Experiment: McCas-formate glass attached
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS00420 and MMJJ_RS00425 are separated by 185 nucleotides MMJJ_RS00425 and MMJJ_RS00430 are separated by 28 nucleotides MMJJ_RS00430 and MMJJ_RS00435 are separated by 14 nucleotides MMJJ_RS00435 and MMJJ_RS00440 are separated by 80 nucleotides
MMJJ_RS00420: MMJJ_RS00420 - CBS domain-containing protein, at 76,958 to 77,338
_RS00420
MMJJ_RS00425: MMJJ_RS00425 - hypothetical protein, at 77,524 to 77,916
_RS00425
MMJJ_RS00430: MMJJ_RS00430 - ribonuclease Z, at 77,945 to 78,871
_RS00430
MMJJ_RS00435: MMJJ_RS00435 - hypothetical protein, at 78,886 to 79,464
_RS00435
MMJJ_RS00440: MMJJ_RS00440 - selenide, water dikinase SelD, at 79,545 to 80,552
_RS00440
Position (kb) 77
78
79 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 76.982 kb on - strand at 76.998 kb on + strand, within MMJJ_RS00420 at 76.999 kb on - strand, within MMJJ_RS00420 at 77.030 kb on - strand, within MMJJ_RS00420 at 77.045 kb on - strand, within MMJJ_RS00420 at 77.108 kb on - strand, within MMJJ_RS00420 at 77.138 kb on - strand, within MMJJ_RS00420 at 77.138 kb on - strand, within MMJJ_RS00420 at 77.138 kb on - strand, within MMJJ_RS00420 at 77.139 kb on + strand, within MMJJ_RS00420 at 77.139 kb on + strand, within MMJJ_RS00420 at 77.199 kb on + strand, within MMJJ_RS00420 at 77.199 kb on + strand, within MMJJ_RS00420 at 77.199 kb on + strand, within MMJJ_RS00420 at 77.200 kb on - strand, within MMJJ_RS00420 at 77.222 kb on - strand, within MMJJ_RS00420 at 77.222 kb on - strand, within MMJJ_RS00420 at 77.223 kb on + strand, within MMJJ_RS00420 at 77.228 kb on - strand, within MMJJ_RS00420 at 77.229 kb on + strand, within MMJJ_RS00420 at 77.252 kb on + strand, within MMJJ_RS00420 at 77.262 kb on + strand, within MMJJ_RS00420 at 77.266 kb on - strand, within MMJJ_RS00420 at 77.367 kb on - strand at 77.370 kb on - strand at 77.370 kb on - strand at 77.371 kb on + strand at 77.372 kb on - strand at 77.372 kb on - strand at 77.373 kb on + strand at 77.373 kb on + strand at 77.374 kb on - strand at 77.374 kb on - strand at 77.375 kb on + strand at 77.379 kb on + strand at 77.427 kb on + strand at 77.441 kb on - strand at 77.441 kb on - strand at 77.445 kb on - strand at 77.446 kb on + strand at 77.446 kb on + strand at 77.446 kb on + strand at 77.446 kb on + strand at 77.446 kb on + strand at 77.447 kb on - strand at 77.451 kb on + strand at 77.456 kb on + strand at 77.465 kb on - strand at 77.469 kb on + strand at 77.469 kb on + strand at 77.484 kb on - strand at 77.484 kb on - strand at 77.485 kb on + strand at 77.485 kb on + strand at 77.485 kb on + strand at 77.486 kb on - strand at 77.486 kb on - strand at 77.486 kb on - strand at 77.486 kb on - strand at 77.486 kb on - strand at 77.486 kb on - strand at 77.486 kb on - strand at 77.487 kb on + strand at 77.487 kb on + strand at 77.487 kb on + strand at 77.487 kb on + strand at 77.487 kb on + strand at 77.488 kb on - strand at 77.488 kb on - strand at 77.489 kb on + strand at 77.489 kb on + strand at 77.489 kb on + strand at 77.489 kb on + strand at 77.500 kb on - strand at 77.500 kb on - strand at 77.506 kb on + strand at 77.541 kb on - strand at 77.541 kb on - strand at 77.541 kb on - strand at 77.541 kb on - strand at 77.542 kb on + strand at 77.542 kb on + strand at 77.542 kb on + strand at 77.544 kb on - strand at 77.562 kb on - strand at 77.563 kb on + strand at 77.563 kb on + strand at 77.577 kb on - strand, within MMJJ_RS00425 at 77.620 kb on - strand, within MMJJ_RS00425 at 77.621 kb on + strand, within MMJJ_RS00425 at 77.621 kb on + strand, within MMJJ_RS00425 at 77.675 kb on - strand, within MMJJ_RS00425 at 77.874 kb on + strand, within MMJJ_RS00425 at 77.927 kb on - strand at 77.932 kb on - strand at 77.933 kb on + strand at 77.933 kb on + strand at 77.933 kb on + strand at 77.934 kb on - strand at 77.935 kb on + strand at 77.935 kb on + strand at 77.984 kb on + strand at 78.087 kb on - strand, within MMJJ_RS00430 at 78.357 kb on - strand, within MMJJ_RS00430 at 78.485 kb on + strand, within MMJJ_RS00430 at 78.742 kb on + strand, within MMJJ_RS00430 at 78.775 kb on + strand, within MMJJ_RS00430 at 78.876 kb on + strand at 78.876 kb on + strand at 78.876 kb on + strand at 78.895 kb on - strand at 78.904 kb on - strand at 78.905 kb on + strand at 78.935 kb on - strand at 78.940 kb on - strand at 78.941 kb on + strand at 78.948 kb on + strand, within MMJJ_RS00435 at 79.014 kb on + strand, within MMJJ_RS00435 at 79.023 kb on - strand, within MMJJ_RS00435 at 79.028 kb on - strand, within MMJJ_RS00435 at 79.029 kb on + strand, within MMJJ_RS00435 at 79.064 kb on - strand, within MMJJ_RS00435 at 79.064 kb on - strand, within MMJJ_RS00435 at 79.069 kb on - strand, within MMJJ_RS00435 at 79.070 kb on + strand, within MMJJ_RS00435 at 79.271 kb on - strand, within MMJJ_RS00435 at 79.271 kb on - strand, within MMJJ_RS00435 at 79.271 kb on - strand, within MMJJ_RS00435 at 79.271 kb on - strand, within MMJJ_RS00435 at 79.271 kb on - strand, within MMJJ_RS00435 at 79.271 kb on - strand, within MMJJ_RS00435 at 79.272 kb on + strand, within MMJJ_RS00435 at 79.272 kb on + strand, within MMJJ_RS00435 at 79.272 kb on + strand, within MMJJ_RS00435 at 79.272 kb on + strand, within MMJJ_RS00435 at 79.272 kb on + strand, within MMJJ_RS00435 at 79.272 kb on + strand, within MMJJ_RS00435 at 79.283 kb on - strand, within MMJJ_RS00435 at 79.284 kb on + strand, within MMJJ_RS00435 at 79.332 kb on - strand, within MMJJ_RS00435 at 79.350 kb on - strand, within MMJJ_RS00435 at 79.351 kb on + strand, within MMJJ_RS00435 at 79.376 kb on - strand, within MMJJ_RS00435 at 79.377 kb on + strand, within MMJJ_RS00435 at 79.392 kb on - strand, within MMJJ_RS00435 at 79.392 kb on - strand, within MMJJ_RS00435 at 79.392 kb on - strand, within MMJJ_RS00435 at 79.398 kb on - strand, within MMJJ_RS00435 at 79.398 kb on - strand, within MMJJ_RS00435 at 79.419 kb on + strand at 79.428 kb on + strand at 79.428 kb on + strand at 79.428 kb on + strand at 79.428 kb on + strand at 79.431 kb on + strand at 79.431 kb on + strand at 79.431 kb on + strand at 79.462 kb on - strand at 79.463 kb on + strand at 79.479 kb on - strand at 79.480 kb on + strand at 79.480 kb on + strand at 79.480 kb on + strand at 79.481 kb on - strand at 79.482 kb on + strand at 79.482 kb on + strand at 79.482 kb on + strand at 79.482 kb on + strand at 79.499 kb on + strand at 79.531 kb on - strand at 79.532 kb on + strand at 79.551 kb on + strand at 79.555 kb on - strand at 79.601 kb on + strand at 79.604 kb on + strand at 79.604 kb on + strand at 79.635 kb on - strand at 79.726 kb on - strand, within MMJJ_RS00440 at 79.727 kb on + strand, within MMJJ_RS00440 at 79.764 kb on + strand, within MMJJ_RS00440 at 79.780 kb on - strand, within MMJJ_RS00440 at 79.780 kb on - strand, within MMJJ_RS00440 at 79.780 kb on - strand, within MMJJ_RS00440 at 79.780 kb on - strand, within MMJJ_RS00440 at 79.780 kb on - strand, within MMJJ_RS00440 at 79.780 kb on - strand, within MMJJ_RS00440 at 79.780 kb on - strand, within MMJJ_RS00440 at 79.781 kb on + strand, within MMJJ_RS00440 at 79.781 kb on + strand, within MMJJ_RS00440 at 79.781 kb on + strand, within MMJJ_RS00440 at 79.781 kb on + strand, within MMJJ_RS00440 at 79.783 kb on + strand, within MMJJ_RS00440 at 79.819 kb on - strand, within MMJJ_RS00440
Per-strain Table
Position Strand Gene LocusTag Fraction McCas-formate glass attached remove 76,982 - -0.2 76,998 + MMJJ_RS00420 0.10 -0.9 76,999 - MMJJ_RS00420 0.11 +0.3 77,030 - MMJJ_RS00420 0.19 -1.1 77,045 - MMJJ_RS00420 0.23 -0.9 77,108 - MMJJ_RS00420 0.39 -2.4 77,138 - MMJJ_RS00420 0.47 -2.3 77,138 - MMJJ_RS00420 0.47 +0.3 77,138 - MMJJ_RS00420 0.47 +0.2 77,139 + MMJJ_RS00420 0.48 -0.2 77,139 + MMJJ_RS00420 0.48 -0.7 77,199 + MMJJ_RS00420 0.63 -1.8 77,199 + MMJJ_RS00420 0.63 -0.2 77,199 + MMJJ_RS00420 0.63 -4.2 77,200 - MMJJ_RS00420 0.64 +0.2 77,222 - MMJJ_RS00420 0.69 -0.6 77,222 - MMJJ_RS00420 0.69 -3.2 77,223 + MMJJ_RS00420 0.70 -1.1 77,228 - MMJJ_RS00420 0.71 +0.4 77,229 + MMJJ_RS00420 0.71 -3.2 77,252 + MMJJ_RS00420 0.77 -3.8 77,262 + MMJJ_RS00420 0.80 -0.0 77,266 - MMJJ_RS00420 0.81 +0.6 77,367 - -0.7 77,370 - +1.0 77,370 - -0.2 77,371 + +0.3 77,372 - -0.5 77,372 - -4.1 77,373 + +0.2 77,373 + -0.7 77,374 - +0.9 77,374 - -0.4 77,375 + -0.2 77,379 + -0.1 77,427 + +1.6 77,441 - -1.4 77,441 - -5.1 77,445 - -3.9 77,446 + -0.7 77,446 + -0.9 77,446 + +0.0 77,446 + -3.8 77,446 + -1.1 77,447 - -1.1 77,451 + -2.1 77,456 + -0.2 77,465 - -4.0 77,469 + +0.5 77,469 + +0.6 77,484 - -0.1 77,484 - +2.1 77,485 + +0.7 77,485 + -0.4 77,485 + -0.1 77,486 - -3.5 77,486 - +0.6 77,486 - -1.2 77,486 - -0.5 77,486 - -5.1 77,486 - -0.2 77,486 - +1.2 77,487 + -2.8 77,487 + +0.4 77,487 + -0.3 77,487 + +0.0 77,487 + -4.3 77,488 - -2.5 77,488 - -1.7 77,489 + -0.6 77,489 + -3.6 77,489 + +0.7 77,489 + -1.7 77,500 - -0.9 77,500 - -0.4 77,506 + -4.6 77,541 - -0.6 77,541 - -1.5 77,541 - -0.0 77,541 - -4.7 77,542 + -3.3 77,542 + +0.2 77,542 + -0.2 77,544 - -1.9 77,562 - -3.2 77,563 + -1.3 77,563 + +0.4 77,577 - MMJJ_RS00425 0.13 -1.9 77,620 - MMJJ_RS00425 0.24 -1.4 77,621 + MMJJ_RS00425 0.25 -3.5 77,621 + MMJJ_RS00425 0.25 -2.2 77,675 - MMJJ_RS00425 0.38 -3.4 77,874 + MMJJ_RS00425 0.89 -1.4 77,927 - -2.1 77,932 - -2.2 77,933 + -5.1 77,933 + -0.4 77,933 + -1.1 77,934 - +0.2 77,935 + -2.4 77,935 + -1.3 77,984 + +3.4 78,087 - MMJJ_RS00430 0.15 -0.3 78,357 - MMJJ_RS00430 0.44 -1.9 78,485 + MMJJ_RS00430 0.58 -1.8 78,742 + MMJJ_RS00430 0.86 -1.5 78,775 + MMJJ_RS00430 0.90 -0.4 78,876 + +0.1 78,876 + +0.7 78,876 + +0.7 78,895 - -0.3 78,904 - -1.0 78,905 + -0.4 78,935 - -2.4 78,940 - +0.7 78,941 + +0.3 78,948 + MMJJ_RS00435 0.11 -1.7 79,014 + MMJJ_RS00435 0.22 -0.9 79,023 - MMJJ_RS00435 0.24 -1.7 79,028 - MMJJ_RS00435 0.25 -0.1 79,029 + MMJJ_RS00435 0.25 -0.4 79,064 - MMJJ_RS00435 0.31 -0.5 79,064 - MMJJ_RS00435 0.31 -0.0 79,069 - MMJJ_RS00435 0.32 -1.1 79,070 + MMJJ_RS00435 0.32 +0.2 79,271 - MMJJ_RS00435 0.66 +0.0 79,271 - MMJJ_RS00435 0.66 +0.2 79,271 - MMJJ_RS00435 0.66 +0.1 79,271 - MMJJ_RS00435 0.66 +1.0 79,271 - MMJJ_RS00435 0.66 +0.4 79,271 - MMJJ_RS00435 0.66 -3.6 79,272 + MMJJ_RS00435 0.67 +0.3 79,272 + MMJJ_RS00435 0.67 +0.9 79,272 + MMJJ_RS00435 0.67 -0.6 79,272 + MMJJ_RS00435 0.67 -0.6 79,272 + MMJJ_RS00435 0.67 -0.5 79,272 + MMJJ_RS00435 0.67 -1.0 79,283 - MMJJ_RS00435 0.69 +0.1 79,284 + MMJJ_RS00435 0.69 -0.8 79,332 - MMJJ_RS00435 0.77 +0.2 79,350 - MMJJ_RS00435 0.80 +0.2 79,351 + MMJJ_RS00435 0.80 +0.6 79,376 - MMJJ_RS00435 0.85 +0.4 79,377 + MMJJ_RS00435 0.85 +0.8 79,392 - MMJJ_RS00435 0.87 -0.8 79,392 - MMJJ_RS00435 0.87 +0.5 79,392 - MMJJ_RS00435 0.87 -1.0 79,398 - MMJJ_RS00435 0.88 +0.2 79,398 - MMJJ_RS00435 0.88 -1.2 79,419 + -1.4 79,428 + +0.0 79,428 + -0.1 79,428 + +0.3 79,428 + +1.5 79,431 + -1.3 79,431 + -0.8 79,431 + -1.0 79,462 - +0.9 79,463 + +0.0 79,479 - -0.4 79,480 + -1.3 79,480 + +0.0 79,480 + -3.3 79,481 - +0.6 79,482 + +0.9 79,482 + -0.2 79,482 + -0.6 79,482 + +0.5 79,499 + +0.2 79,531 - +1.3 79,532 + -0.5 79,551 + -1.1 79,555 - +0.4 79,601 + +0.8 79,604 + -1.7 79,604 + +1.2 79,635 - -4.0 79,726 - MMJJ_RS00440 0.18 -3.0 79,727 + MMJJ_RS00440 0.18 +0.9 79,764 + MMJJ_RS00440 0.22 +0.2 79,780 - MMJJ_RS00440 0.23 +1.1 79,780 - MMJJ_RS00440 0.23 +0.8 79,780 - MMJJ_RS00440 0.23 +0.2 79,780 - MMJJ_RS00440 0.23 -0.3 79,780 - MMJJ_RS00440 0.23 -1.7 79,780 - MMJJ_RS00440 0.23 -0.3 79,780 - MMJJ_RS00440 0.23 +0.1 79,781 + MMJJ_RS00440 0.23 -0.6 79,781 + MMJJ_RS00440 0.23 -3.7 79,781 + MMJJ_RS00440 0.23 -0.3 79,781 + MMJJ_RS00440 0.23 +0.8 79,783 + MMJJ_RS00440 0.24 +0.5 79,819 - MMJJ_RS00440 0.27 +0.2
Or see this region's nucleotide sequence