Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS02665

Experiment: McCas-formate glass attached

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS02660 and MMJJ_RS02665 are separated by 794 nucleotidesMMJJ_RS02665 and MMJJ_RS02670 are separated by 32 nucleotidesMMJJ_RS02670 and MMJJ_RS02675 are separated by 303 nucleotides MMJJ_RS02660: MMJJ_RS02660 - hypothetical protein, at 498,952 to 499,365 _RS02660 MMJJ_RS02665: MMJJ_RS02665 - methyl-accepting chemotaxis protein, at 500,160 to 502,349 _RS02665 MMJJ_RS02670: MMJJ_RS02670 - hypothetical protein, at 502,382 to 502,870 _RS02670 MMJJ_RS02675: MMJJ_RS02675 - MarR family transcriptional regulator, at 503,174 to 503,629 _RS02675 Position (kb) 500 501 502 503Strain fitness (log2 ratio) -3 -2 -1 0 1at 501.094 kb on + strand, within MMJJ_RS02665at 501.094 kb on + strand, within MMJJ_RS02665at 502.066 kb on - strand, within MMJJ_RS02665at 502.066 kb on - strand, within MMJJ_RS02665

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas-formate glass attached
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501,094 + MMJJ_RS02665 0.43 +0.2
501,094 + MMJJ_RS02665 0.43 -3.4
502,066 - MMJJ_RS02665 0.87 +1.3
502,066 - MMJJ_RS02665 0.87 -0.1

Or see this region's nucleotide sequence