Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS01535

Experiment: McCas-formate glass attached

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS01525 and MMJJ_RS01530 are separated by 102 nucleotidesMMJJ_RS01530 and MMJJ_RS01535 are separated by 9 nucleotidesMMJJ_RS01535 and MMJJ_RS01540 are separated by 85 nucleotidesMMJJ_RS01540 and MMJJ_RS01545 are separated by 12 nucleotides MMJJ_RS01525: MMJJ_RS01525 - ketopantoate reductase family protein, at 297,845 to 298,765 _RS01525 MMJJ_RS01530: MMJJ_RS01530 - YwbE family protein, at 298,868 to 299,062 _RS01530 MMJJ_RS01535: MMJJ_RS01535 - DMT family transporter, at 299,072 to 299,962 _RS01535 MMJJ_RS01540: MMJJ_RS01540 - 30S ribosomal protein S3ae, at 300,048 to 300,737 _RS01540 MMJJ_RS01545: MMJJ_RS01545 - hypothetical protein, at 300,750 to 301,358 _RS01545 Position (kb) 299 300Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 298.124 kb on - strand, within MMJJ_RS01525at 298.129 kb on - strand, within MMJJ_RS01525at 298.130 kb on + strand, within MMJJ_RS01525at 298.130 kb on + strand, within MMJJ_RS01525at 298.135 kb on - strand, within MMJJ_RS01525at 298.141 kb on - strand, within MMJJ_RS01525at 298.142 kb on + strand, within MMJJ_RS01525at 298.142 kb on + strand, within MMJJ_RS01525at 298.186 kb on - strand, within MMJJ_RS01525at 298.217 kb on + strand, within MMJJ_RS01525at 298.218 kb on - strand, within MMJJ_RS01525at 298.250 kb on + strand, within MMJJ_RS01525at 298.361 kb on - strand, within MMJJ_RS01525at 298.362 kb on + strand, within MMJJ_RS01525at 298.408 kb on - strand, within MMJJ_RS01525at 298.412 kb on + strand, within MMJJ_RS01525at 298.412 kb on + strand, within MMJJ_RS01525at 298.412 kb on + strand, within MMJJ_RS01525at 298.430 kb on + strand, within MMJJ_RS01525at 298.435 kb on - strand, within MMJJ_RS01525at 298.435 kb on - strand, within MMJJ_RS01525at 298.436 kb on + strand, within MMJJ_RS01525at 298.436 kb on + strand, within MMJJ_RS01525at 298.437 kb on - strand, within MMJJ_RS01525at 298.443 kb on + strand, within MMJJ_RS01525at 298.500 kb on + strand, within MMJJ_RS01525at 298.500 kb on + strand, within MMJJ_RS01525at 298.501 kb on - strandat 298.501 kb on - strand, within MMJJ_RS01525at 298.553 kb on - strand, within MMJJ_RS01525at 298.554 kb on + strand, within MMJJ_RS01525at 298.555 kb on - strand, within MMJJ_RS01525at 298.555 kb on - strand, within MMJJ_RS01525at 298.556 kb on + strand, within MMJJ_RS01525at 298.558 kb on - strand, within MMJJ_RS01525at 298.558 kb on - strand, within MMJJ_RS01525at 298.559 kb on + strand, within MMJJ_RS01525at 298.561 kb on - strand, within MMJJ_RS01525at 298.563 kb on - strand, within MMJJ_RS01525at 298.563 kb on - strand, within MMJJ_RS01525at 298.656 kb on + strand, within MMJJ_RS01525at 298.700 kb on - strandat 298.721 kb on - strandat 298.727 kb on - strandat 298.754 kb on - strandat 298.820 kb on - strandat 298.820 kb on - strandat 298.821 kb on + strandat 298.823 kb on - strandat 298.826 kb on - strandat 298.827 kb on + strandat 298.835 kb on - strandat 298.836 kb on + strandat 298.839 kb on - strandat 298.840 kb on + strandat 298.843 kb on - strandat 298.843 kb on - strandat 298.844 kb on + strandat 298.844 kb on + strandat 298.870 kb on + strandat 298.922 kb on - strand, within MMJJ_RS01530at 298.923 kb on + strand, within MMJJ_RS01530at 299.012 kb on - strand, within MMJJ_RS01530at 299.037 kb on + strand, within MMJJ_RS01530at 299.063 kb on + strandat 299.065 kb on - strandat 299.152 kb on + strandat 299.155 kb on - strandat 299.164 kb on - strand, within MMJJ_RS01535at 299.178 kb on + strand, within MMJJ_RS01535at 299.212 kb on - strand, within MMJJ_RS01535at 299.212 kb on - strand, within MMJJ_RS01535at 299.213 kb on + strand, within MMJJ_RS01535at 299.214 kb on - strand, within MMJJ_RS01535at 299.234 kb on + strand, within MMJJ_RS01535at 299.260 kb on - strand, within MMJJ_RS01535at 299.274 kb on - strand, within MMJJ_RS01535at 299.274 kb on - strand, within MMJJ_RS01535at 299.279 kb on - strand, within MMJJ_RS01535at 299.280 kb on + strand, within MMJJ_RS01535at 299.304 kb on - strand, within MMJJ_RS01535at 299.304 kb on - strand, within MMJJ_RS01535at 299.340 kb on + strand, within MMJJ_RS01535at 299.344 kb on - strand, within MMJJ_RS01535at 299.344 kb on - strand, within MMJJ_RS01535at 299.345 kb on + strand, within MMJJ_RS01535at 299.345 kb on + strand, within MMJJ_RS01535at 299.376 kb on + strand, within MMJJ_RS01535at 299.383 kb on - strand, within MMJJ_RS01535at 299.384 kb on + strand, within MMJJ_RS01535at 299.392 kb on - strand, within MMJJ_RS01535at 299.392 kb on - strand, within MMJJ_RS01535at 299.399 kb on - strand, within MMJJ_RS01535at 299.417 kb on - strand, within MMJJ_RS01535at 299.418 kb on + strand, within MMJJ_RS01535at 299.475 kb on - strand, within MMJJ_RS01535at 299.476 kb on + strand, within MMJJ_RS01535at 299.488 kb on - strand, within MMJJ_RS01535at 299.489 kb on + strand, within MMJJ_RS01535at 299.510 kb on - strand, within MMJJ_RS01535at 299.511 kb on + strand, within MMJJ_RS01535at 299.513 kb on + strand, within MMJJ_RS01535at 299.513 kb on + strand, within MMJJ_RS01535at 299.513 kb on + strand, within MMJJ_RS01535at 299.603 kb on - strand, within MMJJ_RS01535at 299.655 kb on + strand, within MMJJ_RS01535at 299.655 kb on + strand, within MMJJ_RS01535at 299.656 kb on - strand, within MMJJ_RS01535at 299.656 kb on - strand, within MMJJ_RS01535at 299.661 kb on + strand, within MMJJ_RS01535at 299.676 kb on + strand, within MMJJ_RS01535at 299.687 kb on + strand, within MMJJ_RS01535at 299.687 kb on + strand, within MMJJ_RS01535at 299.700 kb on - strand, within MMJJ_RS01535at 299.701 kb on + strand, within MMJJ_RS01535at 299.706 kb on + strand, within MMJJ_RS01535at 299.706 kb on + strand, within MMJJ_RS01535at 299.723 kb on - strand, within MMJJ_RS01535at 299.727 kb on - strand, within MMJJ_RS01535at 299.728 kb on + strand, within MMJJ_RS01535at 299.731 kb on + strand, within MMJJ_RS01535at 299.737 kb on - strand, within MMJJ_RS01535at 299.737 kb on - strand, within MMJJ_RS01535at 299.766 kb on - strand, within MMJJ_RS01535at 299.767 kb on + strand, within MMJJ_RS01535at 299.767 kb on + strand, within MMJJ_RS01535at 299.834 kb on - strand, within MMJJ_RS01535at 299.835 kb on + strand, within MMJJ_RS01535at 299.835 kb on + strand, within MMJJ_RS01535at 299.835 kb on + strand, within MMJJ_RS01535at 299.835 kb on + strand, within MMJJ_RS01535at 299.844 kb on + strand, within MMJJ_RS01535at 299.845 kb on - strand, within MMJJ_RS01535at 299.853 kb on + strand, within MMJJ_RS01535at 299.853 kb on + strand, within MMJJ_RS01535at 299.857 kb on - strand, within MMJJ_RS01535at 299.857 kb on - strand, within MMJJ_RS01535at 299.858 kb on + strand, within MMJJ_RS01535at 299.858 kb on + strand, within MMJJ_RS01535at 299.858 kb on + strand, within MMJJ_RS01535at 299.876 kb on - strandat 299.877 kb on + strandat 299.895 kb on + strandat 299.925 kb on + strandat 299.985 kb on - strandat 299.989 kb on - strandat 300.003 kb on + strandat 300.655 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas-formate glass attached
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298,124 - MMJJ_RS01525 0.30 +0.4
298,129 - MMJJ_RS01525 0.31 +0.1
298,130 + MMJJ_RS01525 0.31 -0.8
298,130 + MMJJ_RS01525 0.31 -0.7
298,135 - MMJJ_RS01525 0.31 +1.1
298,141 - MMJJ_RS01525 0.32 -0.0
298,142 + MMJJ_RS01525 0.32 -2.9
298,142 + MMJJ_RS01525 0.32 -0.2
298,186 - MMJJ_RS01525 0.37 -0.2
298,217 + MMJJ_RS01525 0.40 +0.3
298,218 - MMJJ_RS01525 0.40 +0.1
298,250 + MMJJ_RS01525 0.44 +0.3
298,361 - MMJJ_RS01525 0.56 -0.2
298,362 + MMJJ_RS01525 0.56 -5.5
298,408 - MMJJ_RS01525 0.61 -1.1
298,412 + MMJJ_RS01525 0.62 -0.7
298,412 + MMJJ_RS01525 0.62 -0.7
298,412 + MMJJ_RS01525 0.62 +0.7
298,430 + MMJJ_RS01525 0.64 -1.5
298,435 - MMJJ_RS01525 0.64 -1.2
298,435 - MMJJ_RS01525 0.64 +0.5
298,436 + MMJJ_RS01525 0.64 -0.7
298,436 + MMJJ_RS01525 0.64 +1.5
298,437 - MMJJ_RS01525 0.64 +0.3
298,443 + MMJJ_RS01525 0.65 +0.5
298,500 + MMJJ_RS01525 0.71 +0.5
298,500 + MMJJ_RS01525 0.71 -2.2
298,501 - +2.5
298,501 - MMJJ_RS01525 0.71 -4.6
298,553 - MMJJ_RS01525 0.77 +0.4
298,554 + MMJJ_RS01525 0.77 -1.2
298,555 - MMJJ_RS01525 0.77 -1.0
298,555 - MMJJ_RS01525 0.77 +0.8
298,556 + MMJJ_RS01525 0.77 +0.3
298,558 - MMJJ_RS01525 0.77 -0.6
298,558 - MMJJ_RS01525 0.77 +0.2
298,559 + MMJJ_RS01525 0.78 -0.1
298,561 - MMJJ_RS01525 0.78 +0.2
298,563 - MMJJ_RS01525 0.78 +0.5
298,563 - MMJJ_RS01525 0.78 +0.6
298,656 + MMJJ_RS01525 0.88 -3.3
298,700 - -0.3
298,721 - -0.7
298,727 - -2.3
298,754 - -0.4
298,820 - -0.5
298,820 - +0.4
298,821 + -0.9
298,823 - +0.1
298,826 - -0.4
298,827 + +0.5
298,835 - +0.2
298,836 + +1.0
298,839 - -1.0
298,840 + -0.7
298,843 - +0.4
298,843 - +0.5
298,844 + -0.5
298,844 + +0.7
298,870 + +0.7
298,922 - MMJJ_RS01530 0.28 +0.9
298,923 + MMJJ_RS01530 0.28 +0.3
299,012 - MMJJ_RS01530 0.74 -0.4
299,037 + MMJJ_RS01530 0.87 +0.4
299,063 + -1.0
299,065 - -0.8
299,152 + -1.5
299,155 - -0.1
299,164 - MMJJ_RS01535 0.10 -1.3
299,178 + MMJJ_RS01535 0.12 -0.4
299,212 - MMJJ_RS01535 0.16 +1.2
299,212 - MMJJ_RS01535 0.16 +0.1
299,213 + MMJJ_RS01535 0.16 +0.6
299,214 - MMJJ_RS01535 0.16 +0.0
299,234 + MMJJ_RS01535 0.18 -0.8
299,260 - MMJJ_RS01535 0.21 +0.7
299,274 - MMJJ_RS01535 0.23 +0.6
299,274 - MMJJ_RS01535 0.23 +0.6
299,279 - MMJJ_RS01535 0.23 +0.0
299,280 + MMJJ_RS01535 0.23 -1.5
299,304 - MMJJ_RS01535 0.26 -0.1
299,304 - MMJJ_RS01535 0.26 +0.5
299,340 + MMJJ_RS01535 0.30 +0.1
299,344 - MMJJ_RS01535 0.31 +1.1
299,344 - MMJJ_RS01535 0.31 +2.2
299,345 + MMJJ_RS01535 0.31 -0.4
299,345 + MMJJ_RS01535 0.31 -0.2
299,376 + MMJJ_RS01535 0.34 -0.6
299,383 - MMJJ_RS01535 0.35 -0.3
299,384 + MMJJ_RS01535 0.35 +1.7
299,392 - MMJJ_RS01535 0.36 +0.8
299,392 - MMJJ_RS01535 0.36 +0.6
299,399 - MMJJ_RS01535 0.37 +0.2
299,417 - MMJJ_RS01535 0.39 -0.5
299,418 + MMJJ_RS01535 0.39 +1.3
299,475 - MMJJ_RS01535 0.45 +0.5
299,476 + MMJJ_RS01535 0.45 +0.7
299,488 - MMJJ_RS01535 0.47 +0.6
299,489 + MMJJ_RS01535 0.47 -1.0
299,510 - MMJJ_RS01535 0.49 -1.6
299,511 + MMJJ_RS01535 0.49 -4.0
299,513 + MMJJ_RS01535 0.49 +0.2
299,513 + MMJJ_RS01535 0.49 -0.0
299,513 + MMJJ_RS01535 0.49 +1.1
299,603 - MMJJ_RS01535 0.60 +0.1
299,655 + MMJJ_RS01535 0.65 +0.1
299,655 + MMJJ_RS01535 0.65 +0.2
299,656 - MMJJ_RS01535 0.66 +0.3
299,656 - MMJJ_RS01535 0.66 +0.9
299,661 + MMJJ_RS01535 0.66 -0.1
299,676 + MMJJ_RS01535 0.68 -0.4
299,687 + MMJJ_RS01535 0.69 +1.2
299,687 + MMJJ_RS01535 0.69 +1.1
299,700 - MMJJ_RS01535 0.70 +1.0
299,701 + MMJJ_RS01535 0.71 -1.1
299,706 + MMJJ_RS01535 0.71 -1.7
299,706 + MMJJ_RS01535 0.71 -3.0
299,723 - MMJJ_RS01535 0.73 -0.4
299,727 - MMJJ_RS01535 0.74 +0.4
299,728 + MMJJ_RS01535 0.74 -0.0
299,731 + MMJJ_RS01535 0.74 +0.5
299,737 - MMJJ_RS01535 0.75 -0.3
299,737 - MMJJ_RS01535 0.75 -0.4
299,766 - MMJJ_RS01535 0.78 +0.8
299,767 + MMJJ_RS01535 0.78 -0.3
299,767 + MMJJ_RS01535 0.78 +0.2
299,834 - MMJJ_RS01535 0.86 +0.5
299,835 + MMJJ_RS01535 0.86 +1.5
299,835 + MMJJ_RS01535 0.86 +1.1
299,835 + MMJJ_RS01535 0.86 +0.2
299,835 + MMJJ_RS01535 0.86 +0.8
299,844 + MMJJ_RS01535 0.87 -0.8
299,845 - MMJJ_RS01535 0.87 +0.2
299,853 + MMJJ_RS01535 0.88 -4.0
299,853 + MMJJ_RS01535 0.88 -2.1
299,857 - MMJJ_RS01535 0.88 +0.6
299,857 - MMJJ_RS01535 0.88 +1.1
299,858 + MMJJ_RS01535 0.88 -0.0
299,858 + MMJJ_RS01535 0.88 -2.5
299,858 + MMJJ_RS01535 0.88 +1.1
299,876 - -2.2
299,877 + +0.4
299,895 + +0.6
299,925 + -3.8
299,985 - +0.1
299,989 - +0.3
300,003 + -0.2
300,655 - +1.2

Or see this region's nucleotide sequence