Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS01785

Experiment: McCas-formate glass attached

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS01775 and MMJJ_RS01780 are separated by 9 nucleotidesMMJJ_RS01780 and MMJJ_RS01785 are separated by 82 nucleotidesMMJJ_RS01785 and MMJJ_RS01790 are separated by 119 nucleotidesMMJJ_RS01790 and MMJJ_RS01795 are separated by 63 nucleotides MMJJ_RS01775: MMJJ_RS01775 - 50S ribosomal protein L34e, at 343,075 to 343,344 _RS01775 MMJJ_RS01780: MMJJ_RS01780 - AAA family ATPase, at 343,354 to 343,890 _RS01780 MMJJ_RS01785: MMJJ_RS01785 - 50S ribosomal protein L14e, at 343,973 to 344,206 _RS01785 MMJJ_RS01790: MMJJ_RS01790 - pyridoxamine 5'-phosphate oxidase family protein, at 344,326 to 344,727 _RS01790 MMJJ_RS01795: MMJJ_RS01795 - TIGR00266 family protein, at 344,791 to 345,459 _RS01795 Position (kb) 343 344 345Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 342.994 kb on - strandat 343.001 kb on - strandat 343.001 kb on - strandat 343.090 kb on - strandat 343.452 kb on - strand, within MMJJ_RS01780at 344.173 kb on - strand, within MMJJ_RS01785at 344.185 kb on + strandat 344.200 kb on + strandat 344.200 kb on + strandat 344.202 kb on - strandat 344.203 kb on + strandat 344.203 kb on + strandat 344.205 kb on + strandat 344.233 kb on - strandat 344.254 kb on - strandat 344.255 kb on + strandat 344.280 kb on + strandat 344.283 kb on + strandat 344.345 kb on + strandat 344.372 kb on + strand, within MMJJ_RS01790at 344.372 kb on + strand, within MMJJ_RS01790at 344.378 kb on - strand, within MMJJ_RS01790at 344.378 kb on - strand, within MMJJ_RS01790at 344.378 kb on - strand, within MMJJ_RS01790at 344.379 kb on + strand, within MMJJ_RS01790at 344.379 kb on + strand, within MMJJ_RS01790at 344.379 kb on + strand, within MMJJ_RS01790at 344.379 kb on + strand, within MMJJ_RS01790at 344.379 kb on + strand, within MMJJ_RS01790at 344.380 kb on - strand, within MMJJ_RS01790at 344.380 kb on - strand, within MMJJ_RS01790at 344.381 kb on + strand, within MMJJ_RS01790at 344.381 kb on + strand, within MMJJ_RS01790at 344.382 kb on - strand, within MMJJ_RS01790at 344.382 kb on - strand, within MMJJ_RS01790at 344.382 kb on - strand, within MMJJ_RS01790at 344.382 kb on - strand, within MMJJ_RS01790at 344.383 kb on + strand, within MMJJ_RS01790at 344.383 kb on + strand, within MMJJ_RS01790at 344.383 kb on + strand, within MMJJ_RS01790at 344.383 kb on + strand, within MMJJ_RS01790at 344.383 kb on + strand, within MMJJ_RS01790at 344.383 kb on + strand, within MMJJ_RS01790at 344.443 kb on - strand, within MMJJ_RS01790at 344.466 kb on + strand, within MMJJ_RS01790at 344.537 kb on + strand, within MMJJ_RS01790at 344.641 kb on - strand, within MMJJ_RS01790at 344.681 kb on + strand, within MMJJ_RS01790at 344.717 kb on + strandat 344.729 kb on - strandat 344.729 kb on - strandat 344.729 kb on - strandat 344.730 kb on + strandat 344.730 kb on + strandat 344.788 kb on - strandat 344.788 kb on - strandat 344.789 kb on + strandat 344.848 kb on + strandat 344.865 kb on + strand, within MMJJ_RS01795at 344.892 kb on + strand, within MMJJ_RS01795at 344.892 kb on + strand, within MMJJ_RS01795at 344.892 kb on + strand, within MMJJ_RS01795at 344.957 kb on + strand, within MMJJ_RS01795at 345.014 kb on + strand, within MMJJ_RS01795at 345.112 kb on + strand, within MMJJ_RS01795at 345.157 kb on - strand, within MMJJ_RS01795at 345.180 kb on + strand, within MMJJ_RS01795at 345.180 kb on + strand, within MMJJ_RS01795at 345.182 kb on + strand, within MMJJ_RS01795

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas-formate glass attached
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342,994 - +0.4
343,001 - +0.3
343,001 - +0.0
343,090 - -0.4
343,452 - MMJJ_RS01780 0.18 -1.0
344,173 - MMJJ_RS01785 0.85 +0.7
344,185 + +1.1
344,200 + +0.7
344,200 + -1.9
344,202 - -0.8
344,203 + +1.5
344,203 + -3.6
344,205 + -0.2
344,233 - +0.1
344,254 - +0.4
344,255 + +0.2
344,280 + -0.2
344,283 + +0.5
344,345 + -0.4
344,372 + MMJJ_RS01790 0.11 -3.6
344,372 + MMJJ_RS01790 0.11 +1.7
344,378 - MMJJ_RS01790 0.13 +0.7
344,378 - MMJJ_RS01790 0.13 +0.6
344,378 - MMJJ_RS01790 0.13 +0.0
344,379 + MMJJ_RS01790 0.13 +0.9
344,379 + MMJJ_RS01790 0.13 +0.6
344,379 + MMJJ_RS01790 0.13 +0.5
344,379 + MMJJ_RS01790 0.13 +0.2
344,379 + MMJJ_RS01790 0.13 +0.3
344,380 - MMJJ_RS01790 0.13 +1.2
344,380 - MMJJ_RS01790 0.13 +0.2
344,381 + MMJJ_RS01790 0.14 -3.5
344,381 + MMJJ_RS01790 0.14 +0.7
344,382 - MMJJ_RS01790 0.14 +0.5
344,382 - MMJJ_RS01790 0.14 +0.5
344,382 - MMJJ_RS01790 0.14 -0.1
344,382 - MMJJ_RS01790 0.14 +0.3
344,383 + MMJJ_RS01790 0.14 -0.1
344,383 + MMJJ_RS01790 0.14 +0.7
344,383 + MMJJ_RS01790 0.14 +0.1
344,383 + MMJJ_RS01790 0.14 +0.6
344,383 + MMJJ_RS01790 0.14 -1.0
344,383 + MMJJ_RS01790 0.14 +1.2
344,443 - MMJJ_RS01790 0.29 -1.0
344,466 + MMJJ_RS01790 0.35 -0.4
344,537 + MMJJ_RS01790 0.52 -0.2
344,641 - MMJJ_RS01790 0.78 +0.7
344,681 + MMJJ_RS01790 0.88 -0.4
344,717 + +0.4
344,729 - -1.0
344,729 - -2.2
344,729 - +0.2
344,730 + -0.8
344,730 + +0.4
344,788 - +0.7
344,788 - -0.6
344,789 + -0.5
344,848 + -1.0
344,865 + MMJJ_RS01795 0.11 -0.1
344,892 + MMJJ_RS01795 0.15 +1.1
344,892 + MMJJ_RS01795 0.15 +0.2
344,892 + MMJJ_RS01795 0.15 +0.7
344,957 + MMJJ_RS01795 0.25 +0.6
345,014 + MMJJ_RS01795 0.33 -0.7
345,112 + MMJJ_RS01795 0.48 -0.3
345,157 - MMJJ_RS01795 0.55 -1.6
345,180 + MMJJ_RS01795 0.58 -0.8
345,180 + MMJJ_RS01795 0.58 -3.9
345,182 + MMJJ_RS01795 0.58 +0.6

Or see this region's nucleotide sequence