Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS02890

Experiment: McCas-formate glass attached

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS02875 and MMJJ_RS02880 are separated by 42 nucleotidesMMJJ_RS02880 and MMJJ_RS02885 are separated by 178 nucleotidesMMJJ_RS02885 and MMJJ_RS02890 are separated by 9 nucleotidesMMJJ_RS02890 and MMJJ_RS02895 overlap by 4 nucleotidesMMJJ_RS02895 and MMJJ_RS02900 are separated by 156 nucleotides MMJJ_RS02875: MMJJ_RS02875 - site-2 protease family protein, at 541,995 to 543,008 _RS02875 MMJJ_RS02880: MMJJ_RS02880 - hypothetical protein, at 543,051 to 543,323 _RS02880 MMJJ_RS02885: MMJJ_RS02885 - NifB/NifX family molybdenum-iron cluster-binding protein, at 543,502 to 543,861 _RS02885 MMJJ_RS02890: MMJJ_RS02890 - ATP-binding protein, at 543,871 to 544,728 _RS02890 MMJJ_RS02895: MMJJ_RS02895 - ATP-binding protein, at 544,725 to 545,570 _RS02895 MMJJ_RS02900: MMJJ_RS02900 - hypothetical protein, at 545,727 to 546,011 _RS02900 Position (kb) 543 544 545Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 542.876 kb on + strand, within MMJJ_RS02875at 542.885 kb on + strand, within MMJJ_RS02875at 542.904 kb on + strand, within MMJJ_RS02875at 542.921 kb on + strandat 542.948 kb on + strandat 542.963 kb on - strandat 542.963 kb on - strandat 542.968 kb on - strandat 542.968 kb on - strandat 542.968 kb on - strandat 542.992 kb on - strandat 543.025 kb on + strandat 543.029 kb on - strandat 543.029 kb on - strandat 543.030 kb on + strandat 543.091 kb on - strand, within MMJJ_RS02880at 543.091 kb on - strand, within MMJJ_RS02880at 543.096 kb on + strand, within MMJJ_RS02880at 543.116 kb on - strand, within MMJJ_RS02880at 543.116 kb on - strand, within MMJJ_RS02880at 543.121 kb on - strand, within MMJJ_RS02880at 543.121 kb on - strand, within MMJJ_RS02880at 543.124 kb on - strand, within MMJJ_RS02880at 543.132 kb on - strand, within MMJJ_RS02880at 543.132 kb on - strand, within MMJJ_RS02880at 543.161 kb on - strand, within MMJJ_RS02880at 543.161 kb on - strand, within MMJJ_RS02880at 543.162 kb on + strand, within MMJJ_RS02880at 543.162 kb on + strand, within MMJJ_RS02880at 543.169 kb on - strand, within MMJJ_RS02880at 543.170 kb on + strand, within MMJJ_RS02880at 543.172 kb on - strand, within MMJJ_RS02880at 543.197 kb on + strand, within MMJJ_RS02880at 543.199 kb on - strand, within MMJJ_RS02880at 543.212 kb on + strand, within MMJJ_RS02880at 543.212 kb on + strand, within MMJJ_RS02880at 543.242 kb on - strand, within MMJJ_RS02880at 543.242 kb on - strand, within MMJJ_RS02880at 543.250 kb on + strand, within MMJJ_RS02880at 543.256 kb on - strand, within MMJJ_RS02880at 543.256 kb on - strand, within MMJJ_RS02880at 543.259 kb on - strand, within MMJJ_RS02880at 543.259 kb on - strand, within MMJJ_RS02880at 543.260 kb on + strand, within MMJJ_RS02880at 543.266 kb on + strand, within MMJJ_RS02880at 543.266 kb on + strand, within MMJJ_RS02880at 543.299 kb on - strandat 543.305 kb on + strandat 543.311 kb on + strandat 543.311 kb on + strandat 543.325 kb on - strandat 543.363 kb on - strandat 543.366 kb on + strandat 543.373 kb on - strandat 543.403 kb on + strandat 543.409 kb on + strandat 543.449 kb on + strandat 543.462 kb on - strandat 543.462 kb on - strandat 543.531 kb on - strandat 543.532 kb on + strandat 543.582 kb on + strand, within MMJJ_RS02885at 543.625 kb on + strand, within MMJJ_RS02885at 543.655 kb on + strand, within MMJJ_RS02885at 543.695 kb on - strand, within MMJJ_RS02885at 543.695 kb on - strand, within MMJJ_RS02885at 543.696 kb on + strand, within MMJJ_RS02885at 543.750 kb on - strand, within MMJJ_RS02885at 543.753 kb on - strand, within MMJJ_RS02885at 543.760 kb on - strand, within MMJJ_RS02885at 543.855 kb on - strandat 543.855 kb on - strandat 543.855 kb on - strandat 543.856 kb on + strandat 543.856 kb on + strandat 543.856 kb on + strandat 543.920 kb on - strandat 544.077 kb on + strand, within MMJJ_RS02890at 544.080 kb on - strand, within MMJJ_RS02890at 544.101 kb on - strand, within MMJJ_RS02890at 544.106 kb on - strand, within MMJJ_RS02890at 544.107 kb on + strand, within MMJJ_RS02890at 544.107 kb on + strand, within MMJJ_RS02890at 544.111 kb on + strand, within MMJJ_RS02890at 544.111 kb on + strand, within MMJJ_RS02890at 544.122 kb on - strand, within MMJJ_RS02890at 544.241 kb on - strand, within MMJJ_RS02890at 544.300 kb on + strand, within MMJJ_RS02890at 544.300 kb on + strand, within MMJJ_RS02890at 544.357 kb on + strand, within MMJJ_RS02890at 544.364 kb on - strand, within MMJJ_RS02890at 544.365 kb on + strand, within MMJJ_RS02890at 544.368 kb on - strand, within MMJJ_RS02890at 544.369 kb on + strand, within MMJJ_RS02890at 544.371 kb on + strand, within MMJJ_RS02890at 544.398 kb on - strand, within MMJJ_RS02890at 544.398 kb on - strand, within MMJJ_RS02890at 544.398 kb on - strand, within MMJJ_RS02890at 544.399 kb on + strand, within MMJJ_RS02890at 544.399 kb on + strand, within MMJJ_RS02890at 544.399 kb on + strand, within MMJJ_RS02890at 544.403 kb on - strand, within MMJJ_RS02890at 544.404 kb on + strand, within MMJJ_RS02890at 544.429 kb on - strand, within MMJJ_RS02890at 544.502 kb on + strand, within MMJJ_RS02890at 544.502 kb on + strand, within MMJJ_RS02890at 544.505 kb on - strand, within MMJJ_RS02890at 544.510 kb on + strand, within MMJJ_RS02890at 544.533 kb on - strand, within MMJJ_RS02890at 544.534 kb on + strand, within MMJJ_RS02890at 544.620 kb on - strand, within MMJJ_RS02890at 544.620 kb on - strand, within MMJJ_RS02890at 544.621 kb on + strand, within MMJJ_RS02890at 544.630 kb on + strand, within MMJJ_RS02890at 544.692 kb on - strandat 544.722 kb on + strandat 544.725 kb on + strandat 544.745 kb on + strandat 544.805 kb on - strandat 544.846 kb on - strand, within MMJJ_RS02895at 544.853 kb on + strand, within MMJJ_RS02895at 544.853 kb on + strand, within MMJJ_RS02895at 544.881 kb on + strand, within MMJJ_RS02895at 544.887 kb on - strand, within MMJJ_RS02895at 544.888 kb on + strand, within MMJJ_RS02895at 544.890 kb on + strand, within MMJJ_RS02895at 544.890 kb on + strand, within MMJJ_RS02895at 544.931 kb on - strand, within MMJJ_RS02895at 544.932 kb on + strand, within MMJJ_RS02895at 544.956 kb on + strand, within MMJJ_RS02895at 544.988 kb on + strand, within MMJJ_RS02895at 545.107 kb on - strand, within MMJJ_RS02895at 545.156 kb on + strand, within MMJJ_RS02895at 545.207 kb on + strand, within MMJJ_RS02895at 545.227 kb on - strand, within MMJJ_RS02895at 545.227 kb on - strand, within MMJJ_RS02895at 545.239 kb on - strand, within MMJJ_RS02895at 545.240 kb on + strand, within MMJJ_RS02895at 545.252 kb on - strand, within MMJJ_RS02895at 545.273 kb on + strand, within MMJJ_RS02895at 545.291 kb on - strand, within MMJJ_RS02895at 545.291 kb on - strand, within MMJJ_RS02895at 545.291 kb on - strand, within MMJJ_RS02895at 545.292 kb on + strand, within MMJJ_RS02895at 545.356 kb on + strand, within MMJJ_RS02895at 545.357 kb on - strand, within MMJJ_RS02895at 545.358 kb on + strand, within MMJJ_RS02895at 545.358 kb on + strand, within MMJJ_RS02895at 545.359 kb on - strandat 545.359 kb on - strand, within MMJJ_RS02895at 545.359 kb on - strand, within MMJJ_RS02895at 545.359 kb on - strand, within MMJJ_RS02895at 545.359 kb on - strand, within MMJJ_RS02895at 545.360 kb on + strand, within MMJJ_RS02895at 545.363 kb on + strand, within MMJJ_RS02895at 545.370 kb on + strand, within MMJJ_RS02895at 545.381 kb on - strand, within MMJJ_RS02895at 545.438 kb on + strand, within MMJJ_RS02895at 545.460 kb on + strand, within MMJJ_RS02895at 545.462 kb on - strand, within MMJJ_RS02895at 545.468 kb on + strand, within MMJJ_RS02895at 545.471 kb on - strand, within MMJJ_RS02895at 545.472 kb on + strand, within MMJJ_RS02895at 545.472 kb on + strand, within MMJJ_RS02895at 545.501 kb on + strandat 545.531 kb on - strandat 545.568 kb on - strandat 545.588 kb on - strandat 545.640 kb on + strandat 545.641 kb on - strandat 545.644 kb on + strandat 545.691 kb on - strandat 545.697 kb on + strandat 545.702 kb on - strandat 545.702 kb on - strandat 545.702 kb on - strandat 545.702 kb on - strandat 545.702 kb on - strandat 545.702 kb on - strandat 545.703 kb on + strandat 545.703 kb on + strandat 545.703 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas-formate glass attached
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542,876 + MMJJ_RS02875 0.87 +0.1
542,885 + MMJJ_RS02875 0.88 +1.1
542,904 + MMJJ_RS02875 0.90 +0.3
542,921 + +0.4
542,948 + +0.2
542,963 - -0.2
542,963 - -4.1
542,968 - +0.6
542,968 - +0.2
542,968 - +1.0
542,992 - -1.0
543,025 + -0.8
543,029 - +0.3
543,029 - +1.1
543,030 + +0.1
543,091 - MMJJ_RS02880 0.15 +0.2
543,091 - MMJJ_RS02880 0.15 +0.0
543,096 + MMJJ_RS02880 0.16 +0.4
543,116 - MMJJ_RS02880 0.24 -3.0
543,116 - MMJJ_RS02880 0.24 -1.1
543,121 - MMJJ_RS02880 0.26 -0.6
543,121 - MMJJ_RS02880 0.26 -0.1
543,124 - MMJJ_RS02880 0.27 -0.2
543,132 - MMJJ_RS02880 0.30 -0.3
543,132 - MMJJ_RS02880 0.30 -1.6
543,161 - MMJJ_RS02880 0.40 -0.6
543,161 - MMJJ_RS02880 0.40 +1.6
543,162 + MMJJ_RS02880 0.41 -0.2
543,162 + MMJJ_RS02880 0.41 -1.9
543,169 - MMJJ_RS02880 0.43 -0.3
543,170 + MMJJ_RS02880 0.44 +0.0
543,172 - MMJJ_RS02880 0.44 -2.1
543,197 + MMJJ_RS02880 0.53 -0.4
543,199 - MMJJ_RS02880 0.54 -0.2
543,212 + MMJJ_RS02880 0.59 -0.2
543,212 + MMJJ_RS02880 0.59 +0.3
543,242 - MMJJ_RS02880 0.70 -0.4
543,242 - MMJJ_RS02880 0.70 +0.5
543,250 + MMJJ_RS02880 0.73 +0.7
543,256 - MMJJ_RS02880 0.75 +0.9
543,256 - MMJJ_RS02880 0.75 -0.3
543,259 - MMJJ_RS02880 0.76 +0.7
543,259 - MMJJ_RS02880 0.76 +0.4
543,260 + MMJJ_RS02880 0.77 -1.5
543,266 + MMJJ_RS02880 0.79 -1.6
543,266 + MMJJ_RS02880 0.79 -1.0
543,299 - +0.4
543,305 + +0.4
543,311 + +0.2
543,311 + +0.2
543,325 - +0.3
543,363 - -1.0
543,366 + -0.9
543,373 - -0.1
543,403 + +0.7
543,409 + -3.6
543,449 + +0.4
543,462 - -0.4
543,462 - +0.1
543,531 - -0.4
543,532 + -0.2
543,582 + MMJJ_RS02885 0.22 -0.9
543,625 + MMJJ_RS02885 0.34 +0.3
543,655 + MMJJ_RS02885 0.42 +0.1
543,695 - MMJJ_RS02885 0.54 -4.7
543,695 - MMJJ_RS02885 0.54 +0.2
543,696 + MMJJ_RS02885 0.54 +0.7
543,750 - MMJJ_RS02885 0.69 -0.6
543,753 - MMJJ_RS02885 0.70 +0.4
543,760 - MMJJ_RS02885 0.72 +0.4
543,855 - -0.6
543,855 - +0.4
543,855 - +0.1
543,856 + -0.2
543,856 + -2.3
543,856 + -0.0
543,920 - +0.3
544,077 + MMJJ_RS02890 0.24 -0.3
544,080 - MMJJ_RS02890 0.24 +0.1
544,101 - MMJJ_RS02890 0.27 +0.3
544,106 - MMJJ_RS02890 0.27 -0.3
544,107 + MMJJ_RS02890 0.28 +0.3
544,107 + MMJJ_RS02890 0.28 -0.4
544,111 + MMJJ_RS02890 0.28 +1.1
544,111 + MMJJ_RS02890 0.28 +0.6
544,122 - MMJJ_RS02890 0.29 +0.2
544,241 - MMJJ_RS02890 0.43 -0.5
544,300 + MMJJ_RS02890 0.50 +1.4
544,300 + MMJJ_RS02890 0.50 +0.8
544,357 + MMJJ_RS02890 0.57 +0.3
544,364 - MMJJ_RS02890 0.57 +0.4
544,365 + MMJJ_RS02890 0.58 +0.5
544,368 - MMJJ_RS02890 0.58 -0.5
544,369 + MMJJ_RS02890 0.58 -0.1
544,371 + MMJJ_RS02890 0.58 +1.0
544,398 - MMJJ_RS02890 0.61 +1.9
544,398 - MMJJ_RS02890 0.61 +1.2
544,398 - MMJJ_RS02890 0.61 -0.9
544,399 + MMJJ_RS02890 0.62 +1.2
544,399 + MMJJ_RS02890 0.62 -0.3
544,399 + MMJJ_RS02890 0.62 +0.2
544,403 - MMJJ_RS02890 0.62 -0.3
544,404 + MMJJ_RS02890 0.62 +0.3
544,429 - MMJJ_RS02890 0.65 -0.8
544,502 + MMJJ_RS02890 0.74 -1.6
544,502 + MMJJ_RS02890 0.74 -0.0
544,505 - MMJJ_RS02890 0.74 +0.5
544,510 + MMJJ_RS02890 0.74 -1.9
544,533 - MMJJ_RS02890 0.77 +0.3
544,534 + MMJJ_RS02890 0.77 +1.0
544,620 - MMJJ_RS02890 0.87 -1.3
544,620 - MMJJ_RS02890 0.87 +0.2
544,621 + MMJJ_RS02890 0.87 -0.1
544,630 + MMJJ_RS02890 0.88 +0.6
544,692 - +1.0
544,722 + -0.4
544,725 + -0.7
544,745 + -2.1
544,805 - +0.5
544,846 - MMJJ_RS02895 0.14 +0.2
544,853 + MMJJ_RS02895 0.15 +1.2
544,853 + MMJJ_RS02895 0.15 -1.6
544,881 + MMJJ_RS02895 0.18 +0.7
544,887 - MMJJ_RS02895 0.19 +0.5
544,888 + MMJJ_RS02895 0.19 -0.8
544,890 + MMJJ_RS02895 0.20 +0.6
544,890 + MMJJ_RS02895 0.20 -0.4
544,931 - MMJJ_RS02895 0.24 -0.4
544,932 + MMJJ_RS02895 0.24 -1.7
544,956 + MMJJ_RS02895 0.27 -1.6
544,988 + MMJJ_RS02895 0.31 -1.1
545,107 - MMJJ_RS02895 0.45 -2.1
545,156 + MMJJ_RS02895 0.51 +0.1
545,207 + MMJJ_RS02895 0.57 -0.7
545,227 - MMJJ_RS02895 0.59 +1.1
545,227 - MMJJ_RS02895 0.59 +0.3
545,239 - MMJJ_RS02895 0.61 -0.4
545,240 + MMJJ_RS02895 0.61 +0.2
545,252 - MMJJ_RS02895 0.62 -0.5
545,273 + MMJJ_RS02895 0.65 -0.5
545,291 - MMJJ_RS02895 0.67 -4.3
545,291 - MMJJ_RS02895 0.67 -0.1
545,291 - MMJJ_RS02895 0.67 -0.1
545,292 + MMJJ_RS02895 0.67 -0.4
545,356 + MMJJ_RS02895 0.75 -1.6
545,357 - MMJJ_RS02895 0.75 +1.1
545,358 + MMJJ_RS02895 0.75 +0.6
545,358 + MMJJ_RS02895 0.75 -1.3
545,359 - +1.2
545,359 - MMJJ_RS02895 0.75 -0.8
545,359 - MMJJ_RS02895 0.75 +0.3
545,359 - MMJJ_RS02895 0.75 +0.3
545,359 - MMJJ_RS02895 0.75 -0.2
545,360 + MMJJ_RS02895 0.75 +1.1
545,363 + MMJJ_RS02895 0.75 +0.0
545,370 + MMJJ_RS02895 0.76 +0.0
545,381 - MMJJ_RS02895 0.78 -0.0
545,438 + MMJJ_RS02895 0.84 +0.4
545,460 + MMJJ_RS02895 0.87 +0.2
545,462 - MMJJ_RS02895 0.87 -0.1
545,468 + MMJJ_RS02895 0.88 +0.2
545,471 - MMJJ_RS02895 0.88 +2.1
545,472 + MMJJ_RS02895 0.88 -2.1
545,472 + MMJJ_RS02895 0.88 +1.1
545,501 + -0.1
545,531 - +0.4
545,568 - -2.6
545,588 - +0.3
545,640 + -0.7
545,641 - -0.1
545,644 + +0.3
545,691 - -0.5
545,697 + +0.6
545,702 - -0.2
545,702 - +0.7
545,702 - -0.4
545,702 - -1.5
545,702 - +0.9
545,702 - -0.0
545,703 + -0.5
545,703 + -0.2
545,703 + -2.2

Or see this region's nucleotide sequence