03320at 631.953 kb on + strand, within MMJJ_RS03320at 631.953 kb on + strand, within MMJJ_RS03320at 631.957 kb on + strand, within MMJJ_RS03320at 631.957 kb on + strand, within MMJJ_RS03320at 631.957 kb on + strand, within MMJJ_RS03320at 631.986 kb on - strandat 632.020 kb on + strandat 632.048 kb on - strandat 632.049 kb on + strandat 632.075 kb on - strandat 632.075 kb on - strandat 632.076 kb on + strandat 632.082 kb on + strandat 632.085 kb on + strandat 632.097 kb on + strandat 632.097 kb on + strandat 632.097 kb on + strandat 632.111 kb on + strandat 632.128 kb on - strandat 632.213 kb on - strandat 632.214 kb on + strandat 632.258 kb on + strandat 632.289 kb on - strand, within MMJJ_RS03325at 632.307 kb on + strand, within MMJJ_RS03325at 632.310 kb on - strand, within MMJJ_RS03325at 632.310 kb on - strand, within MMJJ_RS03325at 632.310 kb on - strand, within MMJJ_RS03325at 632.310 kb on - strand, within MMJJ_RS03325at 632.345 kb on - strand, within MMJJ_RS03325at 632.379 kb on + strand, within MMJJ_RS03325at 632.408 kb on - strand, within MMJJ_RS03325at 632.408 kb on - strand, within MMJJ_RS03325at 632.434 kb on - strand, within MMJJ_RS03325at 632.434 kb on - strand, within MMJJ_RS03325at 632.434 kb on - strand, within MMJJ_RS03325at 632.436 kb on - strand, within MMJJ_RS03325at 632.437 kb on + strand, within MMJJ_RS03325at 632.437 kb on + strand, within MMJJ_RS03325at 632.437 kb on + strand, within MMJJ_RS03325at 632.437 kb on + strand, within MMJJ_RS03325at 632.437 kb on + strand, within MMJJ_RS03325at 632.437 kb on + strand, within MMJJ_RS03325at 632.440 kb on + strand, within MMJJ_RS03325at 632.440 kb on + strand, within MMJJ_RS03325at 632.440 kb on + strand, within MMJJ_RS03325at 632.452 kb on - strand, within MMJJ_RS03325at 632.452 kb on - strand, within MMJJ_RS03325at 632.453 kb on + strand, within MMJJ_RS03325at 632.468 kb on + strand, within MMJJ_RS03325at 632.471 kb on - strand, within MMJJ_RS03325at 632.538 kb on + strand, within MMJJ_RS03325at 632.595 kb on - strand, within MMJJ_RS03325at 632.781 kb on + strand, within MMJJ_RS03325at 632.821 kb on - strand, within MMJJ_RS03325at 632.821 kb on - strand, within MMJJ_RS03325at 632.822 kb on + strand, within MMJJ_RS03325at 632.829 kb on + strand, within MMJJ_RS03325at 632.832 kb on - strand, within MMJJ_RS03325at 632.832 kb on - strand, within MMJJ_RS03325at 632.832 kb on - strand, within MMJJ_RS03325at 632.833 kb on + strand, within MMJJ_RS03325at 632.914 kb on - strand, within MMJJ_RS03325at 632.917 kb on - strand, within MMJJ_RS03325at 632.917 kb on - strand, within MMJJ_RS03325at 632.918 kb on + strand, within MMJJ_RS03325at 632.918 kb on + strand, within MMJJ_RS03325at 632.920 kb on - strand, within MMJJ_RS03325at 632.920 kb on - strand, within MMJJ_RS03325at 632.936 kb on - strand, within MMJJ_RS03325at 632.936 kb on - strand, within MMJJ_RS03325at 632.938 kb on - strand, within MMJJ_RS03325at 632.938 kb on - strand, within MMJJ_RS03325at 632.949 kb on + strand, within MMJJ_RS03325at 632.968 kb on + strand, within MMJJ_RS03325at 632.972 kb on - strand, within MMJJ_RS03325at 632.981 kb on + strand, within MMJJ_RS03325

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction McCas-formate glass attached
remove
630,886 - MMJJ_RS03315 0.54 +1.1
630,886 - +3.6
630,886 - MMJJ_RS03315 0.54 +1.7
630,886 - MMJJ_RS03315 0.54 -0.8
630,887 + MMJJ_RS03315 0.54 +0.5
630,887 + MMJJ_RS03315 0.54 +0.2
630,892 - MMJJ_RS03315 0.55 +1.2
630,903 - MMJJ_RS03315 0.55 +0.3
630,903 - MMJJ_RS03315 0.55 -2.7
630,904 + MMJJ_RS03315 0.55 -0.4
630,955 - MMJJ_RS03315 0.58 +0.1
630,965 + MMJJ_RS03315 0.58 +0.6
630,965 + MMJJ_RS03315 0.58 +0.0
630,985 - MMJJ_RS03315 0.59 -0.2
631,059 - MMJJ_RS03315 0.63 -0.8
631,061 - MMJJ_RS03315 0.63 +0.3
631,061 - MMJJ_RS03315 0.63 +0.5
631,100 - MMJJ_RS03315 0.65 +0.1
631,173 + MMJJ_RS03315 0.68 +0.2
631,189 - MMJJ_RS03315 0.69 +0.2
631,189 - MMJJ_RS03315 0.69 +0.1
631,211 + MMJJ_RS03315 0.70 -2.4
631,211 + MMJJ_RS03315 0.70 +0.3
631,233 - MMJJ_RS03315 0.71 -0.2
631,233 - MMJJ_RS03315 0.71 -5.4
631,234 + MMJJ_RS03315 0.71 -0.2
631,234 + MMJJ_RS03315 0.71 -0.8
631,242 + MMJJ_RS03315 0.72 -1.3
631,261 - MMJJ_RS03315 0.73 +1.6
631,261 - MMJJ_RS03315 0.73 +1.0
631,262 + +0.2
631,262 + MMJJ_RS03315 0.73 -0.2
631,262 + MMJJ_RS03315 0.73 -0.1
631,267 - MMJJ_RS03315 0.73 +1.2
631,268 + MMJJ_RS03315 0.73 +0.7
631,275 + MMJJ_RS03315 0.73 -1.3
631,275 + MMJJ_RS03315 0.73 -4.5
631,284 + MMJJ_RS03315 0.74 +0.5
631,291 - MMJJ_RS03315 0.74 +0.2
631,307 - MMJJ_RS03315 0.75 +0.9
631,307 - MMJJ_RS03315 0.75 -0.1
631,308 + MMJJ_RS03315 0.75 +0.7
631,308 + MMJJ_RS03315 0.75 -0.4
631,312 - MMJJ_RS03315 0.75 -0.2
631,312 - MMJJ_RS03315 0.75 -0.6
631,312 - MMJJ_RS03315 0.75 +0.1
631,312 - MMJJ_RS03315 0.75 +0.5
631,313 + MMJJ_RS03315 0.75 -0.1
631,313 + MMJJ_RS03315 0.75 -0.3
631,313 + MMJJ_RS03315 0.75 -0.9
631,313 + MMJJ_RS03315 0.75 +1.3
631,313 + MMJJ_RS03315 0.75 +0.5
631,314 - MMJJ_RS03315 0.75 +0.8
631,361 - MMJJ_RS03315 0.77 +0.3
631,362 + MMJJ_RS03315 0.77 -0.2
631,362 + MMJJ_RS03315 0.77 +0.7
631,382 - MMJJ_RS03315 0.78 +0.4
631,413 + MMJJ_RS03315 0.80 +0.1
631,413 + MMJJ_RS03315 0.80 -1.0
631,418 + MMJJ_RS03315 0.80 -0.2
631,433 - MMJJ_RS03315 0.81 +0.2
631,434 + MMJJ_RS03315 0.81 +0.9
631,477 + MMJJ_RS03315 0.83 +1.0
631,487 + MMJJ_RS03315 0.84 +0.8
631,506 + MMJJ_RS03315 0.84 -0.6
631,615 - MMJJ_RS03315 0.90 -2.0
631,642 - -0.8
631,643 + -1.2
631,689 + -1.1
631,690 - -0.2
631,690 - -0.6
631,690 - -0.9
631,700 - -1.8
631,701 + -0.1
631,733 - -3.0
631,734 + +0.1
631,734 + -1.8
631,810 - -0.3
631,888 + MMJJ_RS03320 0.45 -0.4
631,907 - MMJJ_RS03320 0.56 +0.3
631,940 + MMJJ_RS03320 0.75 +0.9
631,952 - MMJJ_RS03320 0.82 -0.2
631,953 + MMJJ_RS03320 0.83 +0.2
631,953 + MMJJ_RS03320 0.83 +0.9
631,953 + MMJJ_RS03320 0.83 -0.6
631,953 + MMJJ_RS03320 0.83 +1.0
631,957 + MMJJ_RS03320 0.85 -0.1
631,957 + MMJJ_RS03320 0.85 -0.3
631,957 + MMJJ_RS03320 0.85 -0.2
631,986 - +0.3
632,020 + -0.3
632,048 - +0.5
632,049 + +0.2
632,075 - -2.1
632,075 - +0.1
632,076 + +0.0
632,082 + +0.1
632,085 + -1.0
632,097 + -0.2
632,097 + +2.3
632,097 + +0.8
632,111 + +0.5
632,128 - +0.6
632,213 - +0.9
632,214 + -1.0
632,258 + -1.6
632,289 - MMJJ_RS03325 0.12 -3.0
632,307 + MMJJ_RS03325 0.13 +0.5
632,310 - MMJJ_RS03325 0.13 -0.3
632,310 - MMJJ_RS03325 0.13 -0.6
632,310 - MMJJ_RS03325 0.13 -0.0
632,310 - MMJJ_RS03325 0.13 +0.5
632,345 - MMJJ_RS03325 0.14 -0.0
632,379 + MMJJ_RS03325 0.16 +0.3
632,408 - MMJJ_RS03325 0.17 -1.9
632,408 - MMJJ_RS03325 0.17 -0.2
632,434 - MMJJ_RS03325 0.18 -0.6
632,434 - MMJJ_RS03325 0.18 -0.2
632,434 - MMJJ_RS03325 0.18 +1.3
632,436 - MMJJ_RS03325 0.18 -0.4
632,437 + MMJJ_RS03325 0.18 -0.0
632,437 + MMJJ_RS03325 0.18 -0.6
632,437 + MMJJ_RS03325 0.18 -1.0
632,437 + MMJJ_RS03325 0.18 -1.1
632,437 + MMJJ_RS03325 0.18 -1.0
632,437 + MMJJ_RS03325 0.18 -0.4
632,440 + MMJJ_RS03325 0.18 +0.1
632,440 + MMJJ_RS03325 0.18 +0.2
632,440 + MMJJ_RS03325 0.18 +0.5
632,452 - MMJJ_RS03325 0.19 -0.7
632,452 - MMJJ_RS03325 0.19 +0.2
632,453 + MMJJ_RS03325 0.19 +0.5
632,468 + MMJJ_RS03325 0.20 +0.0
632,471 - MMJJ_RS03325 0.20 +0.8
632,538 + MMJJ_RS03325 0.23 +1.2
632,595 - MMJJ_RS03325 0.25 +0.0
632,781 + MMJJ_RS03325 0.34 -0.0
632,821 - MMJJ_RS03325 0.35 +0.2
632,821 - MMJJ_RS03325 0.35 +0.1
632,822 + MMJJ_RS03325 0.35 +0.6
632,829 + MMJJ_RS03325 0.36 -1.4
632,832 - MMJJ_RS03325 0.36 +0.4
632,832 - MMJJ_RS03325 0.36 +0.0
632,832 - MMJJ_RS03325 0.36 +0.1
632,833 + MMJJ_RS03325 0.36 -1.0
632,914 - MMJJ_RS03325 0.39 -0.2
632,917 - MMJJ_RS03325 0.40 +0.7
632,917 - MMJJ_RS03325 0.40 -0.9
632,918 + MMJJ_RS03325 0.40 -0.1
632,918 + MMJJ_RS03325 0.40 +0.7
632,920 - MMJJ_RS03325 0.40 -1.9
632,920 - MMJJ_RS03325 0.40 -0.4
632,936 - MMJJ_RS03325 0.40 -0.3
632,936 - MMJJ_RS03325 0.40 +0.4
632,938 - MMJJ_RS03325 0.40 +0.6
632,938 - MMJJ_RS03325 0.40 -0.1
632,949 + MMJJ_RS03325 0.41 -0.1
632,968 + MMJJ_RS03325 0.42 -0.9
632,972 - MMJJ_RS03325 0.42 +1.2
632,981 + MMJJ_RS03325 0.42 +1.4

Or see this region's nucleotide sequence