Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS01275

Experiment: McCas-formate glass attached

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS01265 and MMJJ_RS01270 are separated by 17 nucleotidesMMJJ_RS01270 and MMJJ_RS01275 are separated by 40 nucleotidesMMJJ_RS01275 and MMJJ_RS01280 are separated by 102 nucleotides MMJJ_RS01265: MMJJ_RS01265 - cupin domain-containing protein, at 244,388 to 244,732 _RS01265 MMJJ_RS01270: MMJJ_RS01270 - 4Fe-4S binding protein, at 244,750 to 245,382 _RS01270 MMJJ_RS01275: MMJJ_RS01275 - 4Fe-4S dicluster domain-containing protein, at 245,423 to 246,121 _RS01275 MMJJ_RS01280: MMJJ_RS01280 - hydroxylamine reductase, at 246,224 to 247,864 _RS01280 Position (kb) 245 246 247Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 244.506 kb on + strand, within MMJJ_RS01265at 244.506 kb on + strand, within MMJJ_RS01265at 244.506 kb on + strand, within MMJJ_RS01265at 244.511 kb on - strand, within MMJJ_RS01265at 244.583 kb on - strand, within MMJJ_RS01265at 244.584 kb on + strand, within MMJJ_RS01265at 244.644 kb on + strand, within MMJJ_RS01265at 244.644 kb on + strand, within MMJJ_RS01265at 244.652 kb on - strand, within MMJJ_RS01265at 244.674 kb on + strand, within MMJJ_RS01265at 244.674 kb on + strand, within MMJJ_RS01265at 244.735 kb on - strandat 244.763 kb on - strandat 244.763 kb on - strandat 244.768 kb on - strandat 244.789 kb on - strandat 244.876 kb on - strand, within MMJJ_RS01270at 244.893 kb on - strand, within MMJJ_RS01270at 244.893 kb on - strand, within MMJJ_RS01270at 244.903 kb on + strand, within MMJJ_RS01270at 244.928 kb on - strand, within MMJJ_RS01270at 244.928 kb on - strand, within MMJJ_RS01270at 245.013 kb on - strand, within MMJJ_RS01270at 245.040 kb on - strand, within MMJJ_RS01270at 245.107 kb on - strand, within MMJJ_RS01270at 245.108 kb on + strand, within MMJJ_RS01270at 245.143 kb on - strand, within MMJJ_RS01270at 245.181 kb on - strand, within MMJJ_RS01270at 245.197 kb on - strand, within MMJJ_RS01270at 245.197 kb on - strand, within MMJJ_RS01270at 245.208 kb on - strand, within MMJJ_RS01270at 245.215 kb on + strand, within MMJJ_RS01270at 245.218 kb on - strand, within MMJJ_RS01270at 245.244 kb on + strand, within MMJJ_RS01270at 245.244 kb on + strand, within MMJJ_RS01270at 245.244 kb on + strand, within MMJJ_RS01270at 245.267 kb on + strand, within MMJJ_RS01270at 245.317 kb on + strand, within MMJJ_RS01270at 245.467 kb on - strandat 245.472 kb on + strandat 245.472 kb on + strandat 245.477 kb on - strandat 245.550 kb on + strand, within MMJJ_RS01275at 245.630 kb on - strand, within MMJJ_RS01275at 245.630 kb on - strand, within MMJJ_RS01275at 245.722 kb on - strand, within MMJJ_RS01275at 245.727 kb on - strand, within MMJJ_RS01275at 245.727 kb on - strand, within MMJJ_RS01275at 245.728 kb on + strand, within MMJJ_RS01275at 245.992 kb on - strand, within MMJJ_RS01275at 246.030 kb on + strand, within MMJJ_RS01275at 246.034 kb on - strand, within MMJJ_RS01275at 246.034 kb on - strand, within MMJJ_RS01275at 246.034 kb on - strand, within MMJJ_RS01275at 246.074 kb on + strandat 246.138 kb on - strandat 246.138 kb on - strandat 246.138 kb on - strandat 246.138 kb on - strandat 246.139 kb on + strandat 246.143 kb on + strandat 246.159 kb on - strandat 246.205 kb on - strandat 246.205 kb on - strandat 246.206 kb on + strandat 246.209 kb on + strandat 246.218 kb on + strandat 246.266 kb on - strandat 246.287 kb on + strandat 246.297 kb on + strandat 246.418 kb on - strand, within MMJJ_RS01280at 246.599 kb on + strand, within MMJJ_RS01280at 246.639 kb on - strand, within MMJJ_RS01280at 246.640 kb on + strand, within MMJJ_RS01280at 246.652 kb on - strand, within MMJJ_RS01280at 246.693 kb on + strand, within MMJJ_RS01280at 246.788 kb on - strand, within MMJJ_RS01280at 246.862 kb on + strand, within MMJJ_RS01280at 246.866 kb on + strand, within MMJJ_RS01280at 246.866 kb on + strand, within MMJJ_RS01280at 246.897 kb on - strand, within MMJJ_RS01280at 246.898 kb on + strand, within MMJJ_RS01280at 246.913 kb on + strand, within MMJJ_RS01280at 246.965 kb on + strand, within MMJJ_RS01280at 247.030 kb on + strand, within MMJJ_RS01280at 247.050 kb on - strand, within MMJJ_RS01280at 247.050 kb on - strand, within MMJJ_RS01280at 247.050 kb on - strand, within MMJJ_RS01280at 247.078 kb on - strand, within MMJJ_RS01280at 247.080 kb on - strand, within MMJJ_RS01280at 247.081 kb on + strand, within MMJJ_RS01280at 247.081 kb on + strand, within MMJJ_RS01280at 247.082 kb on - strand, within MMJJ_RS01280at 247.082 kb on - strand, within MMJJ_RS01280at 247.082 kb on - strand, within MMJJ_RS01280at 247.082 kb on - strand, within MMJJ_RS01280at 247.082 kb on - strand, within MMJJ_RS01280at 247.082 kb on - strand, within MMJJ_RS01280at 247.082 kb on - strand, within MMJJ_RS01280at 247.082 kb on - strand, within MMJJ_RS01280at 247.083 kb on + strand, within MMJJ_RS01280at 247.083 kb on + strand, within MMJJ_RS01280at 247.083 kb on + strand, within MMJJ_RS01280at 247.083 kb on + strand, within MMJJ_RS01280at 247.083 kb on + strand, within MMJJ_RS01280at 247.083 kb on + strand, within MMJJ_RS01280at 247.083 kb on + strand, within MMJJ_RS01280at 247.083 kb on + strand, within MMJJ_RS01280at 247.112 kb on - strand, within MMJJ_RS01280

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas-formate glass attached
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244,506 + MMJJ_RS01265 0.34 +0.4
244,506 + MMJJ_RS01265 0.34 -4.6
244,506 + MMJJ_RS01265 0.34 +0.4
244,511 - MMJJ_RS01265 0.36 -0.2
244,583 - MMJJ_RS01265 0.57 -1.7
244,584 + MMJJ_RS01265 0.57 +0.2
244,644 + MMJJ_RS01265 0.74 +0.4
244,644 + MMJJ_RS01265 0.74 +1.6
244,652 - MMJJ_RS01265 0.77 +0.7
244,674 + MMJJ_RS01265 0.83 +0.5
244,674 + MMJJ_RS01265 0.83 -0.4
244,735 - -4.5
244,763 - +0.1
244,763 - -0.4
244,768 - -1.2
244,789 - -0.6
244,876 - MMJJ_RS01270 0.20 +1.7
244,893 - MMJJ_RS01270 0.23 +1.0
244,893 - MMJJ_RS01270 0.23 -0.3
244,903 + MMJJ_RS01270 0.24 +0.5
244,928 - MMJJ_RS01270 0.28 -1.5
244,928 - MMJJ_RS01270 0.28 -2.1
245,013 - MMJJ_RS01270 0.42 -0.3
245,040 - MMJJ_RS01270 0.46 -0.3
245,107 - MMJJ_RS01270 0.56 +0.7
245,108 + MMJJ_RS01270 0.57 -0.9
245,143 - MMJJ_RS01270 0.62 -0.1
245,181 - MMJJ_RS01270 0.68 +0.3
245,197 - MMJJ_RS01270 0.71 +0.5
245,197 - MMJJ_RS01270 0.71 -3.4
245,208 - MMJJ_RS01270 0.72 +0.2
245,215 + MMJJ_RS01270 0.73 -2.2
245,218 - MMJJ_RS01270 0.74 -1.1
245,244 + MMJJ_RS01270 0.78 +0.0
245,244 + MMJJ_RS01270 0.78 -0.5
245,244 + MMJJ_RS01270 0.78 -0.2
245,267 + MMJJ_RS01270 0.82 +0.5
245,317 + MMJJ_RS01270 0.90 +0.3
245,467 - +0.9
245,472 + +0.1
245,472 + -0.5
245,477 - +0.4
245,550 + MMJJ_RS01275 0.18 -0.2
245,630 - MMJJ_RS01275 0.30 +0.5
245,630 - MMJJ_RS01275 0.30 +0.4
245,722 - MMJJ_RS01275 0.43 +0.1
245,727 - MMJJ_RS01275 0.43 -2.4
245,727 - MMJJ_RS01275 0.43 +0.7
245,728 + MMJJ_RS01275 0.44 +0.2
245,992 - MMJJ_RS01275 0.81 -2.6
246,030 + MMJJ_RS01275 0.87 +0.4
246,034 - MMJJ_RS01275 0.87 +0.2
246,034 - MMJJ_RS01275 0.87 -1.4
246,034 - MMJJ_RS01275 0.87 +0.7
246,074 + +0.2
246,138 - -3.7
246,138 - +1.5
246,138 - -0.7
246,138 - +0.0
246,139 + +0.6
246,143 + -0.2
246,159 - -0.6
246,205 - +0.3
246,205 - +0.2
246,206 + +0.0
246,209 + -0.2
246,218 + -1.1
246,266 - -2.4
246,287 + +0.5
246,297 + +0.1
246,418 - MMJJ_RS01280 0.12 -1.5
246,599 + MMJJ_RS01280 0.23 +1.2
246,639 - MMJJ_RS01280 0.25 +0.6
246,640 + MMJJ_RS01280 0.25 +0.5
246,652 - MMJJ_RS01280 0.26 +0.3
246,693 + MMJJ_RS01280 0.29 -0.5
246,788 - MMJJ_RS01280 0.34 -0.3
246,862 + MMJJ_RS01280 0.39 -0.7
246,866 + MMJJ_RS01280 0.39 +0.6
246,866 + MMJJ_RS01280 0.39 +0.4
246,897 - MMJJ_RS01280 0.41 -0.1
246,898 + MMJJ_RS01280 0.41 -0.2
246,913 + MMJJ_RS01280 0.42 -0.4
246,965 + MMJJ_RS01280 0.45 -1.3
247,030 + MMJJ_RS01280 0.49 +1.2
247,050 - MMJJ_RS01280 0.50 +0.3
247,050 - MMJJ_RS01280 0.50 +0.0
247,050 - MMJJ_RS01280 0.50 +0.4
247,078 - MMJJ_RS01280 0.52 +0.3
247,080 - MMJJ_RS01280 0.52 -0.4
247,081 + MMJJ_RS01280 0.52 +0.6
247,081 + MMJJ_RS01280 0.52 -0.6
247,082 - MMJJ_RS01280 0.52 +1.0
247,082 - MMJJ_RS01280 0.52 -1.8
247,082 - MMJJ_RS01280 0.52 +0.6
247,082 - MMJJ_RS01280 0.52 +0.4
247,082 - MMJJ_RS01280 0.52 -1.2
247,082 - MMJJ_RS01280 0.52 +0.1
247,082 - MMJJ_RS01280 0.52 -1.9
247,082 - MMJJ_RS01280 0.52 -0.4
247,083 + MMJJ_RS01280 0.52 -0.0
247,083 + MMJJ_RS01280 0.52 +1.1
247,083 + MMJJ_RS01280 0.52 +0.5
247,083 + MMJJ_RS01280 0.52 -5.9
247,083 + MMJJ_RS01280 0.52 +0.6
247,083 + MMJJ_RS01280 0.52 -0.2
247,083 + MMJJ_RS01280 0.52 -0.7
247,083 + MMJJ_RS01280 0.52 -3.9
247,112 - MMJJ_RS01280 0.54 -2.3

Or see this region's nucleotide sequence